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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 512 |
| Acc36I | ACCTGC | 1 cut(s) | 215 |
| AciI | CCGC | 5 cut(s) | 237, 319, 720, 936, 1031 |
| AclWI | GGATC | 1 cut(s) | 1063 |
| AcsI | RAATTY | 3 cut(s) | 362, 437, 491 |
| AcuI | CTGAAG | 4 cut(s) | 278, 383, 924, 1296 |
| AdeI | CACNNNGTG | 1 cut(s) | 1004 |
| AfaI | GTAC | 4 cut(s) | 97, 770, 981, 1304 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 15, 16, 55, 325, 502 |
| AflIII | ACRYGT | 1 cut(s) | 637 |
| AgsI | TTSAA | 2 cut(s) | 38, 1221 |
| AjnI | CCWGG | 2 cut(s) | 1018, 1293 |
| AluBI | AGCT | 2 cut(s) | 866, 946 |
| AluI | AGCT | 2 cut(s) | 866, 946 |
| Alw26I | GTCTC | 1 cut(s) | 533 |
| AlwI | GGATC | 1 cut(s) | 1063 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 406 |
| AoxI | GGCC | 3 cut(s) | 163, 869, 1032 |
| ApeKI | GCWGC | 3 cut(s) | 550, 672, 837 |
| ApoI | RAATTY | 3 cut(s) | 362, 437, 491 |
| AspLEI | GCGC | 1 cut(s) | 1014 |
| AspS9I | GGNCC | 3 cut(s) | 316, 869, 1297 |
| AsuC2I | CCSGG | 1 cut(s) | 497 |
| AsuII | TTCGAA | 1 cut(s) | 743 |
| AvaII | GGWCC | 2 cut(s) | 316, 1297 |
| BbvI | GCAGC | 3 cut(s) | 562, 684, 849 |
| BccI | CCATC | 3 cut(s) | 277, 1042, 1223 |
| BceAI | ACGGC | 1 cut(s) | 856 |
| BciT130I | CCWGG | 2 cut(s) | 1020, 1295 |
| BcnI | CCSGG | 1 cut(s) | 497 |
| BcoDI | GTCTC | 1 cut(s) | 533 |
| BfmI | CTRYAG | 2 cut(s) | 583, 1306 |
| BfuAI | ACCTGC | 1 cut(s) | 215 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 877 |
| BglII | AGATCT | 1 cut(s) | 970 |
| BisI | GCNGC | 4 cut(s) | 551, 673, 838, 1032 |
| BlsI | GCNGC | 4 cut(s) | 552, 674, 839, 1033 |
| BmcAI | AGTACT | 1 cut(s) | 1304 |
| Bme1390I | CCNGG | 3 cut(s) | 497, 1020, 1295 |
| Bme18I | GGWCC | 2 cut(s) | 316, 1297 |
| BmgT120I | GGNCC | 3 cut(s) | 316, 869, 1297 |
| BmrFI | CCNGG | 3 cut(s) | 497, 1020, 1295 |
| BoxI | GACNNNNGTC | 2 cut(s) | 225, 655 |
| Bpu14I | TTCGAA | 1 cut(s) | 743 |
| BpuMI | CCSGG | 1 cut(s) | 497 |
| Bsa29I | ATCGAT | 2 cut(s) | 308, 1315 |
| BsaJI | CCNNGG | 2 cut(s) | 10, 561 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 15, 16, 55, 325, 502 |
| Bse1I | ACTGG | 1 cut(s) | 1300 |
| Bse3DI | GCAATG | 1 cut(s) | 771 |
| BseBI | CCWGG | 2 cut(s) | 1020, 1295 |
| BseCI | ATCGAT | 2 cut(s) | 308, 1315 |
| BseDI | CCNNGG | 2 cut(s) | 10, 561 |
| BseGI | GGATG | 3 cut(s) | 27, 271, 1234 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 15, 16, 55, 325, 502 |
| BseMI | GCAATG | 1 cut(s) | 771 |
| BseMII | CTCAG | 2 cut(s) | 888, 936 |
| BseNI | ACTGG | 1 cut(s) | 1300 |
| BseRI | GAGGAG | 1 cut(s) | 500 |
| BseXI | GCAGC | 3 cut(s) | 562, 684, 849 |
| BseYI | CCCAGC | 1 cut(s) | 866 |
| BsgI | GTGCAG | 1 cut(s) | 149 |
| Bsh1285I | CGRYCG | 1 cut(s) | 659 |
| BshFI | GGCC | 3 cut(s) | 165, 871, 1034 |
| BshVI | ATCGAT | 2 cut(s) | 308, 1315 |
| BsiEI | CGRYCG | 1 cut(s) | 659 |
| BsiSI | CCGG | 1 cut(s) | 496 |
| BslFI | GGGAC | 2 cut(s) | 77, 663 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 15, 16, 55, 325, 502 |
| BsmAI | GTCTC | 1 cut(s) | 533 |
| BsmFI | GGGAC | 2 cut(s) | 77, 663 |
| BsmI | GAATGC | 1 cut(s) | 239 |
| BsnI | GGCC | 3 cut(s) | 165, 871, 1034 |
| Bsp119I | TTCGAA | 1 cut(s) | 743 |
| Bsp1407I | TGTACA | 2 cut(s) | 95, 768 |
| Bsp143I | GATC | 4 cut(s) | 276, 305, 970, 1055 |
| BspACI | CCGC | 5 cut(s) | 237, 319, 720, 936, 1031 |
| BspANI | GGCC | 3 cut(s) | 165, 871, 1034 |
| BspCNI | CTCAG | 2 cut(s) | 889, 935 |
| BspDI | ATCGAT | 2 cut(s) | 308, 1315 |
| BspHI | TCATGA | 2 cut(s) | 229, 279 |
| BspMAI | CTGCAG | 1 cut(s) | 587 |
| BspMI | ACCTGC | 1 cut(s) | 215 |
| BspPI | GGATC | 1 cut(s) | 1063 |
| BspQI | GCTCTTC | 1 cut(s) | 188 |
| BspT104I | TTCGAA | 1 cut(s) | 743 |
| BsrDI | GCAATG | 1 cut(s) | 771 |
| BsrGI | TGTACA | 2 cut(s) | 95, 768 |
| BsrI | ACTGG | 1 cut(s) | 1300 |
| BssECI | CCNNGG | 2 cut(s) | 10, 561 |
| BssMI | GATC | 4 cut(s) | 276, 305, 970, 1055 |
| Bst2UI | CCWGG | 2 cut(s) | 1020, 1295 |
| Bst4CI | ACNGT | 6 cut(s) | 181, 562, 773, 894, 1004, 1217 |
| Bst6I | CTCTTC | 2 cut(s) | 188, 203 |
| BstAUI | TGTACA | 2 cut(s) | 95, 768 |
| BstBI | TTCGAA | 1 cut(s) | 743 |
| BstDEI | CTNAG | 5 cut(s) | 367, 453, 480, 897, 922 |
| BstDSI | CCRYGG | 2 cut(s) | 10, 561 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 53 |
| BstF5I | GGATG | 3 cut(s) | 27, 271, 1234 |
| BstHHI | GCGC | 1 cut(s) | 1014 |
| BstKTI | GATC | 4 cut(s) | 279, 308, 973, 1058 |
| BstMAI | GTCTC | 1 cut(s) | 533 |
| BstMBI | GATC | 4 cut(s) | 276, 305, 970, 1055 |
| BstMCI | CGRYCG | 1 cut(s) | 659 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 877 |
| BstNI | CCWGG | 2 cut(s) | 1020, 1295 |
| BstNSI | RCATGY | 2 cut(s) | 325, 641 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 225, 655 |
| BstSCI | CCNGG | 3 cut(s) | 495, 1018, 1293 |
| BstSFI | CTRYAG | 2 cut(s) | 583, 1306 |
| BstV1I | GCAGC | 3 cut(s) | 562, 684, 849 |
| BstX2I | RGATCY | 1 cut(s) | 970 |
| BstYI | RGATCY | 1 cut(s) | 970 |
| Bsu15I | ATCGAT | 2 cut(s) | 308, 1315 |
| BsuRI | GGCC | 3 cut(s) | 165, 871, 1034 |
| BsuTUI | ATCGAT | 2 cut(s) | 308, 1315 |
| BtgI | CCRYGG | 2 cut(s) | 10, 561 |
| BtsCI | GGATG | 3 cut(s) | 27, 271, 1234 |
| BtsI | GCAGTG | 2 cut(s) | 592, 847 |
| BtsIMutI | CAGTG | 5 cut(s) | 592, 778, 847, 930, 1009 |
| BveI | ACCTGC | 1 cut(s) | 215 |
| CaiI | CAGNNNCTG | 1 cut(s) | 406 |
| CciI | TCATGA | 2 cut(s) | 229, 279 |
| CfoI | GCGC | 1 cut(s) | 1014 |
| Cfr13I | GGNCC | 3 cut(s) | 316, 869, 1297 |
| ClaI | ATCGAT | 2 cut(s) | 308, 1315 |
| CseI | GACGC | 1 cut(s) | 230 |
| Csp6I | GTAC | 4 cut(s) | 96, 769, 980, 1303 |
| CviJI | RGCY | 9 cut(s) | 165, 553, 675, 866, 871, 880, 946, 1034, 1311 |
| CviKI_1 | RGCY | 9 cut(s) | 165, 553, 675, 866, 871, 880, 946, 1034, 1311 |
| CviQI | GTAC | 4 cut(s) | 96, 769, 980, 1303 |
| DdeI | CTNAG | 5 cut(s) | 367, 453, 480, 897, 922 |
| DpnI | GATC | 4 cut(s) | 278, 307, 972, 1057 |
| DpnII | GATC | 4 cut(s) | 276, 305, 970, 1055 |
| DraI | TTTAAA | 1 cut(s) | 810 |
| DraIII | CACNNNGTG | 1 cut(s) | 1004 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 512 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 512 |
| Eam1104I | CTCTTC | 2 cut(s) | 188, 203 |
| EarI | CTCTTC | 2 cut(s) | 188, 203 |
| Eco32I | GATATC | 1 cut(s) | 1287 |
| Eco47I | GGWCC | 2 cut(s) | 316, 1297 |
| Eco57I | CTGAAG | 4 cut(s) | 278, 383, 924, 1296 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 53 |
| EcoRII | CCWGG | 2 cut(s) | 1018, 1293 |
| EcoRV | GATATC | 1 cut(s) | 1287 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 538, 570 |
| FaqI | GGGAC | 2 cut(s) | 77, 663 |
| FauI | CCCGC | 2 cut(s) | 230, 929 |
| Fnu4HI | GCNGC | 4 cut(s) | 551, 673, 838, 1032 |
| FokI | GGATG | 3 cut(s) | 34, 278, 1241 |
| Fsp4HI | GCNGC | 4 cut(s) | 551, 673, 838, 1032 |
| GlaI | GCGC | 1 cut(s) | 1013 |
| GluI | GCNGC | 4 cut(s) | 551, 673, 838, 1032 |
| GsaI | CCCAGC | 1 cut(s) | 870 |
| HaeIII | GGCC | 3 cut(s) | 165, 871, 1034 |
| HapII | CCGG | 1 cut(s) | 496 |
| HgaI | GACGC | 1 cut(s) | 230 |
| HhaI | GCGC | 1 cut(s) | 1014 |
| Hin6I | GCGC | 1 cut(s) | 1012 |
| HinP1I | GCGC | 1 cut(s) | 1012 |
| HincII | GTYRAC | 2 cut(s) | 156, 1255 |
| HindII | GTYRAC | 2 cut(s) | 156, 1255 |
| HinfI | GANTC | 6 cut(s) | 249, 740, 899, 920, 995, 1240 |
| HpaII | CCGG | 1 cut(s) | 496 |
| Hpy166II | GTNNAC | 5 cut(s) | 98, 142, 156, 271, 1255 |
| Hpy188I | TCNGA | 5 cut(s) | 254, 661, 898, 904, 1291 |
| Hpy188III | TCNNGA | 5 cut(s) | 230, 246, 280, 401, 968 |
| Hpy8I | GTNNAC | 5 cut(s) | 98, 142, 156, 271, 1255 |
| HpyAV | CCTTC | 3 cut(s) | 307, 564, 953 |
| HpyCH4III | ACNGT | 6 cut(s) | 181, 562, 773, 894, 1004, 1217 |
| HpyCH4IV | ACGT | 1 cut(s) | 66 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 877 |
| HpyF3I | CTNAG | 5 cut(s) | 367, 453, 480, 897, 922 |
| HpySE526I | ACGT | 1 cut(s) | 66 |
| HspAI | GCGC | 1 cut(s) | 1012 |
| Kzo9I | GATC | 4 cut(s) | 276, 305, 970, 1055 |
| LguI | GCTCTTC | 1 cut(s) | 188 |
| LmnI | GCTCC | 1 cut(s) | 863 |
| Lsp1109I | GCAGC | 3 cut(s) | 562, 684, 849 |
| MaeII | ACGT | 1 cut(s) | 66 |
| MaeIII | GTNAC | 3 cut(s) | 617, 828, 1261 |
| MalI | GATC | 4 cut(s) | 278, 307, 972, 1057 |
| MboI | GATC | 4 cut(s) | 276, 305, 970, 1055 |
| MboII | GAAGA | 3 cut(s) | 26, 205, 220 |
| MflI | RGATCY | 1 cut(s) | 970 |
| MluCI | AATT | 6 cut(s) | 135, 362, 389, 437, 461, 491 |
| MlyI | GAGTC | 2 cut(s) | 908, 914 |
| MmeI | TCCRAC | 4 cut(s) | 168, 276, 450, 639 |
| MseI | TTAA | 3 cut(s) | 714, 809, 1089 |
| MslI | CAYNNNNRTG | 2 cut(s) | 759, 786 |
| MspI | CCGG | 1 cut(s) | 496 |
| MspR9I | CCNGG | 3 cut(s) | 497, 1020, 1295 |
| Mva1269I | GAATGC | 1 cut(s) | 239 |
| MvaI | CCWGG | 2 cut(s) | 1020, 1295 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 877 |
| NciI | CCSGG | 1 cut(s) | 497 |
| NdeII | GATC | 4 cut(s) | 276, 305, 970, 1055 |
| NmuCI | GTSAC | 3 cut(s) | 617, 828, 1261 |
| NspI | RCATGY | 2 cut(s) | 325, 641 |
| NspV | TTCGAA | 1 cut(s) | 743 |
| PagI | TCATGA | 2 cut(s) | 229, 279 |
| PciI | ACATGT | 1 cut(s) | 637 |
| PciSI | GCTCTTC | 1 cut(s) | 188 |
| PctI | GAATGC | 1 cut(s) | 239 |
| PfeI | GAWTC | 4 cut(s) | 249, 740, 995, 1240 |
| PflFI | GACNNNGTC | 1 cut(s) | 1259 |
| PkrI | GCNGC | 4 cut(s) | 552, 674, 839, 1033 |
| PleI | GAGTC | 2 cut(s) | 907, 914 |
| PpsI | GAGTC | 2 cut(s) | 907, 914 |
| PscI | ACATGT | 1 cut(s) | 637 |
| PshAI | GACNNNNGTC | 2 cut(s) | 225, 655 |
| Psp6I | CCWGG | 2 cut(s) | 1018, 1293 |
| PspFI | CCCAGC | 1 cut(s) | 866 |
| PspGI | CCWGG | 2 cut(s) | 1018, 1293 |
| PspPI | GGNCC | 3 cut(s) | 316, 869, 1297 |
| PstI | CTGCAG | 1 cut(s) | 587 |
| PstNI | CAGNNNCTG | 1 cut(s) | 406 |
| PsuI | RGATCY | 1 cut(s) | 970 |
| PsyI | GACNNNGTC | 1 cut(s) | 1259 |
| RsaI | GTAC | 4 cut(s) | 97, 770, 981, 1304 |
| RsaNI | GTAC | 4 cut(s) | 96, 769, 980, 1303 |
| RseI | CAYNNNNRTG | 2 cut(s) | 759, 786 |
| SapI | GCTCTTC | 1 cut(s) | 188 |
| SaqAI | TTAA | 3 cut(s) | 714, 809, 1089 |
| SatI | GCNGC | 4 cut(s) | 551, 673, 838, 1032 |
| Sau3AI | GATC | 4 cut(s) | 276, 305, 970, 1055 |
| Sau96I | GGNCC | 3 cut(s) | 316, 869, 1297 |
| ScaI | AGTACT | 1 cut(s) | 1304 |
| SchI | GAGTC | 2 cut(s) | 908, 914 |
| ScrFI | CCNGG | 3 cut(s) | 497, 1020, 1295 |
| SfcI | CTRYAG | 2 cut(s) | 583, 1306 |
| SfuI | TTCGAA | 1 cut(s) | 743 |
| SinI | GGWCC | 2 cut(s) | 316, 1297 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 759, 786 |
| Sse9I | AATT | 6 cut(s) | 135, 362, 389, 437, 461, 491 |
| SsiI | CCGC | 5 cut(s) | 237, 319, 720, 936, 1031 |
| StyD4I | CCNGG | 3 cut(s) | 495, 1018, 1293 |
| TaaI | ACNGT | 6 cut(s) | 181, 562, 773, 894, 1004, 1217 |
| TaiI | ACGT | 1 cut(s) | 69 |
| TaqI | TCGA | 3 cut(s) | 308, 743, 1315 |
| TaqII | GACCGA | 1 cut(s) | 645 |
| TasI | AATT | 6 cut(s) | 135, 362, 389, 437, 461, 491 |
| TatI | WGTACW | 3 cut(s) | 95, 768, 1302 |
| TauI | GCSGC | 1 cut(s) | 1034 |
| TfiI | GAWTC | 4 cut(s) | 249, 740, 995, 1240 |
| Tru1I | TTAA | 3 cut(s) | 714, 809, 1089 |
| Tru9I | TTAA | 3 cut(s) | 714, 809, 1089 |
| TscAI | CASTG | 5 cut(s) | 592, 778, 847, 930, 1009 |
| TseFI | GTSAC | 3 cut(s) | 617, 828, 1261 |
| TseI | GCWGC | 3 cut(s) | 550, 672, 837 |
| Tsp45I | GTSAC | 3 cut(s) | 617, 828, 1261 |
| TspDTI | ATGAA | 6 cut(s) | 17, 246, 326, 347, 798, 1199 |
| TspGWI | ACGGA | 1 cut(s) | 997 |
| TspRI | CASTG | 5 cut(s) | 592, 778, 847, 930, 1009 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1259 |
| VpaK11BI | GGWCC | 2 cut(s) | 316, 1297 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 53 |
| XapI | RAATTY | 3 cut(s) | 362, 437, 491 |
| XceI | RCATGY | 2 cut(s) | 325, 641 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1045 |
| ZrmI | AGTACT | 1 cut(s) | 1304 |