Rmu_co8264451.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8264451.1
OG0000124
Physical Location & Seq
Reverse (-)
1 .. 603
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8264451.1_g000001.1.cds

Sequence Viewer

Length: 499 bp
atggtgctgttactccagtacagacgcagcatgaagttccttgtgcgtaggtacgatgtcaacgaggctttgatgtacgcttctcccagaccccgatttggttgcccacctcccaaatcacagactatttcaggggcatccgacggcttcttttcggacgtttggaatgcctctgtcactgtgcctgtagtaccaagaggtgtcatgcatgatagactgattgcggatggggcccctgctcgatgtgaactccaatgggagacggtgcctccatgcctccagcaggtcgacattacaggaggacgtagggagctgcggttcgcttgtgcgtgggaacaatttcacttcgagaatcggttagacaaacgtcggtgctgtgtgttcacgtacctgggaaatctacgtttctccgttcttgtgttcgacactattcgaggtaacctgtgcacgacgccgctgcaatacacccaagctctagctgtgcccccacattttaggg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

19.07

Weight (kDa)

9.3

Isoelectric Point (pI)

60.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 274
AccB1I GGYRCC 1 cut(s) 265
AccI GTMKAC 1 cut(s) 288
AciI CCGC 3 cut(s) 224, 316, 455
AcyI GRCGYC 1 cut(s) 452
AfaI GTAC 5 cut(s) 20, 53, 77, 192, 389
AfiI CCNNNNNNNGG 2 cut(s) 98, 283
AjnI CCWGG 1 cut(s) 390
AloI GAACNNNNNNTCC 2 cut(s) 302, 334
AluBI AGCT 3 cut(s) 313, 473, 479
AluI AGCT 3 cut(s) 313, 473, 479
Alw21I GWGCWC 1 cut(s) 449
Alw26I GTCTC 1 cut(s) 254
Alw44I GTGCAC 1 cut(s) 445
AoxI GGCC 1 cut(s) 231
ApaI GGGCCC 1 cut(s) 235
ApaLI GTGCAC 1 cut(s) 445
ApeKI GCWGC 3 cut(s) 27, 313, 457
Asp700I GAANNNNTTC 1 cut(s) 339
AspS9I GGNCC 2 cut(s) 231, 232
BaeGI GKGCMC 3 cut(s) 235, 449, 486
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 449
BbvI GCAGC 3 cut(s) 39, 300, 444
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 160
BcgI CGANNNNNNTGC 4 cut(s) 84, 118, 439, 473
BciT130I CCWGG 1 cut(s) 392
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 476
BfmI CTRYAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 274
BisI GCNGC 4 cut(s) 28, 314, 455, 458
BlsI GCNGC 4 cut(s) 29, 315, 456, 459
Bme1390I CCNGG 1 cut(s) 392
BmgT120I GGNCC 2 cut(s) 231, 232
BmiI GGNNCC 4 cut(s) 232, 233, 234, 267
BmrFI CCNGG 1 cut(s) 392
BmsI GCATC 1 cut(s) 146
BoxI GACNNNNGTC 1 cut(s) 366
BpmI CTGGAG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 391
BsaXI ACNNNNNCTCC 4 cut(s) 253, 283, 302, 332
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 283
Bse1I ACTGG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 392
BseDI CCNNGG 1 cut(s) 391
BseGI GGATG 2 cut(s) 137, 232
BseLI CCNNNNNNNGG 2 cut(s) 98, 283
BseNI ACTGG 1 cut(s) 16
BseSI GKGCMC 3 cut(s) 235, 449, 486
BseXI GCAGC 3 cut(s) 39, 300, 444
BshFI GGCC 1 cut(s) 233
BshNI GGYRCC 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 449
BslI CCNNNNNNNGG 2 cut(s) 98, 283
BsmAI GTCTC 1 cut(s) 254
BsmBI CGTCTC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 1 cut(s) 233
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 3 cut(s) 235, 449, 486
BspACI CCGC 3 cut(s) 224, 316, 455
BspANI GGCC 1 cut(s) 233
BspLI GGNNCC 4 cut(s) 232, 233, 234, 267
BspMI ACCTGC 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 265
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 391
BssNI GRCGYC 1 cut(s) 452
Bst2UI CCWGG 1 cut(s) 392
Bst4CI ACNGT 2 cut(s) 181, 265
BstACI GRCGYC 1 cut(s) 452
BstBAI YACGTR 1 cut(s) 387
BstEII GGTNACC 1 cut(s) 437
BstENI CCTNNNNNAGG 1 cut(s) 281
BstF5I GGATG 2 cut(s) 137, 232
BstMAI GTCTC 1 cut(s) 254
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNI CCWGG 1 cut(s) 392
BstPAI GACNNNNGTC 1 cut(s) 366
BstPI GGTNACC 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 390
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 3 cut(s) 235, 449, 486
BstV1I GCAGC 3 cut(s) 39, 300, 444
BsuRI GGCC 1 cut(s) 233
BtsCI GGATG 2 cut(s) 137, 232
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 274
Cfr13I GGNCC 2 cut(s) 231, 232
CseI GACGC 2 cut(s) 33, 460
Csp6I GTAC 5 cut(s) 19, 52, 76, 191, 388
CviAII CATG 4 cut(s) 31, 205, 209, 273
CviJI RGCY 6 cut(s) 68, 147, 233, 313, 473, 479
CviKI_1 RGCY 6 cut(s) 68, 147, 233, 313, 473, 479
CviQI GTAC 5 cut(s) 19, 52, 76, 191, 388
Eco24I GRGCYC 1 cut(s) 235
Eco91I GGTNACC 1 cut(s) 437
EcoNI CCTNNNNNAGG 1 cut(s) 281
EcoO109I RGGNCCY 2 cut(s) 231, 232
EcoO65I GGTNACC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 390
EcoT22I ATGCAT 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 4 cut(s) 34, 208, 212, 276
FaiI YATR 4 cut(s) 32, 206, 210, 274
FatI CATG 4 cut(s) 30, 204, 208, 272
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 4 cut(s) 28, 314, 455, 458
FokI GGATG 2 cut(s) 124, 239
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 4 cut(s) 28, 314, 455, 458
FspBI CTAG 1 cut(s) 476
GluI GCNGC 4 cut(s) 28, 314, 455, 458
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 1 cut(s) 233
HgaI GACGC 2 cut(s) 33, 460
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 4 cut(s) 34, 208, 212, 276
HincII GTYRAC 2 cut(s) 61, 289
HindII GTYRAC 2 cut(s) 61, 289
HinfI GANTC 1 cut(s) 352
Hpy166II GTNNAC 5 cut(s) 61, 248, 289, 384, 447
Hpy188I TCNGA 2 cut(s) 142, 157
Hpy188III TCNNGA 1 cut(s) 349
Hpy8I GTNNAC 5 cut(s) 61, 248, 289, 384, 447
Hpy99I CGWCG 3 cut(s) 146, 372, 454
HpyCH4III ACNGT 2 cut(s) 181, 265
HpyCH4IV ACGT 5 cut(s) 159, 304, 367, 386, 403
HpyCH4V TGCA 3 cut(s) 208, 447, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpySE526I ACGT 5 cut(s) 159, 304, 367, 386, 403
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 4 cut(s) 34, 208, 212, 276
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 3 cut(s) 39, 300, 444
LweI GCATC 1 cut(s) 146
MaeI CTAG 1 cut(s) 476
MaeII ACGT 5 cut(s) 159, 304, 367, 386, 403
MaeIII GTNAC 3 cut(s) 9, 175, 437
MhlI GDGCHC 3 cut(s) 235, 449, 486
MluCI AATT 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 8 cut(s) 58, 120, 181, 191, 279, 287, 293, 428
Mph1103I ATGCAT 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 457
MspR9I CCNGG 1 cut(s) 392
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 1 cut(s) 392
MwoI GCNNNNNNNGC 1 cut(s) 230
NlaIII CATG 4 cut(s) 34, 208, 212, 276
NlaIV GGNNCC 4 cut(s) 232, 233, 234, 267
NmuCI GTSAC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PctI GAATGC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 352
PkrI GCNGC 4 cut(s) 29, 315, 456, 459
Ppu21I YACGTR 1 cut(s) 387
PshAI GACNNNNGTC 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 390
PspEI GGTNACC 1 cut(s) 437
PspGI CCWGG 1 cut(s) 390
PspN4I GGNNCC 4 cut(s) 232, 233, 234, 267
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 2 cut(s) 231, 232
RsaI GTAC 5 cut(s) 20, 53, 77, 192, 389
RsaNI GTAC 5 cut(s) 19, 52, 76, 191, 388
SalI GTCGAC 1 cut(s) 287
SatI GCNGC 4 cut(s) 28, 314, 455, 458
Sau96I GGNCC 2 cut(s) 231, 232
ScrFI CCNGG 1 cut(s) 392
SduI GDGCHC 3 cut(s) 235, 449, 486
SfaNI GCATC 1 cut(s) 146
SfcI CTRYAG 1 cut(s) 186
Sse9I AATT 1 cut(s) 338
SsiI CCGC 3 cut(s) 224, 316, 455
SspMI CTAG 1 cut(s) 476
StyD4I CCNGG 1 cut(s) 390
TaaI ACNGT 2 cut(s) 181, 265
TaiI ACGT 5 cut(s) 162, 307, 370, 389, 406
TaqI TCGA 5 cut(s) 241, 288, 348, 423, 433
TasI AATT 1 cut(s) 338
TatI WGTACW 1 cut(s) 18
TauI GCSGC 1 cut(s) 457
TfiI GAWTC 1 cut(s) 352
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 3 cut(s) 27, 313, 457
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 1 cut(s) 184
VneI GTGCAC 1 cut(s) 445
XagI CCTNNNNNAGG 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 1 cut(s) 476
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.