Rh7AG353000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000124
Physical Location & Seq
Forward (+)
45184097 .. 45184678
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG353000.1

Sequence Viewer

Length: 450 bp
ATGCACGGAAATTGGGAGTCCTTCATCGAGAAGATTTGTAACCACGAAGGGATGATGTTGTTGGTTTTCCGATACCGCGGTGATGGCCTGTTCACAATACGCCGGCTCCGATCAGATGGGACTATGATGTACAGAAACCCAAAACCCCCCCTAGGCTACCTAATAGATCAGACCACCGACCTTGAAGTGCCCTTCCACGCCTTCGTATCCAACGTCTGGGACTACCATGTCACTGTGCCCGCCATCCCAAGGGGTCGCCTATACGCTGCCATCCACAATGATGGCGGTCCAGGACCCAGTCTCTTAAGGTGGGATTCAAGGAATGGGTTGATATTCTGGCATGTTAAGATGACTAGAGGTGTAGGTTGCATGACTTTTGGTGAAGGGTGGAACAGATTTGCCGCCCACAACCGGCTGCTTGATGGAAAGCGGTTTTGTGTCTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.25

Weight (kDa)

9.4

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccB7I CCANNNNNTGG 1 cut(s) 216
AccII CGCG 1 cut(s) 78
AciI CCGC 6 cut(s) 76, 78, 240, 285, 402, 430
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 4 cut(s) 152, 216, 249, 411
AflII CTTAAG 1 cut(s) 304
AgsI TTSAA 2 cut(s) 185, 318
AjnI CCWGG 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 305
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 266, 415
AspA2I CCTAGG 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 287, 293
AsuHPI GGTGA 2 cut(s) 92, 392
AvaII GGWCC 2 cut(s) 287, 293
AvrII CCTAGG 1 cut(s) 151
BaeGI GKGCMC 2 cut(s) 192, 240
BaeI ACNNNNGTAYC 2 cut(s) 64, 97
BbsI GAAGAC 1 cut(s) 433
BbvI GCAGC 2 cut(s) 253, 402
BccI CCATC 6 cut(s) 77, 110, 251, 275, 278, 416
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 2 cut(s) 152, 354
BfrI CTTAAG 1 cut(s) 304
BfuI GTATCC 1 cut(s) 217
BisI GCNGC 3 cut(s) 267, 402, 416
BlnI CCTAGG 1 cut(s) 151
BlsI GCNGC 3 cut(s) 268, 403, 417
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 287, 293
BmgT120I GGNCC 2 cut(s) 287, 293
BmiI GGNNCC 2 cut(s) 107, 295
BmrFI CCNGG 1 cut(s) 291
BmrI ACTGGG 1 cut(s) 291
BmuI ACTGGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 433
BsaJI CCNNGG 3 cut(s) 76, 151, 248
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 4 cut(s) 152, 216, 249, 411
Bse118I RCCGGY 2 cut(s) 102, 411
Bse1I ACTGG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 76, 151, 248
BseGI GGATG 3 cut(s) 57, 243, 270
BseLI CCNNNNNNNGG 4 cut(s) 152, 216, 249, 411
BseNI ACTGG 1 cut(s) 297
BseSI GKGCMC 2 cut(s) 192, 240
BseXI GCAGC 2 cut(s) 253, 402
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 87
BsiSI CCGG 2 cut(s) 103, 412
BslFI GGGAC 2 cut(s) 133, 233
BslI CCNNNNNNNGG 4 cut(s) 152, 216, 249, 411
BsmAI GTCTC 1 cut(s) 305
BsmFI GGGAC 2 cut(s) 133, 233
BsnI GGCC 1 cut(s) 87
Bsp1286I GDGCHC 2 cut(s) 192, 240
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 2 cut(s) 110, 166
BspACI CCGC 6 cut(s) 76, 78, 240, 285, 402, 430
BspANI GGCC 1 cut(s) 87
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 107, 295
BspTI CTTAAG 1 cut(s) 304
BsrFI RCCGGY 2 cut(s) 102, 411
BsrGI TGTACA 1 cut(s) 129
BsrI ACTGG 1 cut(s) 297
BssAI RCCGGY 2 cut(s) 102, 411
BssECI CCNNGG 3 cut(s) 76, 151, 248
BssMI GATC 2 cut(s) 110, 166
BssT1I CCWWGG 2 cut(s) 151, 248
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 235
BstAFI CTTAAG 1 cut(s) 304
BstAUI TGTACA 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 104, 240
BstDSI CCRYGG 1 cut(s) 76
BstF5I GGATG 3 cut(s) 57, 243, 270
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 2 cut(s) 113, 169
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 2 cut(s) 110, 166
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 289
BstSLI GKGCMC 2 cut(s) 192, 240
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 253, 402
BstV2I GAAGAC 1 cut(s) 433
BstXI CCANNNNNNTGG 1 cut(s) 281
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 76
BtsCI GGATG 3 cut(s) 57, 243, 270
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 104, 240
Cfr10I RCCGGY 2 cut(s) 102, 411
Cfr13I GGNCC 2 cut(s) 287, 293
Cfr42I CCGCGG 1 cut(s) 79
Csp6I GTAC 1 cut(s) 130
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 3 cut(s) 227, 341, 370
CviJI RGCY 4 cut(s) 87, 106, 156, 415
CviKI_1 RGCY 4 cut(s) 87, 106, 156, 415
CviQI GTAC 1 cut(s) 130
DpnI GATC 2 cut(s) 112, 168
DpnII GATC 2 cut(s) 110, 166
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
Eco130I CCWWGG 2 cut(s) 151, 248
Eco47I GGWCC 2 cut(s) 287, 293
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 151, 248
ErhI CCWWGG 2 cut(s) 151, 248
FaeI CATG 3 cut(s) 230, 344, 373
FaiI YATR 5 cut(s) 125, 228, 262, 342, 371
FaqI GGGAC 2 cut(s) 133, 233
FatI CATG 3 cut(s) 226, 340, 369
FauI CCCGC 1 cut(s) 247
Fnu4HI GCNGC 3 cut(s) 267, 402, 416
FokI GGATG 3 cut(s) 64, 230, 257
Fsp4HI GCNGC 3 cut(s) 267, 402, 416
FspBI CTAG 2 cut(s) 152, 354
GluI GCNGC 3 cut(s) 267, 402, 416
HaeIII GGCC 1 cut(s) 87
HapII CCGG 2 cut(s) 103, 412
Hin1II CATG 3 cut(s) 230, 344, 373
HinfI GANTC 2 cut(s) 17, 314
HpaII CCGG 2 cut(s) 103, 412
HphI GGTGA 2 cut(s) 92, 392
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 4 cut(s) 71, 110, 115, 171
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 5 cut(s) 31, 41, 202, 211, 377
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 2 cut(s) 4, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 3 cut(s) 230, 344, 373
KroI GCCGGC 1 cut(s) 102
KroNI GCCGGC 1 cut(s) 104
KspI CCGCGG 1 cut(s) 79
Kzo9I GATC 2 cut(s) 110, 166
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 8 cut(s) 101, 116, 202, 276, 303, 310, 322, 425
Lsp1109I GCAGC 2 cut(s) 253, 402
MaeI CTAG 2 cut(s) 152, 354
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 38, 229
MalI GATC 2 cut(s) 112, 168
MboI GATC 2 cut(s) 110, 166
MboII GAAGA 2 cut(s) 43, 433
MhlI GDGCHC 2 cut(s) 192, 240
MluCI AATT 1 cut(s) 10
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 1 cut(s) 350
MroNI GCCGGC 1 cut(s) 102
MseI TTAA 3 cut(s) 305, 345, 448
MslI CAYNNNNRTG 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 78
MspCI CTTAAG 1 cut(s) 304
MspI CCGG 2 cut(s) 103, 412
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 84
NaeI GCCGGC 1 cut(s) 104
NdeII GATC 2 cut(s) 110, 166
NgoMIV GCCGGC 1 cut(s) 102
NlaIII CATG 3 cut(s) 230, 344, 373
NlaIV GGNNCC 2 cut(s) 107, 295
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 344
PcsI WCGNNNNNNNCGW 2 cut(s) 106, 210
PdiI GCCGGC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 314
PflFI GACNNNGTC 1 cut(s) 297
PflMI CCANNNNNTGG 1 cut(s) 216
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 3 cut(s) 268, 403, 417
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 293
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 107, 295
PspPI GGNCC 2 cut(s) 287, 293
PspPPI RGGWCCY 1 cut(s) 293
PsyI GACNNNGTC 1 cut(s) 297
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 279
SacII CCGCGG 1 cut(s) 79
SaqAI TTAA 3 cut(s) 305, 345, 448
SatI GCNGC 3 cut(s) 267, 402, 416
Sau3AI GATC 2 cut(s) 110, 166
Sau96I GGNCC 2 cut(s) 287, 293
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 2 cut(s) 192, 240
SetI ASST 6 cut(s) 162, 183, 216, 311, 361, 367
Sfr303I CCGCGG 1 cut(s) 79
SgrBI CCGCGG 1 cut(s) 79
SinI GGWCC 2 cut(s) 287, 293
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 1 cut(s) 10
SsiI CCGC 6 cut(s) 76, 78, 240, 285, 402, 430
SspMI CTAG 2 cut(s) 152, 354
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 151, 248
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 10
TatI WGTACW 1 cut(s) 129
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 3 cut(s) 305, 345, 448
Tru9I TTAA 3 cut(s) 305, 345, 448
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 266, 415
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 13
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 1 cut(s) 238
Tth111I GACNNNGTC 1 cut(s) 297
Van91I CCANNNNNTGG 1 cut(s) 216
Vha464I CTTAAG 1 cut(s) 304
VpaK11BI GGWCC 2 cut(s) 287, 293
XceI RCATGY 1 cut(s) 344
XmaJI CCTAGG 1 cut(s) 151
XspI CTAG 2 cut(s) 152, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.