Rh7AG353100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000124
Physical Location & Seq
Forward (+)
45184733 .. 45185338
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG353100.1

Sequence Viewer

Length: 492 bp
ATGATGAATGTCAGCCAATTCGCTGCTGTGCCCCCACCACAAGAAGTTCCAGAGTTGCAGCAGGTCGATGACCATGTGGCGGATATGCCGGGGATGCAGGAGGTAAATGCTGATGAGGCTGAGCAGGATATGGACATTGGTGGTGTAGATGGGGTCGGTTTGGGGGCTTTGGGGGATTCTATTAATGGGCCTGCGTACGAGGAGGTTGTCGGTGACTACCAACGTCTCCCTCATTGTGATGTCAGGATTCAGCAAGGTCATGGAGCATTTCTCACAAAAGATGCTCGTTATCTGTTTCCTAGGAAGGGTAGCGCAGGTGTTAAGTTGCAAAGGTCAGACGGAGCAGTGTGGGATATCGGGGTCGCGCCTAGCGACGACACTCACTTCCTCACCCAGGGCTACGGTAAATTCAAGGAGGTCAATGGACTTTGCAGGGGTCAGCTGCTCCAACTGTATATCGTCTCAAGACGGAGGTTCGTATTCGAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.88

Weight (kDa)

4.69

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 101 - 161 4.3e-06 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 305
Acc36I ACCTGC 2 cut(s) 52, 305
AccII CGCG 1 cut(s) 365
AciI CCGC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 407
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 3 cut(s) 79, 305, 394
AgsI TTSAA 1 cut(s) 412
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 1 cut(s) 442
AluI AGCT 1 cut(s) 442
Alw26I GTCTC 2 cut(s) 230, 466
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 3 cut(s) 23, 58, 442
ApoI RAATTY 1 cut(s) 407
AseI ATTAAT 1 cut(s) 183
AspA2I CCTAGG 1 cut(s) 299
AspLEI GCGC 2 cut(s) 314, 367
AspS9I GGNCC 1 cut(s) 188
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 224, 382
AvrII CCTAGG 1 cut(s) 299
BaeGI GKGCMC 1 cut(s) 33
BbvI GCAGC 3 cut(s) 10, 70, 429
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 395
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 230, 466
BfaI CTAG 2 cut(s) 300, 369
BfuAI ACCTGC 2 cut(s) 52, 305
BisI GCNGC 3 cut(s) 24, 59, 443
BlnI CCTAGG 1 cut(s) 299
BlpI GCTNAGC 1 cut(s) 120
BlsI GCNGC 3 cut(s) 25, 60, 444
Bme1390I CCNGG 2 cut(s) 90, 395
BmgT120I GGNCC 1 cut(s) 188
BmrFI CCNGG 2 cut(s) 90, 395
BmsI GCATC 2 cut(s) 84, 271
BplI GAGNNNNNCTC 2 cut(s) 255, 287
Bpu1102I GCTNAGC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 448
BpuMI CCSGG 1 cut(s) 90
BsaJI CCNNGG 4 cut(s) 89, 299, 393, 394
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 305, 394
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 4 cut(s) 89, 299, 393, 394
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 3 cut(s) 79, 305, 394
BseMII CTCAG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 3 cut(s) 10, 70, 429
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 89
BsiWI CGTACG 1 cut(s) 195
BslI CCNNNNNNNGG 3 cut(s) 79, 305, 394
BsmAI GTCTC 2 cut(s) 230, 466
BsmBI CGTCTC 2 cut(s) 230, 466
BsnI GGCC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 33
Bsp1720I GCTNAGC 1 cut(s) 120
BspACI CCGC 1 cut(s) 80
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 1 cut(s) 112
BspFNI CGCG 1 cut(s) 365
BspMI ACCTGC 2 cut(s) 52, 305
BssECI CCNNGG 4 cut(s) 89, 299, 393, 394
BssT1I CCWWGG 1 cut(s) 299
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 2 cut(s) 404, 453
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 120
BstENI CCTNNNNNAGG 1 cut(s) 392
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 365
BstHHI GCGC 2 cut(s) 314, 367
BstMAI GTCTC 2 cut(s) 230, 466
BstMWI GCNNNNNNNGC 2 cut(s) 94, 116
BstNI CCWGG 1 cut(s) 395
BstSCI CCNGG 2 cut(s) 88, 393
BstSLI GKGCMC 1 cut(s) 33
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 3 cut(s) 10, 70, 429
BsuRI GGCC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
BveI ACCTGC 2 cut(s) 52, 305
Cac8I GCNNGC 1 cut(s) 192
CfoI GCGC 2 cut(s) 314, 367
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 196
CviAII CATG 2 cut(s) 74, 260
CviJI RGCY 6 cut(s) 15, 119, 167, 190, 399, 442
CviKI_1 RGCY 6 cut(s) 15, 119, 167, 190, 399, 442
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 120
EciI GGCGGA 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 299
Eco32I GATATC 1 cut(s) 355
EcoNI CCTNNNNNAGG 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 393
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
Esp3I CGTCTC 2 cut(s) 230, 466
FaeI CATG 2 cut(s) 77, 263
FaiI YATR 6 cut(s) 75, 86, 131, 261, 456, 490
FatI CATG 2 cut(s) 73, 259
Fnu4HI GCNGC 3 cut(s) 24, 59, 443
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 3 cut(s) 24, 59, 443
FspBI CTAG 2 cut(s) 300, 369
GlaI GCGC 2 cut(s) 313, 366
GluI GCNGC 3 cut(s) 24, 59, 443
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 89
HhaI GCGC 2 cut(s) 314, 367
Hin1II CATG 2 cut(s) 77, 263
Hin6I GCGC 2 cut(s) 312, 365
HinP1I GCGC 2 cut(s) 312, 365
HinfI GANTC 2 cut(s) 176, 247
HpaII CCGG 1 cut(s) 89
HphI GGTGA 2 cut(s) 224, 382
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 4 cut(s) 50, 244, 465, 484
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 404, 453
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 4 cut(s) 58, 97, 328, 432
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 116
HpyF3I CTNAG 1 cut(s) 120
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 2 cut(s) 77, 263
HspAI GCGC 2 cut(s) 312, 365
LmnI GCTCC 3 cut(s) 263, 341, 450
Lsp1109I GCAGC 3 cut(s) 10, 70, 429
LweI GCATC 2 cut(s) 84, 271
MaeI CTAG 2 cut(s) 300, 369
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 2 cut(s) 17, 407
MmeI TCCRAC 1 cut(s) 472
MnlI CCTC 8 cut(s) 94, 109, 193, 196, 240, 398, 409, 465
MseI TTAA 2 cut(s) 183, 321
MslI CAYNNNNRTG 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 442
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 2 cut(s) 90, 395
MvaI CCWGG 1 cut(s) 395
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 2 cut(s) 94, 116
NciI CCSGG 1 cut(s) 90
NlaIII CATG 2 cut(s) 77, 263
NmuCI GTSAC 1 cut(s) 212
PaqCI CACCTGC 1 cut(s) 305
PasI CCCWGGG 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PfeI GAWTC 2 cut(s) 176, 247
Pfl23II CGTACG 1 cut(s) 195
PkrI GCNGC 3 cut(s) 25, 60, 444
PshBI ATTAAT 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 393
PspGI CCWGG 1 cut(s) 393
PspLI CGTACG 1 cut(s) 195
PspPI GGNCC 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 442
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 2 cut(s) 183, 321
SatI GCNGC 3 cut(s) 24, 59, 443
Sau96I GGNCC 1 cut(s) 188
ScrFI CCNGG 2 cut(s) 90, 395
SduI GDGCHC 1 cut(s) 33
SfaNI GCATC 2 cut(s) 84, 271
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 463
SmoI CTYRAG 1 cut(s) 463
Sse9I AATT 2 cut(s) 17, 407
SsiI CCGC 1 cut(s) 80
SspMI CTAG 2 cut(s) 300, 369
StyD4I CCNGG 2 cut(s) 88, 393
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 2 cut(s) 404, 453
TaiI ACGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 66, 483
TasI AATT 2 cut(s) 17, 407
TfiI GAWTC 2 cut(s) 176, 247
Tru1I TTAA 2 cut(s) 183, 321
Tru9I TTAA 2 cut(s) 183, 321
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 3 cut(s) 23, 58, 442
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 2 cut(s) 354, 484
TspRI CASTG 1 cut(s) 351
VspI ATTAAT 1 cut(s) 183
XagI CCTNNNNNAGG 1 cut(s) 392
XapI RAATTY 1 cut(s) 407
XmaJI CCTAGG 1 cut(s) 299
XspI CTAG 2 cut(s) 300, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.