Rh2AG353800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000124
Physical Location & Seq
Reverse (-)
52279018 .. 52280019
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG353800.1

Sequence Viewer

Length: 825 bp
ATGGCAGGGGATGACAATACGGTTGCAGTTCTTAAGTTGATCGGATTACGCAACAATGCATGGAAGGTGCATGTGGTGTCCAAACGTAGTGGAAAGTTTTTTTCTCGCGGATGGGACTGGTTTCTACGGGTCACTTGTGGAGTAGAAGAGACGGTGACACTTATGTTTCGTTACGAAGGAAATATGACCTTTAGTTTGGTTCGATTCGGAGAGCACGGACAGGTTCTGTACTTTCTTCCATGGCTGACTGCAGACAATCCTTCCAACAATCTGAAACATATCTCTGATGACTTTCTAGGGTTTGCCGTCAACACATGGGGACCTAGTGAAACCCCGCAAAACTGCATCCGTTATCAGCCTGCAATCGGATATGGCTTCCTGCTTTCAAGACTAATATGCGATGGAGTGATACTGGGGAAGATAACATTTGAGCTGTTTCAGAAGAAAGGGCAATACTGGATGACCGAACCCACGATGGTTGACGATGCACTCGTGTTCGGTGAAGGATGGTATAATTTTGTCAATGCAATTGGTTTAGACGAGACGAAATGTGCAATCTTCAAATATGCTGGAAACTTGGCATTCACTGTAAATGTCTTTGACATGCCCCTGGGTACCATTGCAATGGATAATGTGCCTGCTCGAATAATTGGAGGTTTCGAGGAAGGCCACATGGAGGGGGTTTCATATAATACGGTCGTTGGAGACATGATTGGCGACGGAGGGGAACTCATGGATCTGCATCGTACCCTTCTGCCGCGACCGAATTGCCTGTTGATGATCCAAAAGGGTCATGGGGTTAGTACTTTAATATTGCCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

30.64

Weight (kDa)

5.51

Isoelectric Point (pI)

25.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 614
AccB1I GGYRCC 1 cut(s) 614
AccII CGCG 2 cut(s) 108, 760
AciI CCGC 3 cut(s) 108, 335, 758
AclWI GGATC 2 cut(s) 744, 775
AfaI GTAC 4 cut(s) 230, 616, 748, 805
AfiI CCNNNNNNNGG 2 cut(s) 365, 676
AflII CTTAAG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 387, 562
AjnI CCWGG 1 cut(s) 609
AluBI AGCT 1 cut(s) 433
AluI AGCT 1 cut(s) 433
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 3 cut(s) 143, 536, 699
AlwI GGATC 2 cut(s) 744, 775
AlwNI CAGNNNCTG 1 cut(s) 226
AoxI GGCC 1 cut(s) 667
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
Asp718I GGTACC 1 cut(s) 614
AspS9I GGNCC 1 cut(s) 320
AsuHPI GGTGA 2 cut(s) 166, 512
AvaII GGWCC 1 cut(s) 320
BanI GGYRCC 1 cut(s) 614
BauI CACGAG 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 4 cut(s) 105, 395, 469, 501
BceAI ACGGC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 750, 784
BciT130I CCWGG 1 cut(s) 611
BcoDI GTCTC 3 cut(s) 143, 536, 699
BfaI CTAG 2 cut(s) 296, 324
BfmI CTRYAG 1 cut(s) 249
BfrI CTTAAG 1 cut(s) 32
BisI GCNGC 1 cut(s) 758
BlsI GCNGC 1 cut(s) 759
BmcAI AGTACT 1 cut(s) 805
Bme1390I CCNGG 1 cut(s) 611
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 320
BmiI GGNNCC 2 cut(s) 321, 616
BmrFI CCNGG 1 cut(s) 611
BmrI ACTGGG 1 cut(s) 422
BmsI GCATC 3 cut(s) 354, 475, 751
BmuI ACTGGG 1 cut(s) 422
BplI GAGNNNNNCTC 2 cut(s) 714, 746
BsaBI GATNNNNATC 1 cut(s) 741
BsaJI CCNNGG 3 cut(s) 239, 609, 610
Bsc4I CCNNNNNNNGG 2 cut(s) 365, 676
Bse1I ACTGG 3 cut(s) 122, 417, 461
Bse3DI GCAATG 2 cut(s) 618, 630
Bse8I GATNNNNATC 1 cut(s) 741
BseBI CCWGG 1 cut(s) 611
BseDI CCNNGG 3 cut(s) 239, 609, 610
BseGI GGATG 5 cut(s) 16, 116, 345, 465, 512
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 2 cut(s) 365, 676
BseMI GCAATG 2 cut(s) 618, 630
BseNI ACTGG 3 cut(s) 122, 417, 461
Bsh1236I CGCG 2 cut(s) 108, 760
Bsh1285I CGRYCG 2 cut(s) 699, 764
BshFI GGCC 1 cut(s) 669
BshNI GGYRCC 1 cut(s) 614
BsiEI CGRYCG 2 cut(s) 699, 764
BsiHKAI GWGCWC 1 cut(s) 216
BslFI GGGAC 2 cut(s) 128, 333
BslI CCNNNNNNNGG 2 cut(s) 365, 676
BsmAI GTCTC 3 cut(s) 143, 536, 699
BsmBI CGTCTC 2 cut(s) 143, 536
BsmFI GGGAC 2 cut(s) 128, 333
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 1 cut(s) 669
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 3 cut(s) 39, 736, 780
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 3 cut(s) 108, 335, 758
BspANI GGCC 1 cut(s) 669
BspFNI CGCG 2 cut(s) 108, 760
BspLI GGNNCC 2 cut(s) 321, 616
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 2 cut(s) 744, 775
BspT107I GGYRCC 1 cut(s) 614
BspTI CTTAAG 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 618, 630
BsrI ACTGG 3 cut(s) 122, 417, 461
BssECI CCNNGG 3 cut(s) 239, 609, 610
BssMI GATC 3 cut(s) 39, 736, 780
BssSI CACGAG 1 cut(s) 491
BssT1I CCWWGG 1 cut(s) 239
Bst2BI CACGAG 1 cut(s) 491
Bst2UI CCWGG 1 cut(s) 611
Bst4CI ACNGT 4 cut(s) 22, 154, 589, 697
Bst6I CTCTTC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 360, 639
BstDSI CCRYGG 1 cut(s) 239
BstF5I GGATG 5 cut(s) 16, 116, 345, 465, 512
BstFNI CGCG 2 cut(s) 108, 760
BstKTI GATC 3 cut(s) 42, 739, 783
BstMAI GTCTC 3 cut(s) 143, 536, 699
BstMBI GATC 3 cut(s) 39, 736, 780
BstMCI CGRYCG 2 cut(s) 699, 764
BstNI CCWGG 1 cut(s) 611
BstNSI RCATGY 2 cut(s) 74, 607
BstSCI CCNGG 1 cut(s) 609
BstSFI CTRYAG 1 cut(s) 249
BstUI CGCG 2 cut(s) 108, 760
BstX2I RGATCY 1 cut(s) 736
BstXI CCANNNNNNTGG 1 cut(s) 625
BstYI RGATCY 1 cut(s) 736
BsuRI GGCC 1 cut(s) 669
BtgI CCRYGG 1 cut(s) 239
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 5 cut(s) 16, 116, 345, 465, 512
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 2 cut(s) 360, 639
CaiI CAGNNNCTG 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 320
Csp6I GTAC 4 cut(s) 229, 615, 747, 804
CspCI CAANNNNNGTGG 4 cut(s) 70, 105, 460, 495
CviAII CATG 9 cut(s) 60, 71, 240, 315, 604, 673, 709, 733, 794
CviJI RGCY 5 cut(s) 244, 358, 375, 433, 669
CviKI_1 RGCY 5 cut(s) 244, 358, 375, 433, 669
CviQI GTAC 4 cut(s) 229, 615, 747, 804
DpnI GATC 3 cut(s) 41, 738, 782
DpnII GATC 3 cut(s) 39, 736, 780
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 609
EcoT14I CCWWGG 1 cut(s) 239
EcoT22I ATGCAT 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 239
Esp3I CGTCTC 2 cut(s) 143, 536
FaeI CATG 9 cut(s) 63, 74, 243, 318, 607, 676, 712, 736, 797
FaqI GGGAC 2 cut(s) 128, 333
FatI CATG 9 cut(s) 59, 70, 239, 314, 603, 672, 708, 732, 793
FauI CCCGC 1 cut(s) 342
Fnu4HI GCNGC 1 cut(s) 758
FokI GGATG 5 cut(s) 23, 123, 332, 472, 519
Fsp4HI GCNGC 1 cut(s) 758
FspBI CTAG 2 cut(s) 296, 324
GluI GCNGC 1 cut(s) 758
HaeIII GGCC 1 cut(s) 669
Hin1II CATG 9 cut(s) 63, 74, 243, 318, 607, 676, 712, 736, 797
HincII GTYRAC 2 cut(s) 310, 481
HindII GTYRAC 2 cut(s) 310, 481
HinfI GANTC 1 cut(s) 204
HphI GGTGA 2 cut(s) 166, 512
Hpy166II GTNNAC 2 cut(s) 310, 481
Hpy188I TCNGA 6 cut(s) 44, 209, 273, 286, 368, 441
Hpy188III TCNNGA 1 cut(s) 387
Hpy8I GTNNAC 2 cut(s) 310, 481
Hpy99I CGWCG 1 cut(s) 722
HpyAV CCTTC 6 cut(s) 58, 170, 270, 497, 659, 761
HpyCH4III ACNGT 4 cut(s) 22, 154, 589, 697
HpyCH4IV ACGT 1 cut(s) 85
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 9 cut(s) 63, 74, 243, 318, 607, 676, 712, 736, 797
KpnI GGTACC 1 cut(s) 618
Kzo9I GATC 3 cut(s) 39, 736, 780
LweI GCATC 3 cut(s) 354, 475, 751
MaeI CTAG 2 cut(s) 296, 324
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 3 cut(s) 130, 154, 170
MalI GATC 3 cut(s) 41, 738, 782
MboI GATC 3 cut(s) 39, 736, 780
MboII GAAGA 5 cut(s) 158, 227, 430, 454, 550
MfeI CAATTG 1 cut(s) 528
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 4 cut(s) 514, 528, 648, 766
MmeI TCCRAC 2 cut(s) 288, 682
MnlI CCTC 4 cut(s) 647, 655, 670, 716
Mph1103I ATGCAT 1 cut(s) 61
MseI TTAA 2 cut(s) 33, 809
MslI CAYNNNNRTG 1 cut(s) 623
MspCI CTTAAG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 611
MunI CAATTG 1 cut(s) 528
Mva1269I GAATGC 1 cut(s) 581
MvaI CCWGG 1 cut(s) 611
MvnI CGCG 2 cut(s) 108, 760
NcoI CCATGG 1 cut(s) 239
NdeII GATC 3 cut(s) 39, 736, 780
NlaIII CATG 9 cut(s) 63, 74, 243, 318, 607, 676, 712, 736, 797
NlaIV GGNNCC 2 cut(s) 321, 616
NmuCI GTSAC 2 cut(s) 130, 154
NsiI ATGCAT 1 cut(s) 61
NspI RCATGY 2 cut(s) 74, 607
PasI CCCWGGG 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PctI GAATGC 1 cut(s) 581
PfeI GAWTC 1 cut(s) 204
PkrI GCNGC 1 cut(s) 759
PpuMI RGGWCCY 1 cut(s) 320
Psp5II RGGWCCY 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 609
PspGI CCWGG 1 cut(s) 609
PspN4I GGNNCC 2 cut(s) 321, 616
PspPI GGNCC 1 cut(s) 320
PspPPI RGGWCCY 1 cut(s) 320
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 736
RsaI GTAC 4 cut(s) 230, 616, 748, 805
RsaNI GTAC 4 cut(s) 229, 615, 747, 804
RseI CAYNNNNRTG 1 cut(s) 623
SaqAI TTAA 2 cut(s) 33, 809
SatI GCNGC 1 cut(s) 758
Sau3AI GATC 3 cut(s) 39, 736, 780
Sau96I GGNCC 1 cut(s) 320
ScaI AGTACT 1 cut(s) 805
ScrFI CCNGG 1 cut(s) 611
SduI GDGCHC 1 cut(s) 216
SetI ASST 7 cut(s) 69, 88, 191, 225, 325, 435, 658
SfaNI GCATC 3 cut(s) 354, 475, 751
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 4 cut(s) 514, 528, 648, 766
SsiI CCGC 3 cut(s) 108, 335, 758
SspI AATATT 1 cut(s) 813
SspMI CTAG 2 cut(s) 296, 324
StyD4I CCNGG 1 cut(s) 609
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 4 cut(s) 22, 154, 589, 697
TaiI ACGT 1 cut(s) 88
TaqI TCGA 3 cut(s) 202, 643, 660
TaqII GACCGA 2 cut(s) 479, 778
TasI AATT 4 cut(s) 514, 528, 648, 766
TatI WGTACW 2 cut(s) 228, 803
TauI GCSGC 1 cut(s) 760
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 2 cut(s) 33, 809
Tru9I TTAA 2 cut(s) 33, 809
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 2 cut(s) 130, 154
Tsp45I GTSAC 2 cut(s) 130, 154
TspDTI ATGAA 1 cut(s) 675
TspGWI ACGGA 3 cut(s) 231, 338, 735
TspRI CASTG 1 cut(s) 592
Vha464I CTTAAG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 320
XceI RCATGY 2 cut(s) 74, 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 791
XspI CTAG 2 cut(s) 296, 324
ZrmI AGTACT 1 cut(s) 805
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.