Rh1DG177100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000124
Physical Location & Seq
Reverse (-)
36222580 .. 36237820
15241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG177100.1

Sequence Viewer

Length: 2133 bp
ATGAAGGCCCAGCGAGGTAATCTATTCGGTTCTCCACCAAATATCACGGGAGCCACTGGAGCAAATGACTCACCGAATACCCCTGATGTGGCTACGAGATCAACTAAACTTGTTATGGGGGACTTGGTGACAAATTCCAAACCCTATGAGTTCACACTGACCATTGGATGCAACACTCTTGTTGGACCTGTCTGGAGGCTGATGGTGTACAGTGTTGACCTCGGTAACCGCAGAGTGTCGATAATGGGCCAGAACTTTGCAGTTACTCCACATGAGTTTGGCCTTGTAATGGGAGTGCAGGATGGAGGCTCTGACTTTGAACTGGGGACTGCCACAGACGTTGCTGAGTATGGCATGATTGTGGAAGACATGTGTGACACAGAAGGAAGGATCCAGTACTGTCATCTTAAGGAAATAGTACGGGACCGTGAGGAAGCCGACGACAAGTTCAGGATCGCATTTTCCTTGCTTGCACTAGGTTTGGTTCTGTGCCCTACAACAGATGACGCTGTTGACACGTCTCTGATTCTACCCCTTCTGGAAATGGGACGCATTGGGCAGAAGAACTGGGCTTCCTTTTGTCTCCAAAGATTGCTAGACTCTGTCACGGCCCAGAGGGAACATGGGGATGGTGTTGTTGGGGGGTGTGTGCTCTTCCTCCAGGTTCTATACTTGGAGAAGGTCGGCTTGGCTTGTTTTCATATTGATAGGTCTATACTTCCACTTAAGGCCTGGGGGGACTTTGAGGTCAGGGAGTTGATAACCAGGGTTAGGACATATGGTGGCTTTAAGAGTCCAATTGTCATGATGGAGAGGAACAAGCGGGTGAAAATGGCTGCTAAATGCGCCGATGATGATGGTGAGTTTGGACTCGGACTGAGGAAGTCAGTTCATGAGGACATCTTCGACGTCAAGTTGGAGCTCATGGGGGTCAAGGGTGACGTGTGGAGGCTCATGGATGCTTGTGGGAGGATTCAGCCTGATGTGGCCCAACTAGCAAGGAAAGTGGAGATTATAGCACATCAGATAAGCGGTTTGAGGGAGGAATGTGCCGAGATGGTGAAGATCCAACTGCTGAGATCGGCAAACAGGAGGGGGGATGACTGCAACGTTCACACAGTCCCTGTGTGGAAACCGCGGATGAGGGATGGAATGGGGAGTGGAGATTCAGTCCTCCATGCTGACACATTTCAGGAGGAAGAGAGCTTGCAGCGAATGAAGGCAAATTCAAAGCTATGTGATAATGCTTTTGGTAAGGCAGTCAAGGCTGTATCTGCCAGCTCAAGCAGTCCTGGTGCCGCCCCAACAAGAGAGATGAGAACATATCAGGGCGGGTGTGTGCCTGAATCCAAGGCAGTTGTATCTCCACATGCCAGGGCCATGTTCACTTATGCAGTCACCCGCAACGAGGAGGTCAATCATGTGATTAGAATGGGCTGTAATGGAGCAGAGCTCACTAATGCCAAATCTTTGATGCTGCCAGGACCTTACATGCTGATGCACCCTATAGGGAATGACGACATTCTCCTAATCAATTACATTTTCATGGGTGGGAAGAAAGTTTCGGTGGAGGAGGGAAGAACTATGGTTGCTTCAACAGGGAATGAGAAGGCACTACTTTACCGTGATGAGGCCTTATGCTTGGGGCCAGCCACAAATGTTTCCAGCTTTATGTTTTTGCCGATGCACGAGGACAAGGCCGGGGGACATTGGTATCTGATGGTGGTTGATCTAGAAAAGAAGGTGGCTGAGGTTTGGGACAGCCTGCCGACTCTGTCATCAGCAAGCAGTAGATGGGACCATGCACTGACAACGGCCGGGTCAGATGATCTTAGAGCAAGGGTGCTTCTTCGGTGTCTCAAAGCCCCTGATAATGAGAGGGCCACAGTTACACTAAGAGAAGCACACTCCTTTGCTGTTGAGAAGGGATCTGTGGGAGGTTTGAAGGAGGACAAGATAGTGGAGCCAAATGGATGGGAATGGATTGATCTGTCTGAGTTTGATGAACTGGATGATGATTTGGGAGTTACTCAAGTTGGTGATCCGAGTACAGCGGCAATTGGTGAGTCAGGCATAGTGAAGAGGAACATGGACCTTAGGGGAGGCTTTCCTAAGGGAATGTTCCGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

710

Amino Acids

78.04

Weight (kDa)

5.49

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 557 - 603 3.2e-06 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 746
AatII GACGTC 1 cut(s) 912
AccB1I GGYRCC 1 cut(s) 1295
AccII CGCG 1 cut(s) 1138
AciI CCGC 9 cut(s) 229, 823, 1032, 1136, 1138, 1299, 1332, 1402, 2054
AclI AACGTT 1 cut(s) 1110
AclWI GGATC 6 cut(s) 385, 398, 461, 1060, 1936, 2036
AcoI YGGCCR 1 cut(s) 1815
AcsI RAATTY 2 cut(s) 133, 1225
AcyI GRCGYC 1 cut(s) 909
AfaI GTAC 4 cut(s) 209, 398, 420, 2050
AfiI CCNNNNNNNGG 5 cut(s) 88, 289, 771, 1408, 1630
AflII CTTAAG 2 cut(s) 407, 725
AflIII ACRYGT 3 cut(s) 369, 516, 942
AgsI TTSAA 4 cut(s) 320, 1230, 1596, 1945
AjiI CACGTC 2 cut(s) 519, 943
AjnI CCWGG 6 cut(s) 660, 731, 764, 1291, 1373, 1480
AjuI GAANNNNNNNTTGG 2 cut(s) 671, 703
AloI GAACNNNNNNTCC 2 cut(s) 557, 589
AluBI AGCT 6 cut(s) 922, 1206, 1234, 1281, 1453, 1668
AluI AGCT 6 cut(s) 922, 1206, 1234, 1281, 1453, 1668
Alw21I GWGCWC 3 cut(s) 654, 924, 1455
Alw26I GTCTC 3 cut(s) 525, 587, 1862
AlwI GGATC 6 cut(s) 385, 398, 461, 1060, 1936, 2036
AlwNI CAGNNNCTG 1 cut(s) 1124
ApeKI GCWGC 3 cut(s) 836, 1210, 1477
ApoI RAATTY 2 cut(s) 133, 1225
AspLEI GCGC 1 cut(s) 848
AsuC2I CCSGG 2 cut(s) 1702, 1819
AsuHPI GGTGA 9 cut(s) 63, 139, 838, 872, 950, 1072, 1390, 2051, 2075
AvaII GGWCC 5 cut(s) 185, 424, 1484, 1798, 2092
AxyI CCTNAGG 2 cut(s) 2096, 2112
BaeGI GKGCMC 1 cut(s) 494
BaeI ACNNNNGTAYC 2 cut(s) 1697, 1730
BamHI GGATCC 1 cut(s) 390
BanI GGYRCC 1 cut(s) 1295
BanII GRGCYC 2 cut(s) 924, 1455
BauI CACGAG 1 cut(s) 1688
BbsI GAAGAC 1 cut(s) 372
Bbv12I GWGCWC 3 cut(s) 654, 924, 1455
BbvCI CCTCAGC 1 cut(s) 1749
BbvI GCAGC 3 cut(s) 823, 1222, 1464
BceAI ACGGC 2 cut(s) 624, 1830
BciT130I CCWGG 6 cut(s) 662, 733, 766, 1293, 1375, 1482
BcnI CCSGG 2 cut(s) 1702, 1819
BcoDI GTCTC 3 cut(s) 525, 587, 1862
BfaI CTAG 4 cut(s) 476, 596, 995, 1733
BfmI CTRYAG 1 cut(s) 1506
BfrI CTTAAG 2 cut(s) 407, 725
BisI GCNGC 5 cut(s) 837, 1211, 1299, 1478, 2055
BlsI GCNGC 5 cut(s) 838, 1212, 1300, 1479, 2056
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 8 cut(s) 662, 733, 766, 1293, 1375, 1482, 1702, 1819
Bme18I GGWCC 5 cut(s) 185, 424, 1484, 1798, 2092
BmgBI CACGTC 2 cut(s) 519, 943
BmiI GGNNCC 7 cut(s) 52, 392, 425, 1297, 1647, 1799, 1965
BmrFI CCNGG 8 cut(s) 662, 733, 766, 1293, 1375, 1482, 1702, 1819
BmrI ACTGGG 2 cut(s) 332, 577
BmsI GCATC 5 cut(s) 158, 949, 1464, 1488, 1674
BmuI ACTGGG 2 cut(s) 332, 577
BpiI GAAGAC 1 cut(s) 372
BplI GAGNNNNNCTC 2 cut(s) 1437, 1469
BpmI CTGGAG 3 cut(s) 78, 214, 644
Bpu10I CCTNAGC 1 cut(s) 1749
BpuEI CTTGAG 2 cut(s) 1267, 2016
BpuMI CCSGG 2 cut(s) 1702, 1819
BsaHI GRCGYC 1 cut(s) 909
BsaJI CCNNGG 7 cut(s) 220, 732, 765, 1136, 1350, 1374, 1701
BsaXI ACNNNNNCTCC 2 cut(s) 1155, 1185
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 289, 771, 1408, 1630
Bse1I ACTGG 5 cut(s) 61, 327, 394, 572, 2013
Bse21I CCTNAGG 2 cut(s) 2096, 2112
BseBI CCWGG 6 cut(s) 662, 733, 766, 1293, 1375, 1482
BseDI CCNNGG 7 cut(s) 220, 732, 765, 1136, 1350, 1374, 1701
BseGI GGATG 9 cut(s) 173, 307, 634, 964, 1105, 1146, 1153, 1979, 2017
BseLI CCNNNNNNNGG 5 cut(s) 88, 289, 771, 1408, 1630
BseMII CTCAG 5 cut(s) 336, 869, 1067, 1740, 1986
BseNI ACTGG 5 cut(s) 61, 327, 394, 572, 2013
BseRI GAGGAG 2 cut(s) 1424, 1586
BseSI GKGCMC 1 cut(s) 494
BseX3I CGGCCG 1 cut(s) 1815
BseXI GCAGC 3 cut(s) 823, 1222, 1464
BseYI CCCAGC 1 cut(s) 9
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 1138
Bsh1285I CGRYCG 1 cut(s) 1818
BshNI GGYRCC 1 cut(s) 1295
BsiEI CGRYCG 1 cut(s) 1818
BsiHKAI GWGCWC 3 cut(s) 654, 924, 1455
BsiSI CCGG 2 cut(s) 1701, 1818
BslFI GGGAC 9 cut(s) 134, 340, 437, 561, 752, 1106, 1719, 1772, 1811
BslI CCNNNNNNNGG 5 cut(s) 88, 289, 771, 1408, 1630
BsmAI GTCTC 3 cut(s) 525, 587, 1862
BsmBI CGTCTC 1 cut(s) 525
BsmFI GGGAC 9 cut(s) 134, 340, 437, 561, 752, 1106, 1719, 1772, 1811
Bsp1286I GDGCHC 4 cut(s) 494, 654, 924, 1455
Bsp1407I TGTACA 1 cut(s) 207
BspACI CCGC 9 cut(s) 229, 823, 1032, 1136, 1138, 1299, 1332, 1402, 2054
BspCNI CTCAG 5 cut(s) 337, 870, 1068, 1741, 1987
BspFNI CGCG 1 cut(s) 1138
BspHI TCATGA 2 cut(s) 804, 892
BspLI GGNNCC 7 cut(s) 52, 392, 425, 1297, 1647, 1799, 1965
BspPI GGATC 6 cut(s) 385, 398, 461, 1060, 1936, 2036
BspQI GCTCTTC 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 1295
BspTI CTTAAG 2 cut(s) 407, 725
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 5 cut(s) 61, 327, 394, 572, 2013
BssECI CCNNGG 7 cut(s) 220, 732, 765, 1136, 1350, 1374, 1701
BssNI GRCGYC 1 cut(s) 909
BssSI CACGAG 1 cut(s) 1688
BssT1I CCWWGG 1 cut(s) 1350
Bst2BI CACGAG 1 cut(s) 1688
Bst2UI CCWGG 6 cut(s) 662, 733, 766, 1293, 1375, 1482
Bst4CI ACNGT 6 cut(s) 212, 401, 428, 1120, 1625, 1888
Bst6I CTCTTC 3 cut(s) 659, 1194, 2075
BstACI GRCGYC 1 cut(s) 909
BstAFI CTTAAG 2 cut(s) 407, 725
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 6 cut(s) 471, 1208, 1279, 1650, 1766, 1786
BstDEI CTNAG 9 cut(s) 345, 878, 1076, 1749, 1832, 1895, 1995, 2096, 2112
BstDSI CCRYGG 1 cut(s) 1136
BstEII GGTNACC 1 cut(s) 224
BstF5I GGATG 9 cut(s) 173, 307, 634, 964, 1105, 1146, 1153, 1979, 2017
BstFNI CGCG 1 cut(s) 1138
BstHHI GCGC 1 cut(s) 848
BstMAI GTCTC 3 cut(s) 525, 587, 1862
BstMCI CGRYCG 1 cut(s) 1818
BstMWI GCNNNNNNNGC 5 cut(s) 59, 845, 995, 1265, 1274
BstNI CCWGG 6 cut(s) 662, 733, 766, 1293, 1375, 1482
BstNSI RCATGY 3 cut(s) 373, 1373, 1495
BstPI GGTNACC 1 cut(s) 224
BstSCI CCNGG 8 cut(s) 660, 731, 764, 1291, 1373, 1480, 1700, 1817
BstSFI CTRYAG 1 cut(s) 1506
BstSLI GKGCMC 1 cut(s) 494
BstUI CGCG 1 cut(s) 1138
BstV1I GCAGC 3 cut(s) 823, 1222, 1464
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 3 cut(s) 390, 1065, 1928
BstXI CCANNNNNNTGG 1 cut(s) 1974
BstYI RGATCY 3 cut(s) 390, 1065, 1928
BstZI CGGCCG 1 cut(s) 1815
Bsu36I CCTNAGG 2 cut(s) 2096, 2112
BtgI CCRYGG 1 cut(s) 1136
BtrI CACGTC 2 cut(s) 519, 943
BtsCI GGATG 9 cut(s) 173, 307, 634, 964, 1105, 1146, 1153, 1979, 2017
BtsIMutI CAGTG 4 cut(s) 54, 155, 217, 1805
Cac8I GCNNGC 6 cut(s) 471, 1208, 1279, 1650, 1766, 1786
CaiI CAGNNNCTG 1 cut(s) 1124
CciI TCATGA 2 cut(s) 804, 892
CfoI GCGC 1 cut(s) 848
Cfr42I CCGCGG 1 cut(s) 1139
CseI GACGC 2 cut(s) 515, 558
Csp6I GTAC 4 cut(s) 208, 397, 419, 2049
CspCI CAANNNNNGTGG 4 cut(s) 322, 357, 987, 1022
CviQI GTAC 4 cut(s) 208, 397, 419, 2049
DdeI CTNAG 9 cut(s) 345, 878, 1076, 1749, 1832, 1895, 1995, 2096, 2112
DrdI GACNNNNNNGTC 1 cut(s) 746
DseDI GACNNNNNNGTC 1 cut(s) 746
EaeI YGGCCR 1 cut(s) 1815
EagI CGGCCG 1 cut(s) 1815
Eam1104I CTCTTC 3 cut(s) 659, 1194, 2075
EarI CTCTTC 3 cut(s) 659, 1194, 2075
Ecl136II GAGCTC 2 cut(s) 922, 1453
EclXI CGGCCG 1 cut(s) 1815
Eco130I CCWWGG 1 cut(s) 1350
Eco147I AGGCCT 2 cut(s) 731, 1634
Eco24I GRGCYC 2 cut(s) 924, 1455
Eco47I GGWCC 5 cut(s) 185, 424, 1484, 1798, 2092
Eco52I CGGCCG 1 cut(s) 1815
Eco53kI GAGCTC 2 cut(s) 922, 1453
Eco81I CCTNAGG 2 cut(s) 2096, 2112
Eco91I GGTNACC 1 cut(s) 224
EcoICRI GAGCTC 2 cut(s) 922, 1453
EcoO109I RGGNCCY 1 cut(s) 1484
EcoO65I GGTNACC 1 cut(s) 224
EcoRII CCWGG 6 cut(s) 660, 731, 764, 1291, 1373, 1480
EcoT14I CCWWGG 1 cut(s) 1350
EcoT38I GRGCYC 2 cut(s) 924, 1455
ErhI CCWWGG 1 cut(s) 1350
Esp3I CGTCTC 1 cut(s) 525
FalI AAGNNNNNCTT 2 cut(s) 671, 703
FaqI GGGAC 9 cut(s) 134, 340, 437, 561, 752, 1106, 1719, 1772, 1811
FauI CCCGC 3 cut(s) 816, 1325, 1409
FauNDI CATATG 1 cut(s) 778
Fnu4HI GCNGC 5 cut(s) 837, 1211, 1299, 1478, 2055
FokI GGATG 9 cut(s) 180, 314, 641, 971, 1112, 1153, 1160, 1986, 2024
FriOI GRGCYC 2 cut(s) 924, 1455
Fsp4HI GCNGC 5 cut(s) 837, 1211, 1299, 1478, 2055
FspBI CTAG 4 cut(s) 476, 596, 995, 1733
GlaI GCGC 1 cut(s) 847
GluI GCNGC 5 cut(s) 837, 1211, 1299, 1478, 2055
GsaI CCCAGC 1 cut(s) 13
GsuI CTGGAG 3 cut(s) 78, 214, 644
HapII CCGG 2 cut(s) 1701, 1818
HgaI GACGC 2 cut(s) 515, 558
HhaI GCGC 1 cut(s) 848
Hin1I GRCGYC 1 cut(s) 909
Hin6I GCGC 1 cut(s) 846
HinP1I GCGC 1 cut(s) 846
HincII GTYRAC 2 cut(s) 217, 514
HindII GTYRAC 2 cut(s) 217, 514
HpaII CCGG 2 cut(s) 1701, 1818
HphI GGTGA 9 cut(s) 63, 139, 838, 872, 950, 1072, 1390, 2051, 2075
Hpy166II GTNNAC 6 cut(s) 153, 208, 217, 514, 1114, 1386
Hpy188I TCNGA 8 cut(s) 313, 525, 875, 1026, 1719, 1825, 1996, 2046
Hpy188III TCNNGA 7 cut(s) 193, 451, 539, 805, 893, 1193, 1733
Hpy8I GTNNAC 6 cut(s) 153, 208, 217, 514, 1114, 1386
Hpy99I CGWCG 2 cut(s) 443, 911
HpyAV CCTTC 9 cut(s) 377, 381, 545, 673, 1213, 1603, 1735, 1918, 1939
HpyCH4III ACNGT 6 cut(s) 212, 401, 428, 1120, 1625, 1888
HpyCH4IV ACGT 5 cut(s) 339, 518, 909, 942, 1110
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 845, 995, 1265, 1274
HpyF3I CTNAG 9 cut(s) 345, 878, 1076, 1749, 1832, 1895, 1995, 2096, 2112
HpySE526I ACGT 5 cut(s) 339, 518, 909, 942, 1110
Hsp92I GRCGYC 1 cut(s) 909
HspAI GCGC 1 cut(s) 846
KspI CCGCGG 1 cut(s) 1139
LguI GCTCTTC 1 cut(s) 659
LmnI GCTCC 5 cut(s) 50, 59, 919, 1445, 1963
Lsp1109I GCAGC 3 cut(s) 823, 1222, 1464
LweI GCATC 5 cut(s) 158, 949, 1464, 1488, 1674
MaeI CTAG 4 cut(s) 476, 596, 995, 1733
MaeII ACGT 5 cut(s) 339, 518, 909, 942, 1110
MaeIII GTNAC 9 cut(s) 127, 224, 262, 374, 604, 938, 1396, 1888, 2026
MfeI CAATTG 2 cut(s) 798, 2058
MflI RGATCY 3 cut(s) 390, 1065, 1928
MhlI GDGCHC 4 cut(s) 494, 654, 924, 1455
MluCI AATT 5 cut(s) 133, 798, 1225, 1534, 2058
MlyI GAGTC 6 cut(s) 62, 593, 802, 864, 1765, 2075
MmeI TCCRAC 3 cut(s) 163, 897, 1093
MseI TTAA 3 cut(s) 408, 726, 789
MslI CAYNNNNRTG 4 cut(s) 359, 627, 1496, 1544
MspA1I CMGCKG 2 cut(s) 1138, 2054
MspCI CTTAAG 2 cut(s) 407, 725
MspI CCGG 2 cut(s) 1701, 1818
MspR9I CCNGG 8 cut(s) 662, 733, 766, 1293, 1375, 1482, 1702, 1819
MunI CAATTG 2 cut(s) 798, 2058
MvaI CCWGG 6 cut(s) 662, 733, 766, 1293, 1375, 1482
MvnI CGCG 1 cut(s) 1138
MwoI GCNNNNNNNGC 5 cut(s) 59, 845, 995, 1265, 1274
NciI CCSGG 2 cut(s) 1702, 1819
NdeI CATATG 1 cut(s) 778
NlaIV GGNNCC 7 cut(s) 52, 392, 425, 1297, 1647, 1799, 1965
NmeAIII GCCGAG 1 cut(s) 1078
NmuCI GTSAC 5 cut(s) 127, 374, 604, 938, 1396
NspI RCATGY 3 cut(s) 373, 1373, 1495
PagI TCATGA 2 cut(s) 804, 892
PceI AGGCCT 2 cut(s) 731, 1634
PciI ACATGT 1 cut(s) 369
PciSI GCTCTTC 1 cut(s) 659
PfeI GAWTC 4 cut(s) 526, 973, 1166, 1346
PflFI GACNNNGTC 2 cut(s) 602, 1774
PkrI GCNGC 5 cut(s) 838, 1212, 1300, 1479, 2056
PleI GAGTC 6 cut(s) 62, 593, 801, 864, 1765, 2074
PpsI GAGTC 6 cut(s) 62, 593, 801, 864, 1765, 2074
PpuMI RGGWCCY 1 cut(s) 1484
PscI ACATGT 1 cut(s) 369
Psp124BI GAGCTC 2 cut(s) 924, 1455
Psp1406I AACGTT 1 cut(s) 1110
Psp5II RGGWCCY 1 cut(s) 1484
Psp6I CCWGG 6 cut(s) 660, 731, 764, 1291, 1373, 1480
PspEI GGTNACC 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 9
PspGI CCWGG 6 cut(s) 660, 731, 764, 1291, 1373, 1480
PspN4I GGNNCC 7 cut(s) 52, 392, 425, 1297, 1647, 1799, 1965
PspPPI RGGWCCY 1 cut(s) 1484
PstNI CAGNNNCTG 1 cut(s) 1124
PsuI RGATCY 3 cut(s) 390, 1065, 1928
PsyI GACNNNGTC 2 cut(s) 602, 1774
RsaI GTAC 4 cut(s) 209, 398, 420, 2050
RsaNI GTAC 4 cut(s) 208, 397, 419, 2049
RseI CAYNNNNRTG 4 cut(s) 359, 627, 1496, 1544
SacI GAGCTC 2 cut(s) 924, 1455
SacII CCGCGG 1 cut(s) 1139
SapI GCTCTTC 1 cut(s) 659
SaqAI TTAA 3 cut(s) 408, 726, 789
SatI GCNGC 5 cut(s) 837, 1211, 1299, 1478, 2055
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 6 cut(s) 62, 593, 802, 864, 1765, 2075
ScrFI CCNGG 8 cut(s) 662, 733, 766, 1293, 1375, 1482, 1702, 1819
SduI GDGCHC 4 cut(s) 494, 654, 924, 1455
SfaNI GCATC 5 cut(s) 158, 949, 1464, 1488, 1674
SfcI CTRYAG 1 cut(s) 1506
Sfr303I CCGCGG 1 cut(s) 1139
SgrBI CCGCGG 1 cut(s) 1139
SinI GGWCC 5 cut(s) 185, 424, 1484, 1798, 2092
SmiMI CAYNNNNRTG 4 cut(s) 359, 627, 1496, 1544
SmlI CTYRAG 4 cut(s) 407, 725, 1282, 2031
SmoI CTYRAG 4 cut(s) 407, 725, 1282, 2031
Sse9I AATT 5 cut(s) 133, 798, 1225, 1534, 2058
SseBI AGGCCT 2 cut(s) 731, 1634
SsiI CCGC 9 cut(s) 229, 823, 1032, 1136, 1138, 1299, 1332, 1402, 2054
SspMI CTAG 4 cut(s) 476, 596, 995, 1733
SstI GAGCTC 2 cut(s) 924, 1455
StuI AGGCCT 2 cut(s) 731, 1634
StyD4I CCNGG 8 cut(s) 660, 731, 764, 1291, 1373, 1480, 1700, 1817
StyI CCWWGG 1 cut(s) 1350
TaaI ACNGT 6 cut(s) 212, 401, 428, 1120, 1625, 1888
TaiI ACGT 5 cut(s) 342, 521, 912, 945, 1113
TaqI TCGA 2 cut(s) 239, 906
TasI AATT 5 cut(s) 133, 798, 1225, 1534, 2058
TatI WGTACW 3 cut(s) 207, 396, 2048
TauI GCSGC 2 cut(s) 1301, 2057
TfiI GAWTC 4 cut(s) 526, 973, 1166, 1346
Tru1I TTAA 3 cut(s) 408, 726, 789
Tru9I TTAA 3 cut(s) 408, 726, 789
TscAI CASTG 4 cut(s) 61, 162, 217, 1812
TseFI GTSAC 5 cut(s) 127, 374, 604, 938, 1396
TseI GCWGC 3 cut(s) 836, 1210, 1477
Tsp45I GTSAC 5 cut(s) 127, 374, 604, 938, 1396
TspDTI ATGAA 6 cut(s) 17, 689, 881, 1232, 1534, 2019
TspGWI ACGGA 1 cut(s) 2114
TspRI CASTG 4 cut(s) 61, 162, 217, 1812
Tth111I GACNNNGTC 2 cut(s) 602, 1774
Vha464I CTTAAG 2 cut(s) 407, 725
VpaK11BI GGWCC 5 cut(s) 185, 424, 1484, 1798, 2092
XapI RAATTY 2 cut(s) 133, 1225
XbaI TCTAGA 1 cut(s) 1732
XceI RCATGY 3 cut(s) 373, 1373, 1495
XcmI CCANNNNNNNNNTGG 2 cut(s) 620, 729
XspI CTAG 4 cut(s) 476, 596, 995, 1733
ZraI GACGTC 1 cut(s) 910
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.