Rw1G000270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000124
Physical Location & Seq
Reverse (-)
366583 .. 368289
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G000270.1

Sequence Viewer

Length: 897 bp
ATGGATGTCTCAAAAAGTTCAAGTGGAGAAGGTTGTGCGCGGTGGGTGTCGGCTAGGCGTAAGCTTGACGTGGGGAGAGGGAGGATTGAGACTGGGTTACAACCCCATGCCAACCTTTCCACTGCTGCGGGGAAGGATGAACAGAAAATGACATTATCTAAGATTGGCGAGTTCAAGGACACCGTCAACAACCTATCAGATGCAAAAGTTAAGGCCGTTGTGGGGGTGGGATATGGATTTATGCAATGCATTAGGTCAGATGACGTCGTCCCCGAAATTTTGGGAGACATGGTCAAAAATATCAACACGGAAGCATGCAATATCAGGTTGAAGAGTAGGCTTCTATCTTTAGACGCGGACGAATTTACGCGTGTTATGGGCATTCACAATGAGGGGCATGCCATTGAACTCGGGGGTGACATTAGTCCTGCTGAATATGGAAATGGTGTAGCTCCGATGCTTGGCCCGACTGGCAATATTGCAGTGGACAATCTGAAGTTCATTGTGCGTGACAGGGAAATTGTTGACGACTGTTTCATTATAGCTTATGCATTGTTGGCTCTGACCCTAGTAATATGTCCAGGAACAAATACCCGCAGTATAGGAGCGAAGAATTGGGCAACATTTGCAGTGGACTACTTGATGGAGGGAATAAGAAAGCATCGTGAAGAAGGATCCCCGGTTGTAGCGGGATGTGCACTATATCTGCAGCTGGTATATTGTGACAAAGTTGGTGAGAAGTTACTGCCAAAGGAGCTGCTAGTGGCACCTGTGATGGACTGGAGCCTTGGGGAGATAAATGTGTTACTGGGTAGGTTAGTAGCAGAAACTAAAACCAAGATAATGGGTGAGATGGGGACAATTGTAATAAGGGGACTAGTGTGGATGAGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

298

Amino Acids

32.44

Weight (kDa)

6.15

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 766
AccII CGCG 3 cut(s) 40, 356, 370
AciI CCGC 5 cut(s) 40, 128, 356, 595, 689
AclWI GGATC 2 cut(s) 669, 682
AcsI RAATTY 2 cut(s) 276, 362
AcuI CTGAAG 1 cut(s) 515
AcyI GRCGYC 1 cut(s) 264
AfiI CCNNNNNNNGG 2 cut(s) 222, 461
AflIII ACRYGT 1 cut(s) 368
AgsI TTSAA 4 cut(s) 21, 175, 331, 407
AhlI ACTAGT 1 cut(s) 877
AjiI CACGTC 1 cut(s) 70
AjnI CCWGG 1 cut(s) 580
AluBI AGCT 5 cut(s) 64, 452, 545, 712, 757
AluI AGCT 5 cut(s) 64, 452, 545, 712, 757
Alw21I GWGCWC 1 cut(s) 700
Alw26I GTCTC 3 cut(s) 13, 83, 279
Alw44I GTGCAC 1 cut(s) 696
AlwI GGATC 2 cut(s) 669, 682
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 2 cut(s) 213, 463
ApaLI GTGCAC 1 cut(s) 696
ApeKI GCWGC 3 cut(s) 125, 709, 757
ApoI RAATTY 2 cut(s) 276, 362
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 464
AsuC2I CCSGG 1 cut(s) 680
AsuHPI GGTGA 3 cut(s) 428, 746, 860
AvaI CYCGRG 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 700
BamHI GGATCC 1 cut(s) 674
BanI GGYRCC 1 cut(s) 766
Bbv12I GWGCWC 1 cut(s) 700
BbvI GCAGC 3 cut(s) 112, 721, 744
BccI CCATC 3 cut(s) 637, 769, 847
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 582
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 3 cut(s) 13, 83, 279
BcuI ACTAGT 1 cut(s) 877
BfaI CTAG 4 cut(s) 54, 569, 761, 878
BfmI CTRYAG 1 cut(s) 707
BglI GCCNNNNNGGC 1 cut(s) 471
BisI GCNGC 3 cut(s) 126, 710, 758
BlsI GCNGC 3 cut(s) 127, 711, 759
Bme1390I CCNGG 2 cut(s) 582, 680
BmeT110I CYCGRG 1 cut(s) 410
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 3 cut(s) 676, 768, 785
BmrFI CCNGG 2 cut(s) 582, 680
BmrI ACTGGG 2 cut(s) 102, 818
BmsI GCATC 3 cut(s) 190, 447, 670
BmuI ACTGGG 2 cut(s) 102, 818
BoxI GACNNNNGTC 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 802
BpuMI CCSGG 1 cut(s) 680
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 678, 787
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 461
Bse1I ACTGG 4 cut(s) 97, 475, 785, 813
Bse3DI GCAATG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 2 cut(s) 678, 787
BseGI GGATG 4 cut(s) 10, 142, 698, 891
BseLI CCNNNNNNNGG 2 cut(s) 222, 461
BseMI GCAATG 1 cut(s) 251
BseNI ACTGG 4 cut(s) 97, 475, 785, 813
BseSI GKGCMC 1 cut(s) 700
BseXI GCAGC 3 cut(s) 112, 721, 744
Bsh1236I CGCG 3 cut(s) 40, 356, 370
BshFI GGCC 2 cut(s) 215, 465
BshNI GGYRCC 1 cut(s) 766
BsiHKAI GWGCWC 1 cut(s) 700
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 1 cut(s) 680
BslFI GGGAC 3 cut(s) 254, 871, 888
BslI CCNNNNNNNGG 2 cut(s) 222, 461
BsmAI GTCTC 3 cut(s) 13, 83, 279
BsmFI GGGAC 3 cut(s) 254, 871, 888
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 2 cut(s) 215, 465
BsoBI CYCGRG 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 700
Bsp143I GATC 1 cut(s) 674
BspACI CCGC 5 cut(s) 40, 128, 356, 595, 689
BspANI GGCC 2 cut(s) 215, 465
BspFNI CGCG 3 cut(s) 40, 356, 370
BspLI GGNNCC 3 cut(s) 676, 768, 785
BspMAI CTGCAG 1 cut(s) 711
BspPI GGATC 2 cut(s) 669, 682
BspT107I GGYRCC 1 cut(s) 766
BsrDI GCAATG 1 cut(s) 251
BsrI ACTGG 4 cut(s) 97, 475, 785, 813
BssECI CCNNGG 2 cut(s) 678, 787
BssMI GATC 1 cut(s) 674
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 787
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 2 cut(s) 184, 533
Bst6I CTCTTC 1 cut(s) 326
BstACI GRCGYC 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 626
BstC8I GCNNGC 2 cut(s) 316, 399
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 4 cut(s) 10, 142, 698, 891
BstFNI CGCG 3 cut(s) 40, 356, 370
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 677
BstMAI GTCTC 3 cut(s) 13, 83, 279
BstMBI GATC 1 cut(s) 674
BstMWI GCNNNNNNNGC 5 cut(s) 471, 557, 626, 695, 754
BstNI CCWGG 1 cut(s) 582
BstNSI RCATGY 2 cut(s) 318, 401
BstPAI GACNNNNGTC 1 cut(s) 423
BstSCI CCNGG 2 cut(s) 580, 678
BstSFI CTRYAG 1 cut(s) 707
BstSLI GKGCMC 1 cut(s) 700
BstUI CGCG 3 cut(s) 40, 356, 370
BstV1I GCAGC 3 cut(s) 112, 721, 744
BstX2I RGATCY 1 cut(s) 674
BstXI CCANNNNNNTGG 1 cut(s) 844
BstYI RGATCY 1 cut(s) 674
BsuRI GGCC 2 cut(s) 215, 465
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 4 cut(s) 10, 142, 698, 891
BtsI GCAGTG 3 cut(s) 120, 489, 636
BtsIMutI CAGTG 3 cut(s) 120, 489, 636
Cac8I GCNNGC 2 cut(s) 316, 399
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 464
CseI GACGC 1 cut(s) 362
CviAII CATG 4 cut(s) 107, 289, 315, 398
DdeI CTNAG 1 cut(s) 159
DpnI GATC 1 cut(s) 676
DpnII GATC 1 cut(s) 674
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 787
Eco57I CTGAAG 1 cut(s) 515
Eco88I CYCGRG 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 580
EcoT14I CCWWGG 1 cut(s) 787
EcoT22I ATGCAT 2 cut(s) 251, 553
ErhI CCWWGG 1 cut(s) 787
FaeI CATG 4 cut(s) 110, 292, 318, 401
FaqI GGGAC 3 cut(s) 254, 871, 888
FatI CATG 4 cut(s) 106, 288, 314, 397
FauI CCCGC 3 cut(s) 121, 602, 682
Fnu4HI GCNGC 3 cut(s) 126, 710, 758
FokI GGATG 3 cut(s) 17, 149, 705
Fsp4HI GCNGC 3 cut(s) 126, 710, 758
FspBI CTAG 4 cut(s) 54, 569, 761, 878
GlaI GCGC 1 cut(s) 39
GluI GCNGC 3 cut(s) 126, 710, 758
GsuI CTGGAG 1 cut(s) 802
HaeIII GGCC 2 cut(s) 215, 465
HapII CCGG 1 cut(s) 680
HgaI GACGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 4 cut(s) 110, 292, 318, 401
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HincII GTYRAC 2 cut(s) 187, 526
HindII GTYRAC 2 cut(s) 187, 526
HindIII AAGCTT 1 cut(s) 62
HpaII CCGG 1 cut(s) 680
HphI GGTGA 3 cut(s) 428, 746, 860
Hpy166II GTNNAC 5 cut(s) 187, 487, 526, 634, 698
Hpy188I TCNGA 5 cut(s) 199, 259, 456, 495, 564
Hpy188III TCNNGA 1 cut(s) 665
Hpy8I GTNNAC 5 cut(s) 187, 487, 526, 634, 698
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 23, 127, 665
HpyCH4III ACNGT 2 cut(s) 184, 533
HpyCH4IV ACGT 2 cut(s) 69, 264
HpyCH4V TGCA 9 cut(s) 203, 244, 249, 318, 482, 551, 629, 698, 709
HpyF10VI GCNNNNNNNGC 5 cut(s) 471, 557, 626, 695, 754
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 2 cut(s) 69, 264
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 4 cut(s) 110, 292, 318, 401
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 674
LmnI GCTCC 4 cut(s) 457, 605, 754, 783
Lsp1109I GCAGC 3 cut(s) 112, 721, 744
LweI GCATC 3 cut(s) 190, 447, 670
MaeI CTAG 4 cut(s) 54, 569, 761, 878
MaeII ACGT 2 cut(s) 69, 264
MaeIII GTNAC 6 cut(s) 96, 416, 509, 722, 741, 804
MalI GATC 1 cut(s) 676
MboI GATC 1 cut(s) 674
MboII GAAGA 3 cut(s) 343, 622, 680
MfeI CAATTG 1 cut(s) 861
MflI RGATCY 1 cut(s) 674
MhlI GDGCHC 1 cut(s) 700
MluCI AATT 5 cut(s) 276, 362, 519, 613, 861
MluI ACGCGT 1 cut(s) 368
MnlI CCTC 5 cut(s) 71, 75, 385, 640, 882
Mph1103I ATGCAT 2 cut(s) 251, 553
MseI TTAA 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 712
MspI CCGG 1 cut(s) 680
MspR9I CCNGG 2 cut(s) 582, 680
MunI CAATTG 1 cut(s) 861
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 1 cut(s) 582
MvnI CGCG 3 cut(s) 40, 356, 370
MwoI GCNNNNNNNGC 5 cut(s) 471, 557, 626, 695, 754
NciI CCSGG 1 cut(s) 680
NdeII GATC 1 cut(s) 674
NlaIII CATG 4 cut(s) 110, 292, 318, 401
NlaIV GGNNCC 3 cut(s) 676, 768, 785
NmuCI GTSAC 3 cut(s) 416, 509, 722
NsiI ATGCAT 2 cut(s) 251, 553
NspI RCATGY 2 cut(s) 318, 401
PaeI GCATGC 2 cut(s) 318, 401
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 1 cut(s) 381
PflFI GACNNNGTC 3 cut(s) 182, 266, 290
PfoI TCCNGGA 1 cut(s) 580
PkrI GCNGC 3 cut(s) 127, 711, 759
PshAI GACNNNNGTC 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 3 cut(s) 676, 768, 785
PspPI GGNCC 1 cut(s) 464
PstI CTGCAG 1 cut(s) 711
PsuI RGATCY 1 cut(s) 674
PsyI GACNNNGTC 3 cut(s) 182, 266, 290
PvuII CAGCTG 1 cut(s) 712
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 126, 710, 758
Sau3AI GATC 1 cut(s) 674
Sau96I GGNCC 1 cut(s) 464
ScrFI CCNGG 2 cut(s) 582, 680
SduI GDGCHC 1 cut(s) 700
SfaNI GCATC 3 cut(s) 190, 447, 670
SfcI CTRYAG 1 cut(s) 707
SpeI ACTAGT 1 cut(s) 877
SphI GCATGC 2 cut(s) 318, 401
Sse9I AATT 5 cut(s) 276, 362, 519, 613, 861
SsiI CCGC 5 cut(s) 40, 128, 356, 595, 689
SspI AATATT 1 cut(s) 478
SspMI CTAG 4 cut(s) 54, 569, 761, 878
StyD4I CCNGG 2 cut(s) 580, 678
StyI CCWWGG 1 cut(s) 787
TaaI ACNGT 2 cut(s) 184, 533
TaiI ACGT 2 cut(s) 72, 267
TasI AATT 5 cut(s) 276, 362, 519, 613, 861
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 3 cut(s) 127, 489, 636
TseFI GTSAC 3 cut(s) 416, 509, 722
TseI GCWGC 3 cut(s) 125, 709, 757
Tsp45I GTSAC 3 cut(s) 416, 509, 722
TspDTI ATGAA 3 cut(s) 153, 490, 526
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 3 cut(s) 127, 489, 636
Tth111I GACNNNGTC 3 cut(s) 182, 266, 290
VneI GTGCAC 1 cut(s) 696
XapI RAATTY 2 cut(s) 276, 362
XceI RCATGY 2 cut(s) 318, 401
XspI CTAG 4 cut(s) 54, 569, 761, 878
ZraI GACGTC 1 cut(s) 265
Zsp2I ATGCAT 2 cut(s) 251, 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.