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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 774 |
| Acc36I | ACCTGC | 1 cut(s) | 865 |
| AccI | GTMKAC | 1 cut(s) | 32 |
| AccII | CGCG | 1 cut(s) | 1043 |
| AciI | CCGC | 5 cut(s) | 239, 389, 592, 741, 937 |
| AclWI | GGATC | 3 cut(s) | 92, 137, 828 |
| AcsI | RAATTY | 2 cut(s) | 155, 866 |
| AcuI | CTGAAG | 1 cut(s) | 782 |
| AcyI | GRCGYC | 1 cut(s) | 771 |
| AfaI | GTAC | 3 cut(s) | 63, 853, 891 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 468, 518, 519, 559 |
| AflIII | ACRYGT | 1 cut(s) | 163 |
| AgsI | TTSAA | 7 cut(s) | 77, 106, 281, 331, 542, 1062, 1103 |
| AjiI | CACGTC | 1 cut(s) | 164 |
| AleI | CACNNNNGTG | 1 cut(s) | 183 |
| AluBI | AGCT | 1 cut(s) | 138 |
| AluI | AGCT | 1 cut(s) | 138 |
| Alw21I | GWGCWC | 1 cut(s) | 602 |
| Alw26I | GTCTC | 2 cut(s) | 762, 773 |
| Alw44I | GTGCAC | 1 cut(s) | 598 |
| AlwI | GGATC | 3 cut(s) | 92, 137, 828 |
| Ama87I | CYCGRG | 1 cut(s) | 373 |
| AoxI | GGCC | 4 cut(s) | 15, 22, 667, 757 |
| ApaLI | GTGCAC | 1 cut(s) | 598 |
| ApeKI | GCWGC | 2 cut(s) | 409, 1094 |
| ApoI | RAATTY | 2 cut(s) | 155, 866 |
| AspA2I | CCTAGG | 2 cut(s) | 25, 43 |
| AspS9I | GGNCC | 3 cut(s) | 15, 245, 589 |
| AsuC2I | CCSGG | 3 cut(s) | 14, 374, 375 |
| AsuII | TTCGAA | 1 cut(s) | 439 |
| AvaI | CYCGRG | 1 cut(s) | 373 |
| AvaII | GGWCC | 2 cut(s) | 245, 589 |
| AvrII | CCTAGG | 2 cut(s) | 25, 43 |
| BaeGI | GKGCMC | 1 cut(s) | 602 |
| BauI | CACGAG | 1 cut(s) | 776 |
| Bbv12I | GWGCWC | 1 cut(s) | 602 |
| BbvI | GCAGC | 2 cut(s) | 396, 1081 |
| BccI | CCATC | 4 cut(s) | 176, 251, 412, 791 |
| BceAI | ACGGC | 1 cut(s) | 446 |
| BciVI | GTATCC | 1 cut(s) | 415 |
| BcnI | CCSGG | 3 cut(s) | 14, 374, 375 |
| BcoDI | GTCTC | 2 cut(s) | 762, 773 |
| BfaI | CTAG | 3 cut(s) | 26, 44, 692 |
| BfuAI | ACCTGC | 1 cut(s) | 865 |
| BfuI | GTATCC | 1 cut(s) | 415 |
| BisI | GCNGC | 2 cut(s) | 410, 1095 |
| BlnI | CCTAGG | 2 cut(s) | 25, 43 |
| BlsI | GCNGC | 2 cut(s) | 411, 1096 |
| Bme1390I | CCNGG | 3 cut(s) | 14, 374, 375 |
| Bme18I | GGWCC | 2 cut(s) | 245, 589 |
| BmeT110I | CYCGRG | 1 cut(s) | 373 |
| BmgBI | CACGTC | 1 cut(s) | 164 |
| BmgT120I | GGNCC | 3 cut(s) | 15, 245, 589 |
| BmiI | GGNNCC | 1 cut(s) | 590 |
| BmrFI | CCNGG | 3 cut(s) | 14, 374, 375 |
| BmsI | GCATC | 2 cut(s) | 38, 1063 |
| Bpu14I | TTCGAA | 1 cut(s) | 439 |
| BpuMI | CCSGG | 3 cut(s) | 14, 374, 375 |
| BsaHI | GRCGYC | 1 cut(s) | 771 |
| BsaI | GGTCTC | 1 cut(s) | 773 |
| BsaJI | CCNNGG | 4 cut(s) | 25, 43, 373, 513 |
| BsaWI | WCCGGW | 1 cut(s) | 580 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 468, 518, 519, 559 |
| Bse3DI | GCAATG | 2 cut(s) | 351, 1089 |
| BseDI | CCNNGG | 4 cut(s) | 25, 43, 373, 513 |
| BseGI | GGATG | 5 cut(s) | 10, 53, 157, 325, 530 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 468, 518, 519, 559 |
| BseMI | GCAATG | 2 cut(s) | 351, 1089 |
| BseRI | GAGGAG | 2 cut(s) | 234, 239 |
| BseSI | GKGCMC | 1 cut(s) | 602 |
| BseXI | GCAGC | 2 cut(s) | 396, 1081 |
| BsgI | GTGCAG | 2 cut(s) | 893, 1035 |
| Bsh1236I | CGCG | 1 cut(s) | 1043 |
| BshFI | GGCC | 4 cut(s) | 17, 24, 669, 759 |
| BsiHKAI | GWGCWC | 1 cut(s) | 602 |
| BsiHKCI | CYCGRG | 1 cut(s) | 373 |
| BsiSI | CCGG | 3 cut(s) | 13, 374, 581 |
| BslFI | GGGAC | 2 cut(s) | 602, 1058 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 468, 518, 519, 559 |
| BsmAI | GTCTC | 2 cut(s) | 762, 773 |
| BsmBI | CGTCTC | 1 cut(s) | 762 |
| BsmFI | GGGAC | 2 cut(s) | 602, 1058 |
| BsmI | GAATGC | 1 cut(s) | 743 |
| BsnI | GGCC | 4 cut(s) | 17, 24, 669, 759 |
| Bso31I | GGTCTC | 1 cut(s) | 773 |
| BsoBI | CYCGRG | 1 cut(s) | 373 |
| Bsp119I | TTCGAA | 1 cut(s) | 439 |
| Bsp1286I | GDGCHC | 1 cut(s) | 602 |
| Bsp143I | GATC | 4 cut(s) | 69, 97, 129, 820 |
| BspACI | CCGC | 5 cut(s) | 239, 389, 592, 741, 937 |
| BspANI | GGCC | 4 cut(s) | 17, 24, 669, 759 |
| BspFNI | CGCG | 1 cut(s) | 1043 |
| BspLI | GGNNCC | 1 cut(s) | 590 |
| BspMI | ACCTGC | 1 cut(s) | 865 |
| BspPI | GGATC | 3 cut(s) | 92, 137, 828 |
| BspT104I | TTCGAA | 1 cut(s) | 439 |
| BspTNI | GGTCTC | 1 cut(s) | 773 |
| BsrDI | GCAATG | 2 cut(s) | 351, 1089 |
| BssECI | CCNNGG | 4 cut(s) | 25, 43, 373, 513 |
| BssMI | GATC | 4 cut(s) | 69, 97, 129, 820 |
| BssNAI | GTATAC | 1 cut(s) | 33 |
| BssNI | GRCGYC | 1 cut(s) | 771 |
| BssSI | CACGAG | 1 cut(s) | 776 |
| BssT1I | CCWWGG | 2 cut(s) | 25, 43 |
| Bst1107I | GTATAC | 1 cut(s) | 33 |
| Bst2BI | CACGAG | 1 cut(s) | 776 |
| Bst4CI | ACNGT | 6 cut(s) | 85, 277, 285, 685, 972, 1013 |
| Bst6I | CTCTTC | 3 cut(s) | 482, 692, 707 |
| BstACI | GRCGYC | 1 cut(s) | 771 |
| BstBI | TTCGAA | 1 cut(s) | 439 |
| BstC8I | GCNNGC | 1 cut(s) | 1028 |
| BstDSI | CCRYGG | 1 cut(s) | 513 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 557 |
| BstF5I | GGATG | 5 cut(s) | 10, 53, 157, 325, 530 |
| BstFNI | CGCG | 1 cut(s) | 1043 |
| BstKTI | GATC | 4 cut(s) | 72, 100, 132, 823 |
| BstMAI | GTCTC | 2 cut(s) | 762, 773 |
| BstMBI | GATC | 4 cut(s) | 69, 97, 129, 820 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 14, 350, 458 |
| BstNSI | RCATGY | 2 cut(s) | 829, 1030 |
| BstSCI | CCNGG | 3 cut(s) | 12, 372, 373 |
| BstSLI | GKGCMC | 1 cut(s) | 602 |
| BstUI | CGCG | 1 cut(s) | 1043 |
| BstV1I | GCAGC | 2 cut(s) | 396, 1081 |
| BstZ17I | GTATAC | 1 cut(s) | 33 |
| BsuI | GTATCC | 1 cut(s) | 415 |
| BsuRI | GGCC | 4 cut(s) | 17, 24, 669, 759 |
| BtgI | CCRYGG | 1 cut(s) | 513 |
| BtrI | CACGTC | 1 cut(s) | 164 |
| BtsCI | GGATG | 5 cut(s) | 10, 53, 157, 325, 530 |
| BtsI | GCAGTG | 1 cut(s) | 1023 |
| BtsIMutI | CAGTG | 4 cut(s) | 353, 413, 1018, 1023 |
| BveI | ACCTGC | 1 cut(s) | 865 |
| Cac8I | GCNNGC | 1 cut(s) | 1028 |
| Cfr13I | GGNCC | 3 cut(s) | 15, 245, 589 |
| Cfr9I | CCCGGG | 1 cut(s) | 373 |
| CseI | GACGC | 1 cut(s) | 1049 |
| Csp6I | GTAC | 3 cut(s) | 62, 852, 890 |
| CviAII | CATG | 7 cut(s) | 688, 734, 787, 826, 1006, 1027, 1082 |
| CviJI | RGCY | 6 cut(s) | 17, 24, 138, 452, 669, 759 |
| CviKI_1 | RGCY | 6 cut(s) | 17, 24, 138, 452, 669, 759 |
| CviQI | GTAC | 3 cut(s) | 62, 852, 890 |
| DpnI | GATC | 4 cut(s) | 71, 99, 131, 822 |
| DpnII | GATC | 4 cut(s) | 69, 97, 129, 820 |
| Eam1104I | CTCTTC | 3 cut(s) | 482, 692, 707 |
| EarI | CTCTTC | 3 cut(s) | 482, 692, 707 |
| Eco130I | CCWWGG | 2 cut(s) | 25, 43 |
| Eco147I | AGGCCT | 1 cut(s) | 24 |
| Eco31I | GGTCTC | 1 cut(s) | 773 |
| Eco47I | GGWCC | 2 cut(s) | 245, 589 |
| Eco57I | CTGAAG | 1 cut(s) | 782 |
| Eco88I | CYCGRG | 1 cut(s) | 373 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 557 |
| EcoT14I | CCWWGG | 2 cut(s) | 25, 43 |
| ErhI | CCWWGG | 2 cut(s) | 25, 43 |
| Esp3I | CGTCTC | 1 cut(s) | 762 |
| FaeI | CATG | 7 cut(s) | 691, 737, 790, 829, 1009, 1030, 1085 |
| FaqI | GGGAC | 2 cut(s) | 602, 1058 |
| FatI | CATG | 7 cut(s) | 687, 733, 786, 825, 1005, 1026, 1081 |
| FauI | CCCGC | 1 cut(s) | 930 |
| FblI | GTMKAC | 1 cut(s) | 32 |
| Fnu4HI | GCNGC | 2 cut(s) | 410, 1095 |
| FokI | GGATG | 5 cut(s) | 17, 60, 164, 332, 537 |
| Fsp4HI | GCNGC | 2 cut(s) | 410, 1095 |
| FspBI | CTAG | 3 cut(s) | 26, 44, 692 |
| GluI | GCNGC | 2 cut(s) | 410, 1095 |
| HaeIII | GGCC | 4 cut(s) | 17, 24, 669, 759 |
| HapII | CCGG | 3 cut(s) | 13, 374, 581 |
| HgaI | GACGC | 1 cut(s) | 1049 |
| Hin1I | GRCGYC | 1 cut(s) | 771 |
| Hin1II | CATG | 7 cut(s) | 691, 737, 790, 829, 1009, 1030, 1085 |
| HinfI | GANTC | 2 cut(s) | 121, 270 |
| HpaII | CCGG | 3 cut(s) | 13, 374, 581 |
| Hpy166II | GTNNAC | 3 cut(s) | 33, 600, 775 |
| Hpy188I | TCNGA | 1 cut(s) | 948 |
| Hpy188III | TCNNGA | 3 cut(s) | 331, 646, 750 |
| Hpy8I | GTNNAC | 3 cut(s) | 33, 600, 775 |
| HpyAV | CCTTC | 6 cut(s) | 257, 497, 811, 982, 1015, 1026 |
| HpyCH4III | ACNGT | 6 cut(s) | 85, 277, 285, 685, 972, 1013 |
| HpyCH4IV | ACGT | 4 cut(s) | 163, 771, 804, 996 |
| HpyCH4V | TGCA | 8 cut(s) | 51, 344, 600, 796, 859, 874, 1016, 1097 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 14, 350, 458 |
| HpySE526I | ACGT | 4 cut(s) | 163, 771, 804, 996 |
| Hsp92I | GRCGYC | 1 cut(s) | 771 |
| Hsp92II | CATG | 7 cut(s) | 691, 737, 790, 829, 1009, 1030, 1085 |
| Kzo9I | GATC | 4 cut(s) | 69, 97, 129, 820 |
| LpnPI | CCDG | 9 cut(s) | 26, 387, 481, 594, 608, 648, 714, 773, 860 |
| Lsp1109I | GCAGC | 2 cut(s) | 396, 1081 |
| LweI | GCATC | 2 cut(s) | 38, 1063 |
| MaeI | CTAG | 3 cut(s) | 26, 44, 692 |
| MaeII | ACGT | 4 cut(s) | 163, 771, 804, 996 |
| MaeIII | GTNAC | 2 cut(s) | 298, 924 |
| MalI | GATC | 4 cut(s) | 71, 99, 131, 822 |
| MboI | GATC | 4 cut(s) | 69, 97, 129, 820 |
| MboII | GAAGA | 6 cut(s) | 279, 499, 530, 661, 709, 724 |
| MfeI | CAATTG | 1 cut(s) | 195 |
| MhlI | GDGCHC | 1 cut(s) | 602 |
| MluCI | AATT | 7 cut(s) | 106, 155, 195, 445, 639, 866, 965 |
| MmeI | TCCRAC | 3 cut(s) | 223, 780, 954 |
| MseI | TTAA | 4 cut(s) | 87, 465, 473, 807 |
| MslI | CAYNNNNRTG | 1 cut(s) | 183 |
| MspI | CCGG | 3 cut(s) | 13, 374, 581 |
| MspR9I | CCNGG | 3 cut(s) | 14, 374, 375 |
| MunI | CAATTG | 1 cut(s) | 195 |
| Mva1269I | GAATGC | 1 cut(s) | 743 |
| MvnI | CGCG | 1 cut(s) | 1043 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 14, 350, 458 |
| NciI | CCSGG | 3 cut(s) | 14, 374, 375 |
| NdeII | GATC | 4 cut(s) | 69, 97, 129, 820 |
| NlaIII | CATG | 7 cut(s) | 691, 737, 790, 829, 1009, 1030, 1085 |
| NlaIV | GGNNCC | 1 cut(s) | 590 |
| NmuCI | GTSAC | 2 cut(s) | 298, 924 |
| NspI | RCATGY | 2 cut(s) | 829, 1030 |
| NspV | TTCGAA | 1 cut(s) | 439 |
| OliI | CACNNNNGTG | 1 cut(s) | 183 |
| PaeI | GCATGC | 1 cut(s) | 1030 |
| PceI | AGGCCT | 1 cut(s) | 24 |
| PctI | GAATGC | 1 cut(s) | 743 |
| PfeI | GAWTC | 2 cut(s) | 121, 270 |
| PkrI | GCNGC | 2 cut(s) | 411, 1096 |
| PspN4I | GGNNCC | 1 cut(s) | 590 |
| PspPI | GGNCC | 3 cut(s) | 15, 245, 589 |
| RsaI | GTAC | 3 cut(s) | 63, 853, 891 |
| RsaNI | GTAC | 3 cut(s) | 62, 852, 890 |
| RseI | CAYNNNNRTG | 1 cut(s) | 183 |
| SaqAI | TTAA | 4 cut(s) | 87, 465, 473, 807 |
| SatI | GCNGC | 2 cut(s) | 410, 1095 |
| Sau3AI | GATC | 4 cut(s) | 69, 97, 129, 820 |
| Sau96I | GGNCC | 3 cut(s) | 15, 245, 589 |
| ScrFI | CCNGG | 3 cut(s) | 14, 374, 375 |
| SduI | GDGCHC | 1 cut(s) | 602 |
| SfaNI | GCATC | 2 cut(s) | 38, 1063 |
| SfuI | TTCGAA | 1 cut(s) | 439 |
| SinI | GGWCC | 2 cut(s) | 245, 589 |
| SmaI | CCCGGG | 1 cut(s) | 375 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 183 |
| SphI | GCATGC | 1 cut(s) | 1030 |
| Sse9I | AATT | 7 cut(s) | 106, 155, 195, 445, 639, 866, 965 |
| SseBI | AGGCCT | 1 cut(s) | 24 |
| SsiI | CCGC | 5 cut(s) | 239, 389, 592, 741, 937 |
| SspMI | CTAG | 3 cut(s) | 26, 44, 692 |
| StuI | AGGCCT | 1 cut(s) | 24 |
| StyD4I | CCNGG | 3 cut(s) | 12, 372, 373 |
| StyI | CCWWGG | 2 cut(s) | 25, 43 |
| TaaI | ACNGT | 6 cut(s) | 85, 277, 285, 685, 972, 1013 |
| TaiI | ACGT | 4 cut(s) | 166, 774, 807, 999 |
| TaqI | TCGA | 2 cut(s) | 439, 633 |
| TasI | AATT | 7 cut(s) | 106, 155, 195, 445, 639, 866, 965 |
| TatI | WGTACW | 1 cut(s) | 851 |
| TfiI | GAWTC | 2 cut(s) | 121, 270 |
| Tru1I | TTAA | 4 cut(s) | 87, 465, 473, 807 |
| Tru9I | TTAA | 4 cut(s) | 87, 465, 473, 807 |
| TscAI | CASTG | 4 cut(s) | 360, 420, 1018, 1023 |
| TseFI | GTSAC | 2 cut(s) | 298, 924 |
| TseI | GCWGC | 2 cut(s) | 409, 1094 |
| Tsp45I | GTSAC | 2 cut(s) | 298, 924 |
| TspDTI | ATGAA | 8 cut(s) | 168, 444, 651, 750, 830, 851, 921, 1057 |
| TspGWI | ACGGA | 2 cut(s) | 68, 90 |
| TspMI | CCCGGG | 1 cut(s) | 373 |
| TspRI | CASTG | 4 cut(s) | 360, 420, 1018, 1023 |
| VneI | GTGCAC | 1 cut(s) | 598 |
| VpaK11BI | GGWCC | 2 cut(s) | 245, 589 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 557 |
| XapI | RAATTY | 2 cut(s) | 155, 866 |
| XceI | RCATGY | 2 cut(s) | 829, 1030 |
| XmaI | CCCGGG | 1 cut(s) | 373 |
| XmaJI | CCTAGG | 2 cut(s) | 25, 43 |
| XmiI | GTMKAC | 1 cut(s) | 32 |
| XspI | CTAG | 3 cut(s) | 26, 44, 692 |
| ZraI | GACGTC | 1 cut(s) | 772 |