Rh2AG354000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000124
Physical Location & Seq
Forward (+)
52289751 .. 52290199
449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG354000.1

Sequence Viewer

Length: 375 bp
ATGGAGCATCACCTCGACGTCAACTACCCATATTTCTCAGTGATGGTTCGGCTGCCGACTCAGAATGTGGACAAGGCGAAAATTCCTCCGGCGTTTATGGAGAGGCACATGAGGGACTTTACCGGGATGCGGATCGAGCTGCGTTTGTCCGGACTGCGTCGGGTTCCGTACCGCATCGGCCTGACAGCACAAAGGGATCACCGGTGGATGCACGGAAGTTGGGAGTGCTTCATCAAGAAGATTCGTAACCACGAAGGGATGATGCTGTTGGTTTTCCGATACCGCGGTCATGGCCGGTTCACAATACGCCGGTTCCTATCAGATGGGACTCTGATGTACAGAACCCCAAACCCCCCCCCCCCCCAGGGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.87

Weight (kDa)

10.85

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 21
Acc65I GGTACC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 368
AccII CGCG 1 cut(s) 285
AccIII TCCGGA 1 cut(s) 149
AciI CCGC 4 cut(s) 130, 172, 283, 285
AclWI GGATC 2 cut(s) 140, 204
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 3 cut(s) 170, 338, 370
AfiI CCNNNNNNNGG 3 cut(s) 129, 364, 365
AgeI ACCGGT 1 cut(s) 201
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
AlwI GGATC 2 cut(s) 140, 204
Aor13HI TCCGGA 1 cut(s) 149
AoxI GGCC 2 cut(s) 178, 292
ApeKI GCWGC 2 cut(s) 52, 139
ApoI RAATTY 1 cut(s) 81
AsiGI ACCGGT 1 cut(s) 201
Asp718I GGTACC 1 cut(s) 368
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 191
BaeI ACNNNNGTAYC 2 cut(s) 271, 304
BanI GGYRCC 1 cut(s) 368
BbvI GCAGC 2 cut(s) 39, 126
BccI CCATC 2 cut(s) 37, 317
BciT130I CCWGG 1 cut(s) 365
BcnI CCSGG 1 cut(s) 124
BisI GCNGC 2 cut(s) 53, 140
BlsI GCNGC 2 cut(s) 54, 141
Bme1390I CCNGG 2 cut(s) 124, 365
BmiI GGNNCC 3 cut(s) 165, 314, 370
BmrFI CCNGG 2 cut(s) 124, 365
BmsI GCATC 5 cut(s) 16, 117, 183, 198, 252
BpuMI CCSGG 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 3 cut(s) 283, 363, 364
BsaWI WCCGGW 2 cut(s) 149, 201
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 364, 365
Bse118I RCCGGY 3 cut(s) 201, 294, 309
Bse8I GATNNNNATC 1 cut(s) 131
BseAI TCCGGA 1 cut(s) 149
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 3 cut(s) 283, 363, 364
BseGI GGATG 3 cut(s) 132, 213, 264
BseJI GATNNNNATC 1 cut(s) 131
BseLI CCNNNNNNNGG 3 cut(s) 129, 364, 365
BseMII CTCAG 2 cut(s) 51, 74
BseXI GCAGC 2 cut(s) 39, 126
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 2 cut(s) 180, 294
BshNI GGYRCC 1 cut(s) 368
BshTI ACCGGT 1 cut(s) 201
BsiSI CCGG 6 cut(s) 89, 123, 150, 202, 295, 310
BslFI GGGAC 2 cut(s) 128, 340
BslI CCNNNNNNNGG 3 cut(s) 129, 364, 365
BsmFI GGGAC 2 cut(s) 128, 340
BsnI GGCC 2 cut(s) 180, 294
Bsp13I TCCGGA 1 cut(s) 149
Bsp1407I TGTACA 1 cut(s) 336
Bsp143I GATC 2 cut(s) 132, 196
BspACI CCGC 4 cut(s) 130, 172, 283, 285
BspANI GGCC 2 cut(s) 180, 294
BspCNI CTCAG 2 cut(s) 50, 73
BspEI TCCGGA 1 cut(s) 149
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 165, 314, 370
BspPI GGATC 2 cut(s) 140, 204
BspT107I GGYRCC 1 cut(s) 368
BsrFI RCCGGY 3 cut(s) 201, 294, 309
BsrGI TGTACA 1 cut(s) 336
BssAI RCCGGY 3 cut(s) 201, 294, 309
BssECI CCNNGG 3 cut(s) 283, 363, 364
BssMI GATC 2 cut(s) 132, 196
BssNI GRCGYC 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 365
BstACI GRCGYC 1 cut(s) 18
BstAUI TGTACA 1 cut(s) 336
BstDEI CTNAG 2 cut(s) 37, 60
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 3 cut(s) 132, 213, 264
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 2 cut(s) 135, 199
BstMBI GATC 2 cut(s) 132, 196
BstMWI GCNNNNNNNGC 2 cut(s) 136, 291
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 2 cut(s) 122, 363
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 39, 126
BsuRI GGCC 2 cut(s) 180, 294
BtgI CCRYGG 1 cut(s) 283
BtsCI GGATG 3 cut(s) 132, 213, 264
BtsIMutI CAGTG 1 cut(s) 45
Cfr10I RCCGGY 3 cut(s) 201, 294, 309
Cfr42I CCGCGG 1 cut(s) 286
CseI GACGC 1 cut(s) 146
Csp6I GTAC 3 cut(s) 169, 337, 369
CspAI ACCGGT 1 cut(s) 201
CviAII CATG 2 cut(s) 109, 290
CviJI RGCY 4 cut(s) 52, 139, 180, 294
CviKI_1 RGCY 4 cut(s) 52, 139, 180, 294
CviQI GTAC 3 cut(s) 169, 337, 369
DdeI CTNAG 2 cut(s) 37, 60
DpnI GATC 2 cut(s) 134, 198
DpnII GATC 2 cut(s) 132, 196
EaeI YGGCCR 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 363
FaeI CATG 2 cut(s) 112, 293
FaiI YATR 4 cut(s) 31, 98, 110, 291
FaqI GGGAC 2 cut(s) 128, 340
FatI CATG 2 cut(s) 108, 289
Fnu4HI GCNGC 2 cut(s) 53, 140
FokI GGATG 3 cut(s) 139, 220, 271
Fsp4HI GCNGC 2 cut(s) 53, 140
GluI GCNGC 2 cut(s) 53, 140
HaeIII GGCC 2 cut(s) 180, 294
HapII CCGG 6 cut(s) 89, 123, 150, 202, 295, 310
HgaI GACGC 1 cut(s) 146
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 2 cut(s) 112, 293
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 3 cut(s) 58, 241, 328
HpaII CCGG 6 cut(s) 89, 123, 150, 202, 295, 310
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 3 cut(s) 22, 70, 300
Hpy188I TCNGA 4 cut(s) 63, 278, 322, 333
Hpy188III TCNNGA 2 cut(s) 150, 235
Hpy8I GTNNAC 3 cut(s) 22, 70, 300
Hpy99I CGWCG 2 cut(s) 20, 162
HpyAV CCTTC 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 291
HpyF3I CTNAG 2 cut(s) 37, 60
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 2 cut(s) 112, 293
Kpn2I TCCGGA 1 cut(s) 149
KpnI GGTACC 1 cut(s) 372
KspI CCGCGG 1 cut(s) 286
Kzo9I GATC 2 cut(s) 132, 196
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 102, 136, 163, 194, 215, 308, 323, 350
Lsp1109I GCAGC 2 cut(s) 39, 126
LweI GCATC 5 cut(s) 16, 117, 183, 198, 252
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 245
MalI GATC 2 cut(s) 134, 198
MboI GATC 2 cut(s) 132, 196
MboII GAAGA 1 cut(s) 250
MluCI AATT 1 cut(s) 81
MlyI GAGTC 2 cut(s) 52, 322
MnlI CCTC 4 cut(s) 23, 96, 96, 105
MroI TCCGGA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 285
MspI CCGG 6 cut(s) 89, 123, 150, 202, 295, 310
MspR9I CCNGG 2 cut(s) 124, 365
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 136, 291
NciI CCSGG 1 cut(s) 124
NdeII GATC 2 cut(s) 132, 196
NlaIII CATG 2 cut(s) 112, 293
NlaIV GGNNCC 3 cut(s) 165, 314, 370
PasI CCCWGGG 1 cut(s) 364
PfeI GAWTC 1 cut(s) 241
PflFI GACNNNGTC 1 cut(s) 156
PinAI ACCGGT 1 cut(s) 201
PkrI GCNGC 2 cut(s) 54, 141
PleI GAGTC 2 cut(s) 52, 322
PpsI GAGTC 2 cut(s) 52, 322
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 3 cut(s) 165, 314, 370
PsyI GACNNNGTC 1 cut(s) 156
RsaI GTAC 3 cut(s) 170, 338, 370
RsaNI GTAC 3 cut(s) 169, 337, 369
SacII CCGCGG 1 cut(s) 286
SatI GCNGC 2 cut(s) 53, 140
Sau3AI GATC 2 cut(s) 132, 196
SchI GAGTC 2 cut(s) 52, 322
ScrFI CCNGG 2 cut(s) 124, 365
SetI ASST 4 cut(s) 15, 21, 141, 374
SfaNI GCATC 5 cut(s) 16, 117, 183, 198, 252
Sfr303I CCGCGG 1 cut(s) 286
SgrAI CRCCGGYG 1 cut(s) 201
SgrBI CCGCGG 1 cut(s) 286
Sse9I AATT 1 cut(s) 81
SsiI CCGC 4 cut(s) 130, 172, 283, 285
StyD4I CCNGG 2 cut(s) 122, 363
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 15, 135
TasI AATT 1 cut(s) 81
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 1 cut(s) 45
TseI GCWGC 2 cut(s) 52, 139
TspDTI ATGAA 1 cut(s) 220
TspGWI ACGGA 2 cut(s) 156, 228
TspRI CASTG 1 cut(s) 45
Tth111I GACNNNGTC 1 cut(s) 156
XapI RAATTY 1 cut(s) 81
ZraI GACGTC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.