Rh7AG353300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000124
Physical Location & Seq
Forward (+)
45201396 .. 45202308
913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG353300.1

Sequence Viewer

Length: 636 bp
ATGCACGGTCCACTCTTTGGGGGAGGTGGAAATAGCGAAGTATTGAAGAGATCCAGCGAACTGGTACCCAGAGATTTGGTGACCAAGTCCAGCGTCAAAGAGTTCGTATTGACCACCCGGGGTCTGTCCCCTGAAAAGGTGACTGCGATATCTAAACTGGGGCTTGCGAGTCTTCTGGATATTGGGTGCACTACCCAGGTCAGCCTTGTGTGGAGGTTGATGGTCCACAACATTGACCTCTCTAACCACACCGTGTCCATTCACGGTCACAACTTTCCCGTCAATGCCTTGGAGTTCAGTCGTATAATGGGAGTGCTTGACGGGGGTGTAGATATAGAGCTGGGGGCTACCATAGACGCAGGAGAATACGGTGTGTTTGTGCAGGACTTGTGCGACGGAGAAGGTTGGATACAGGTCTATCTGTTGAAGGAGATTGTCATGAACCGGAGTGATGTGGATGACACGTTCCGTATTGCATTTACAATGCTTGCATTGGCTCTGGTGCTGTGCCCAGGCACCGGTGACGACGTCGATCCATCCTTTGTATTCCCGCTTTTGGAGACGCGGGAGATTAGGAAGAAAAATTGGGCTTCATTCTGTGTGAAAACATTACTGGAAGCTGTTACTGCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

211

Amino Acids

23.01

Weight (kDa)

5.07

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 531
Acc65I GGTACC 1 cut(s) 64
AccB1I GGYRCC 2 cut(s) 64, 515
AccB7I CCANNNNNTGG 1 cut(s) 17
AccII CGCG 1 cut(s) 565
AciI CCGC 2 cut(s) 551, 565
AclWI GGATC 2 cut(s) 45, 527
AcyI GRCGYC 1 cut(s) 528
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 4 cut(s) 17, 136, 518, 556
AflIII ACRYGT 1 cut(s) 462
AgeI ACCGGT 1 cut(s) 518
AgsI TTSAA 2 cut(s) 46, 427
AjnI CCWGG 2 cut(s) 195, 511
AloI GAACNNNNNNTCC 2 cut(s) 449, 481
AluBI AGCT 2 cut(s) 340, 620
AluI AGCT 2 cut(s) 340, 620
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 554
Alw44I GTGCAC 1 cut(s) 187
AlwI GGATC 2 cut(s) 45, 527
Ama87I CYCGRG 1 cut(s) 117
ApaLI GTGCAC 1 cut(s) 187
AsiGI ACCGGT 1 cut(s) 518
Asp718I GGTACC 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 8, 223
AsuC2I CCSGG 2 cut(s) 118, 119
AsuHPI GGTGA 3 cut(s) 91, 151, 533
AvaI CYCGRG 1 cut(s) 117
AvaII GGWCC 2 cut(s) 8, 223
BaeGI GKGCMC 2 cut(s) 191, 512
BanI GGYRCC 2 cut(s) 64, 515
BarI GAAGNNNNNNTAC 2 cut(s) 393, 425
BbsI GAAGAC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 191
BccI CCATC 2 cut(s) 214, 544
BciT130I CCWGG 2 cut(s) 197, 513
BciVI GTATCC 1 cut(s) 402
BcnI CCSGG 2 cut(s) 118, 119
BcoDI GTCTC 1 cut(s) 554
BfuI GTATCC 1 cut(s) 402
Bme1390I CCNGG 4 cut(s) 118, 119, 197, 513
Bme18I GGWCC 2 cut(s) 8, 223
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 2 cut(s) 8, 223
BmiI GGNNCC 2 cut(s) 66, 517
BmrFI CCNGG 4 cut(s) 118, 119, 197, 513
BmrI ACTGGG 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 164
BpuMI CCSGG 2 cut(s) 118, 119
BsaHI GRCGYC 1 cut(s) 528
BsaJI CCNNGG 5 cut(s) 117, 118, 195, 288, 511
BsaWI WCCGGW 2 cut(s) 444, 518
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 136, 518, 556
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 3 cut(s) 66, 162, 618
BseBI CCWGG 2 cut(s) 197, 513
BseDI CCNNGG 5 cut(s) 117, 118, 195, 288, 511
BseGI GGATG 2 cut(s) 463, 536
BseLI CCNNNNNNNGG 4 cut(s) 17, 136, 518, 556
BseNI ACTGG 3 cut(s) 66, 162, 618
BseSI GKGCMC 2 cut(s) 191, 512
BseYI CCCAGC 1 cut(s) 340
BsgI GTGCAG 1 cut(s) 401
Bsh1236I CGCG 1 cut(s) 565
BshNI GGYRCC 2 cut(s) 64, 515
BshTI ACCGGT 1 cut(s) 518
BsiHKAI GWGCWC 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 3 cut(s) 118, 445, 519
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 4 cut(s) 17, 136, 518, 556
BsmAI GTCTC 1 cut(s) 554
BsmBI CGTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 191, 512
Bsp143I GATC 2 cut(s) 50, 532
BspACI CCGC 2 cut(s) 551, 565
BspFNI CGCG 1 cut(s) 565
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 2 cut(s) 66, 517
BspPI GGATC 2 cut(s) 45, 527
BspT107I GGYRCC 2 cut(s) 64, 515
BsrFI RCCGGY 1 cut(s) 518
BsrI ACTGG 3 cut(s) 66, 162, 618
BssAI RCCGGY 1 cut(s) 518
BssECI CCNNGG 5 cut(s) 117, 118, 195, 288, 511
BssMI GATC 2 cut(s) 50, 532
BssNI GRCGYC 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 2 cut(s) 197, 513
Bst4CI ACNGT 4 cut(s) 8, 253, 266, 371
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 528
BstC8I GCNNGC 2 cut(s) 165, 489
BstEII GGTNACC 1 cut(s) 79
BstF5I GGATG 2 cut(s) 463, 536
BstFNI CGCG 1 cut(s) 565
BstKTI GATC 2 cut(s) 53, 535
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 2 cut(s) 50, 532
BstMWI GCNNNNNNNGC 1 cut(s) 626
BstNI CCWGG 2 cut(s) 197, 513
BstPI GGTNACC 1 cut(s) 79
BstSCI CCNGG 4 cut(s) 116, 117, 195, 511
BstSLI GKGCMC 2 cut(s) 191, 512
BstUI CGCG 1 cut(s) 565
BstV2I GAAGAC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 50
BstXI CCANNNNNNTGG 2 cut(s) 61, 76
BstYI RGATCY 1 cut(s) 50
BsuI GTATCC 1 cut(s) 402
BtsCI GGATG 2 cut(s) 463, 536
Cac8I GCNNGC 2 cut(s) 165, 489
CciI TCATGA 1 cut(s) 438
Cfr10I RCCGGY 1 cut(s) 518
Cfr13I GGNCC 2 cut(s) 8, 223
Cfr9I CCCGGG 1 cut(s) 117
CseI GACGC 3 cut(s) 82, 365, 571
Csp6I GTAC 1 cut(s) 65
CspAI ACCGGT 1 cut(s) 518
CviAII CATG 1 cut(s) 439
CviJI RGCY 7 cut(s) 163, 204, 340, 347, 497, 590, 620
CviKI_1 RGCY 7 cut(s) 163, 204, 340, 347, 497, 590, 620
CviQI GTAC 1 cut(s) 65
DpnI GATC 2 cut(s) 52, 534
DpnII GATC 2 cut(s) 50, 532
DraIII CACNNNGTG 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 288
Eco32I GATATC 1 cut(s) 150
Eco47I GGWCC 2 cut(s) 8, 223
Eco88I CYCGRG 1 cut(s) 117
Eco91I GGTNACC 1 cut(s) 79
EcoO65I GGTNACC 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 195, 511
EcoRV GATATC 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 554
FaeI CATG 1 cut(s) 442
FaiI YATR 4 cut(s) 305, 335, 353, 440
FaqI GGGAC 1 cut(s) 112
FatI CATG 1 cut(s) 438
FauI CCCGC 2 cut(s) 558, 558
FokI GGATG 2 cut(s) 470, 523
GsaI CCCAGC 1 cut(s) 344
HapII CCGG 3 cut(s) 118, 445, 519
HgaI GACGC 3 cut(s) 82, 365, 571
Hin1I GRCGYC 1 cut(s) 528
Hin1II CATG 1 cut(s) 442
HinfI GANTC 1 cut(s) 169
HpaII CCGG 3 cut(s) 118, 445, 519
HphI GGTGA 3 cut(s) 91, 151, 533
Hpy166II GTNNAC 3 cut(s) 11, 189, 226
Hpy188III TCNNGA 2 cut(s) 176, 439
Hpy8I GTNNAC 3 cut(s) 11, 189, 226
Hpy99I CGWCG 3 cut(s) 398, 530, 533
HpyAV CCTTC 2 cut(s) 395, 421
HpyCH4III ACNGT 4 cut(s) 8, 253, 266, 371
HpyCH4IV ACGT 2 cut(s) 464, 528
HpyCH4V TGCA 5 cut(s) 4, 189, 382, 476, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 626
HpySE526I ACGT 2 cut(s) 464, 528
Hsp92I GRCGYC 1 cut(s) 528
Hsp92II CATG 1 cut(s) 442
KpnI GGTACC 1 cut(s) 68
Kzo9I GATC 2 cut(s) 50, 532
MaeII ACGT 2 cut(s) 464, 528
MaeIII GTNAC 5 cut(s) 79, 139, 266, 521, 622
MalI GATC 2 cut(s) 52, 534
MboI GATC 2 cut(s) 50, 532
MboII GAAGA 3 cut(s) 58, 164, 589
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 2 cut(s) 191, 512
MluCI AATT 1 cut(s) 583
MlyI GAGTC 1 cut(s) 178
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 3 cut(s) 17, 207, 248
MspI CCGG 3 cut(s) 118, 445, 519
MspR9I CCNGG 4 cut(s) 118, 119, 197, 513
MvaI CCWGG 2 cut(s) 197, 513
MvnI CGCG 1 cut(s) 565
MwoI GCNNNNNNNGC 1 cut(s) 626
NciI CCSGG 2 cut(s) 118, 119
NdeII GATC 2 cut(s) 50, 532
NlaIII CATG 1 cut(s) 442
NlaIV GGNNCC 2 cut(s) 66, 517
NmuCI GTSAC 4 cut(s) 79, 139, 266, 521
PagI TCATGA 1 cut(s) 438
PflFI GACNNNGTC 2 cut(s) 85, 527
PflMI CCANNNNNTGG 1 cut(s) 17
PinAI ACCGGT 1 cut(s) 518
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 195, 511
PspEI GGTNACC 1 cut(s) 79
PspFI CCCAGC 1 cut(s) 340
PspGI CCWGG 2 cut(s) 195, 511
PspN4I GGNNCC 2 cut(s) 66, 517
PspPI GGNCC 2 cut(s) 8, 223
PsuI RGATCY 1 cut(s) 50
PsyI GACNNNGTC 2 cut(s) 85, 527
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
Sau3AI GATC 2 cut(s) 50, 532
Sau96I GGNCC 2 cut(s) 8, 223
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 4 cut(s) 118, 119, 197, 513
SduI GDGCHC 2 cut(s) 191, 512
SgrAI CRCCGGYG 1 cut(s) 518
SinI GGWCC 2 cut(s) 8, 223
SmaI CCCGGG 1 cut(s) 119
Sse9I AATT 1 cut(s) 583
SsiI CCGC 2 cut(s) 551, 565
StyD4I CCNGG 4 cut(s) 116, 117, 195, 511
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 4 cut(s) 8, 253, 266, 371
TaiI ACGT 2 cut(s) 467, 531
TaqI TCGA 1 cut(s) 531
TasI AATT 1 cut(s) 583
TseFI GTSAC 4 cut(s) 79, 139, 266, 521
Tsp45I GTSAC 4 cut(s) 79, 139, 266, 521
TspDTI ATGAA 2 cut(s) 455, 582
TspGWI ACGGA 2 cut(s) 411, 458
TspMI CCCGGG 1 cut(s) 117
Tth111I GACNNNGTC 2 cut(s) 85, 527
Van91I CCANNNNNTGG 1 cut(s) 17
VneI GTGCAC 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 8, 223
XmaI CCCGGG 1 cut(s) 117
ZraI GACGTC 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.