Rw7G030460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000124
Physical Location & Seq
Reverse (-)
43238871 .. 43240730
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030460.1

Sequence Viewer

Length: 1230 bp
ATGGGCACACTCGACGGTGGAGAAAGGATTGTGCTAGGGGAGGGCAAAGAAGCAAAGGAGTATGGAAAAATAGTTTGTCCAATGTGCGATGTGGAAGGTAAAATGACAATTGAGTTGTTAACTAACATAGTAAGTAAAAGAAGAGAGGTGGACGACACTTTCAAGATTGCGTTTGCAATATTGGCACTAACTTGTGTGATATGCCCGGGAGTAGATGATGCAGTTGACGTAGGATTGTTGCTTCCACTTATGGAGACATCAAAAATAGTGCAAAAAAATTGGGCCTCATTTGTAGTCAGTCGCCTAATGAAAGGTGTGAAACGGCACCAGGAGGAAGGAACTCCCGTGGTGGGGGGATGTTTGATATTTCTTCAACTTCTATACCTTGACAAAGTGGGGGACGTTCTTATACCTGATAAGGACAACCTTTGTACACCTGTAATGTATTGGAACACTAATAAGGTGCAGGAAATTGTGAACAAGATAAGGTTGACGGGAGGCCACAAAAGTCCTATTTTCATGTTGGAGAAGAGCAAGAGGACGAAGAGATTACAAGACACAGGTCATGAATGCAGGGTTTCGAGATTCGGACTGAAGCGGGACGTCCACAAGACCATGATGGACTTGCAGTTGGATGTGAGTTCGATGAAGGACCGCATGTGGGATATGAAATGGGAAGTAAGTCGAATGCAACCTAAATTCTTGGACTTTACAAAGGGGGTAGAATTGACACTTCAGGAACTCAAACAAACATTTTCGCAAATAAAAAGTGAATTTTACACAATCTCTAAGCAACAATTAGGGTTGGAAAGGACTAAGGAGGAGAAATTTCGGGTAATTGACAATGTGGTCAAGGGCATGGGAGGGATTGACGAGACAAAAAGGCAGCATTCCACCGTGGGAATGTGCAACGATGACTGCAGTGGAGAAATTCATTTGCCAAATAACAAGGGCAAAGTGGGAATGTCACAGTGCAGCAGTGAGGTAAATATACGATATGGAGATGGGCCGTATAGGTTGAAACTCAAACTGTCTGAGTCTGAAGTAAGAATAATAGACTCAGTGTTTTTGGGCGGGAAACAGCTAACGAAACAAGAAGGAAGATTATGCATAGGAATATGTGGAAAATGGTCACAATCAATTTGCCGTGACGAGATAAATTGTCTGATGCCAAACACAAATGTATCTGGAAGTGTAAGTATGTATAGTCAATATGAAGACGTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

409

Amino Acids

46.19

Weight (kDa)

8.42

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 848
AatII GACGTC 1 cut(s) 606
AccB1I GGYRCC 1 cut(s) 324
AciI CCGC 3 cut(s) 598, 655, 1074
AcsI RAATTY 4 cut(s) 698, 773, 827, 930
AcuI CTGAAG 3 cut(s) 614, 719, 1062
AcyI GRCGYC 1 cut(s) 603
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 3 cut(s) 350, 351, 661
AgsI TTSAA 3 cut(s) 163, 374, 1021
AjiI CACGTC 1 cut(s) 1222
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 1 cut(s) 1084
AluI AGCT 1 cut(s) 1084
Alw26I GTCTC 2 cut(s) 248, 869
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 3 cut(s) 282, 499, 1007
ApeKI GCWGC 2 cut(s) 886, 975
ApoI RAATTY 4 cut(s) 698, 773, 827, 930
AspS9I GGNCC 3 cut(s) 282, 652, 1007
AsuC2I CCSGG 2 cut(s) 206, 207
AvaI CYCGRG 1 cut(s) 205
AvaII GGWCC 1 cut(s) 652
BaeGI GKGCMC 1 cut(s) 8
BaeI ACNNNNGTAYC 2 cut(s) 1167, 1200
BanI GGYRCC 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 1224
BbvI GCAGC 2 cut(s) 898, 987
BccI CCATC 2 cut(s) 613, 998
BceAI ACGGC 3 cut(s) 338, 994, 1131
BciT130I CCWGG 1 cut(s) 329
BcnI CCSGG 2 cut(s) 206, 207
BcoDI GTCTC 2 cut(s) 248, 869
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 919
BisI GCNGC 2 cut(s) 887, 976
BlsI GCNGC 2 cut(s) 888, 977
Bme1390I CCNGG 3 cut(s) 206, 207, 329
Bme18I GGWCC 1 cut(s) 652
BmeT110I CYCGRG 1 cut(s) 205
BmgBI CACGTC 1 cut(s) 1222
BmgT120I GGNCC 3 cut(s) 282, 652, 1007
BmiI GGNNCC 1 cut(s) 326
BmrFI CCNGG 3 cut(s) 206, 207, 329
BmsI GCATC 2 cut(s) 208, 1158
BoxI GACNNNNGTC 1 cut(s) 561
BpiI GAAGAC 1 cut(s) 1224
BpuMI CCSGG 2 cut(s) 206, 207
BsaHI GRCGYC 1 cut(s) 603
BsaJI CCNNGG 3 cut(s) 205, 345, 897
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 351, 661
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 3 cut(s) 205, 345, 897
BseGI GGATG 2 cut(s) 362, 640
BseLI CCNNNNNNNGG 3 cut(s) 350, 351, 661
BseMII CTCAG 2 cut(s) 1026, 1074
BseRI GAGGAG 1 cut(s) 836
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 2 cut(s) 898, 987
BsgI GTGCAG 2 cut(s) 485, 994
BshFI GGCC 3 cut(s) 284, 501, 1009
BshNI GGYRCC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 2 cut(s) 413, 614
BslI CCNNNNNNNGG 3 cut(s) 350, 351, 661
BsmAI GTCTC 2 cut(s) 248, 869
BsmFI GGGAC 2 cut(s) 413, 614
BsmI GAATGC 3 cut(s) 575, 693, 889
BsnI GGCC 3 cut(s) 284, 501, 1009
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 431
BspACI CCGC 3 cut(s) 598, 655, 1074
BspANI GGCC 3 cut(s) 284, 501, 1009
BspCNI CTCAG 2 cut(s) 1027, 1073
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 1 cut(s) 326
BspMAI CTGCAG 1 cut(s) 923
BspQI GCTCTTC 1 cut(s) 524
BspT107I GGYRCC 1 cut(s) 324
BsrGI TGTACA 1 cut(s) 431
BssECI CCNNGG 3 cut(s) 205, 345, 897
BssNI GRCGYC 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 4 cut(s) 17, 898, 972, 1032
Bst6I CTCTTC 3 cut(s) 136, 524, 539
BstACI GRCGYC 1 cut(s) 603
BstAUI TGTACA 1 cut(s) 431
BstDEI CTNAG 4 cut(s) 789, 816, 1035, 1060
BstDSI CCRYGG 2 cut(s) 345, 897
BstF5I GGATG 2 cut(s) 362, 640
BstMAI GTCTC 2 cut(s) 248, 869
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 1 cut(s) 661
BstPAI GACNNNNGTC 1 cut(s) 561
BstSCI CCNGG 3 cut(s) 204, 205, 327
BstSFI CTRYAG 1 cut(s) 919
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 898, 987
BstV2I GAAGAC 1 cut(s) 1224
BsuRI GGCC 3 cut(s) 284, 501, 1009
BtgI CCRYGG 2 cut(s) 345, 897
BtgZI GCGATG 1 cut(s) 102
BtrI CACGTC 1 cut(s) 1222
BtsCI GGATG 2 cut(s) 362, 640
BtsI GCAGTG 2 cut(s) 928, 985
BtsIMutI CAGTG 4 cut(s) 928, 977, 985, 1068
CciI TCATGA 1 cut(s) 565
Cfr13I GGNCC 3 cut(s) 282, 652, 1007
Cfr9I CCCGGG 1 cut(s) 205
Csp6I GTAC 1 cut(s) 432
CviAII CATG 5 cut(s) 520, 566, 616, 658, 859
CviJI RGCY 4 cut(s) 284, 501, 1009, 1084
CviKI_1 RGCY 4 cut(s) 284, 501, 1009, 1084
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 4 cut(s) 789, 816, 1035, 1060
DrdI GACNNNNNNGTC 1 cut(s) 848
DseDI GACNNNNNNGTC 1 cut(s) 848
Eam1104I CTCTTC 3 cut(s) 136, 524, 539
EarI CTCTTC 3 cut(s) 136, 524, 539
Eco47I GGWCC 1 cut(s) 652
Eco57I CTGAAG 3 cut(s) 614, 719, 1062
Eco88I CYCGRG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 327
EcoT22I ATGCAT 1 cut(s) 1112
FaeI CATG 5 cut(s) 523, 569, 619, 661, 862
FaqI GGGAC 2 cut(s) 413, 614
FatI CATG 5 cut(s) 519, 565, 615, 657, 858
FauI CCCGC 2 cut(s) 591, 1067
Fnu4HI GCNGC 2 cut(s) 887, 976
FokI GGATG 2 cut(s) 369, 647
Fsp4HI GCNGC 2 cut(s) 887, 976
FspBI CTAG 1 cut(s) 35
GluI GCNGC 2 cut(s) 887, 976
HaeIII GGCC 3 cut(s) 284, 501, 1009
HapII CCGG 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 5 cut(s) 523, 569, 619, 661, 862
HincII GTYRAC 3 cut(s) 120, 226, 492
HindII GTYRAC 3 cut(s) 120, 226, 492
HinfI GANTC 3 cut(s) 585, 1037, 1058
HpaI GTTAAC 1 cut(s) 120
HpaII CCGG 1 cut(s) 206
Hpy166II GTNNAC 8 cut(s) 120, 151, 226, 434, 478, 492, 607, 1225
Hpy188I TCNGA 4 cut(s) 590, 1036, 1042, 1167
Hpy188III TCNNGA 5 cut(s) 163, 566, 582, 737, 1188
Hpy8I GTNNAC 8 cut(s) 120, 151, 226, 434, 478, 492, 607, 1225
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 89, 329, 643, 1091
HpyCH4III ACNGT 4 cut(s) 17, 898, 972, 1032
HpyCH4IV ACGT 4 cut(s) 228, 402, 603, 1221
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 4 cut(s) 789, 816, 1035, 1060
HpySE526I ACGT 4 cut(s) 228, 402, 603, 1221
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 5 cut(s) 523, 569, 619, 661, 862
KspAI GTTAAC 1 cut(s) 120
LguI GCTCTTC 1 cut(s) 524
Lsp1109I GCAGC 2 cut(s) 898, 987
LweI GCATC 2 cut(s) 208, 1158
MaeI CTAG 1 cut(s) 35
MaeII ACGT 4 cut(s) 228, 402, 603, 1221
MaeIII GTNAC 3 cut(s) 966, 1131, 1148
MboII GAAGA 6 cut(s) 153, 362, 541, 556, 1113, 1229
MfeI CAATTG 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 2 cut(s) 1046, 1052
MmeI TCCRAC 3 cut(s) 504, 612, 786
MnlI CCTC 9 cut(s) 34, 139, 295, 325, 491, 531, 814, 857, 976
Mph1103I ATGCAT 1 cut(s) 1112
MseI TTAA 1 cut(s) 119
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 3 cut(s) 206, 207, 329
MunI CAATTG 1 cut(s) 108
Mva1269I GAATGC 3 cut(s) 575, 693, 889
MvaI CCWGG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 2 cut(s) 206, 207
NlaIII CATG 5 cut(s) 523, 569, 619, 661, 862
NlaIV GGNNCC 1 cut(s) 326
NmuCI GTSAC 3 cut(s) 966, 1131, 1148
NsiI ATGCAT 1 cut(s) 1112
NspI RCATGY 1 cut(s) 661
PagI TCATGA 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 524
PctI GAATGC 3 cut(s) 575, 693, 889
PfeI GAWTC 1 cut(s) 585
PkrI GCNGC 2 cut(s) 888, 977
PleI GAGTC 2 cut(s) 1045, 1052
PpsI GAGTC 2 cut(s) 1045, 1052
PshAI GACNNNNGTC 1 cut(s) 561
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 326
PspPI GGNCC 3 cut(s) 282, 652, 1007
PstI CTGCAG 1 cut(s) 923
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
SapI GCTCTTC 1 cut(s) 524
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 2 cut(s) 887, 976
Sau96I GGNCC 3 cut(s) 282, 652, 1007
SchI GAGTC 2 cut(s) 1046, 1052
ScrFI CCNGG 3 cut(s) 206, 207, 329
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 2 cut(s) 208, 1158
SfcI CTRYAG 1 cut(s) 919
SinI GGWCC 1 cut(s) 652
SmaI CCCGGG 1 cut(s) 207
SsiI CCGC 3 cut(s) 598, 655, 1074
SspI AATATT 1 cut(s) 180
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 3 cut(s) 204, 205, 327
TaaI ACNGT 4 cut(s) 17, 898, 972, 1032
TaiI ACGT 4 cut(s) 231, 405, 606, 1224
TaqI TCGA 4 cut(s) 12, 581, 644, 685
TatI WGTACW 1 cut(s) 431
TfiI GAWTC 1 cut(s) 585
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 4 cut(s) 928, 977, 985, 1068
TseFI GTSAC 3 cut(s) 966, 1131, 1148
TseI GCWGC 2 cut(s) 886, 975
Tsp45I GTSAC 3 cut(s) 966, 1131, 1148
TspDTI ATGAA 7 cut(s) 323, 508, 582, 662, 683, 923, 1230
TspMI CCCGGG 1 cut(s) 205
TspRI CASTG 4 cut(s) 928, 977, 985, 1068
VpaK11BI GGWCC 1 cut(s) 652
XapI RAATTY 4 cut(s) 698, 773, 827, 930
XceI RCATGY 1 cut(s) 661
XmaI CCCGGG 1 cut(s) 205
XspI CTAG 1 cut(s) 35
ZraI GACGTC 1 cut(s) 604
Zsp2I ATGCAT 1 cut(s) 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.