Rw1G010410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000124
Physical Location & Seq
Reverse (-)
23325863 .. 23329557
3695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010410.1

Sequence Viewer

Length: 1893 bp
ATGACATTATCTAAGATTGGCGAGTTCAAGGACACCGTGAACAACCTATCAGATGCAAAAGTTAAGGCCGTTGTGGGGGTGGGATATGGATTTATGCAATGCATTAGGTCAGATGAAGTCGTCCCTGAAATTTTGCGAGACATGGTCAAAAATATCGACACAGAAGCATGCAATATCAGGCTGAAGGGTAGGCTTCTGTCTGTAGACGCGGACGAATTTACGCGTGTTATGGGCATTCACAACAGGGGGCATGCCATTGAACTCGGGGGTGACATTAGTCCTGCTGAATATGGAAATGTTGTAGCTCCGATGCTTGGCCCAGCTGGCAATATAGCAGTGGACAATCTGAAGTTCATTGTGCGAGACAGGGAAATTGTTGACGACTATACCCGCAGTATAGGAGCGAAGAATTGGGCAACATTTGCAGTGGACTACTTGATGGAGGGAATAAGAAAGCATCGTCAAGAAGGATCCCCGGTTGTAGCGGGATGTGCACTATATCTGCAGCTGGTATATTGTGACAAAGTTGGTGAGAAGTTATTGCCAAAGGAGCGGCTAGTGGCACCTGTGATGGATTGGAGCCTTGGGGAGATAAATGTGTTGCTGGGTAGGTTAGTAGCAGAAACTAAAACCAAGATAATGGGTGAGACGGGAGACAATTGTAATAAGGGGACTAGTGTGGATGAAGCAGAGGTGAAGGAAACTTGTGTTGCGGAGGTTAGAGAGGAGTGGCGATTCATGCGGATGAACATGCATGATACGGAGCAACGACATGAAGGGGAGGACTATTATAGCTCACATCGCCATGCAGTAGAGCAAGGAATTGAACAGGGGCAAAACATTATTTTAGAAGAAGTACATGGCCATGAAAAGGCGGTTCGGTCGGACACTGGAAGCAGCCCAACGGGAGCACAATGTCGGAAAATAAAAAGCTTCAGGGAAGAAGGCACCATTAAAGACAGAGGTGTGAAGCGAAGTCATGGACGTGCTGTGGGTGAAAACAGAAGTGATAAGTATGACTACATCAAGTATGTAATGGGCTATATGGGAAAGGAAGACGAAACTTCCAATTCGATGGGACGAATGGTTGCCGGGCCGTACAGACTGAAGGTCACATCACCAGATTTCGACGTCGCACTGATAGAATTTGTTTTTTTTGGGGGAAAGGTCCTAACATCAGAAGAAATCAGAACATGGATCGGGGTGTGCGGAGATGGGGCAGAAGTTATTTATAGAGGGGACTTGGTCACCCTAAACCCTTGTGTGTGGGTATCGGGAAGTGTAAGTATTAAAAACTACTATGGTTATGTGCATGAAGAAGGGAACTTAATTGTTATTAATTATAGAGCTACACATAATGAGGATAACACATGGATCGACTGGGTGAACCACACAAGGGAAATATGCAAGTTAGAGAGGTTCGACAGGAAGATTTCAGAGTGCGAGAAGCTACAAGATATTGACCGTGTGATGGCGGTTGAGAACTTAAAGCAAAATGGAGGAGGGAAAACAGTCTCATATTTTGTGGCAGTTGAACCGCATCGTGTACCCAAACAAAGGAATTCATATGACTGTGGGGTGTACGTTATGAAGAACATGCAAAACTATGGAGACGATTGGGCATTTGGGTATGACTCTCACCAAATCCGAGCAGCCATACTACTGGACTGTCTAAAGGCACCAAATAACCAGATGTCAAGAACAATAGAAGATGTCATCAAAGGAAGTTGCTATGGGGTGGAGGATCAACTGACTCAAGTAAGGGGGGAGCAGACCCCTGGTATAGCTCATCCATTTGAAGAATGGGGTTCTGATCAGTTTCACCTATTTGATAAAGCCGAAGATTGGATTGGAGGTGGCGAAAAAGGGGGAACAGAAACCAGAAACTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

630

Amino Acids

70.87

Weight (kDa)

5.44

Isoelectric Point (pI)

32.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1134
AccB1I GGYRCC 3 cut(s) 562, 947, 1678
AccBSI CCGCTC 1 cut(s) 553
AccI GTMKAC 1 cut(s) 204
AccII CGCG 2 cut(s) 209, 223
AclWI GGATC 5 cut(s) 465, 478, 1205, 1382, 1752
AcoI YGGCCR 1 cut(s) 862
AcsI RAATTY 4 cut(s) 129, 215, 1145, 1561
AcuI CTGAAG 4 cut(s) 203, 368, 919, 1127
AcyI GRCGYC 1 cut(s) 1131
AfaI GTAC 4 cut(s) 858, 1100, 1548, 1583
AfiI CCNNNNNNNGG 7 cut(s) 75, 314, 871, 1396, 1471, 1557, 1845
AflIII ACRYGT 1 cut(s) 221
AgsI TTSAA 5 cut(s) 28, 260, 827, 1535, 1799
AhdI GACNNNNNGTC 1 cut(s) 1109
AhlI ACTAGT 1 cut(s) 674
AjiI CACGTC 1 cut(s) 986
AjnI CCWGG 1 cut(s) 1777
AjuI GAANNNNNNNTTGG 2 cut(s) 1833, 1865
AluBI AGCT 8 cut(s) 305, 323, 508, 795, 933, 1349, 1450, 1787
AluI AGCT 8 cut(s) 305, 323, 508, 795, 933, 1349, 1450, 1787
Alw21I GWGCWC 2 cut(s) 496, 913
Alw26I GTCTC 6 cut(s) 132, 357, 641, 648, 1519, 1605
Alw44I GTGCAC 1 cut(s) 492
AlwI GGATC 5 cut(s) 465, 478, 1205, 1382, 1752
AlwNI CAGNNNCTG 1 cut(s) 1887
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 4 cut(s) 66, 316, 862, 1094
ApaLI GTGCAC 1 cut(s) 492
ApeKI GCWGC 3 cut(s) 505, 897, 1652
ApoI RAATTY 4 cut(s) 129, 215, 1145, 1561
AseI ATTAAT 1 cut(s) 1338
AspS9I GGNCC 3 cut(s) 317, 1094, 1168
AsuC2I CCSGG 2 cut(s) 476, 1093
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 1168
BaeGI GKGCMC 1 cut(s) 496
BalI TGGCCA 1 cut(s) 864
BamHI GGATCC 1 cut(s) 470
BanI GGYRCC 3 cut(s) 562, 947, 1678
BbsI GAAGAC 1 cut(s) 1062
Bbv12I GWGCWC 2 cut(s) 496, 913
BbvI GCAGC 3 cut(s) 517, 909, 1664
BccI CCATC 5 cut(s) 433, 565, 1069, 1208, 1465
BceAI ACGGC 2 cut(s) 53, 1081
BciT130I CCWGG 1 cut(s) 1779
BclI TGATCA 1 cut(s) 1813
BcnI CCSGG 2 cut(s) 476, 1093
BcoDI GTCTC 6 cut(s) 132, 357, 641, 648, 1519, 1605
BcuI ACTAGT 1 cut(s) 674
BfaI CTAG 2 cut(s) 557, 675
BfmI CTRYAG 2 cut(s) 201, 503
BglI GCCNNNNNGGC 1 cut(s) 324
BisI GCNGC 4 cut(s) 506, 554, 898, 1653
BlsI GCNGC 4 cut(s) 507, 555, 899, 1654
Bme1390I CCNGG 3 cut(s) 476, 1093, 1779
Bme18I GGWCC 1 cut(s) 1168
BmeRI GACNNNNNGTC 1 cut(s) 1109
BmeT110I CYCGRG 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 986
BmgT120I GGNCC 3 cut(s) 317, 1094, 1168
BmiI GGNNCC 5 cut(s) 472, 564, 581, 949, 1680
BmrFI CCNGG 3 cut(s) 476, 1093, 1779
BmrI ACTGGG 1 cut(s) 1390
BmsI GCATC 4 cut(s) 43, 300, 466, 1549
BmuI ACTGGG 1 cut(s) 1390
BoxI GACNNNNGTC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 1062
BpuEI CTTGAG 1 cut(s) 1740
BpuMI CCSGG 2 cut(s) 476, 1093
BsaHI GRCGYC 1 cut(s) 1131
BsaJI CCNNGG 3 cut(s) 474, 583, 1777
Bsc4I CCNNNNNNNGG 7 cut(s) 75, 314, 871, 1396, 1471, 1557, 1845
Bse1I ACTGG 3 cut(s) 895, 1385, 1668
Bse3DI GCAATG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 1779
BseDI CCNNGG 3 cut(s) 474, 583, 1777
BseGI GGATG 4 cut(s) 494, 688, 750, 1789
BseLI CCNNNNNNNGG 7 cut(s) 75, 314, 871, 1396, 1471, 1557, 1845
BseMI GCAATG 1 cut(s) 104
BseNI ACTGG 3 cut(s) 895, 1385, 1668
BseRI GAGGAG 2 cut(s) 740, 1515
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 3 cut(s) 517, 909, 1664
BseYI CCCAGC 2 cut(s) 319, 604
Bsh1236I CGCG 2 cut(s) 209, 223
Bsh1285I CGRYCG 1 cut(s) 884
BshFI GGCC 4 cut(s) 68, 318, 864, 1096
BshNI GGYRCC 3 cut(s) 562, 947, 1678
BsiEI CGRYCG 1 cut(s) 884
BsiHKAI GWGCWC 2 cut(s) 496, 913
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 2 cut(s) 476, 1092
BslFI GGGAC 4 cut(s) 107, 685, 1092, 1253
BslI CCNNNNNNNGG 7 cut(s) 75, 314, 871, 1396, 1471, 1557, 1845
BsmAI GTCTC 6 cut(s) 132, 357, 641, 648, 1519, 1605
BsmBI CGTCTC 2 cut(s) 641, 1605
BsmFI GGGAC 4 cut(s) 107, 685, 1092, 1253
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 4 cut(s) 68, 318, 864, 1096
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 496, 913
Bsp143I GATC 5 cut(s) 470, 1197, 1374, 1744, 1813
BspANI GGCC 4 cut(s) 68, 318, 864, 1096
BspFNI CGCG 2 cut(s) 209, 223
BspLI GGNNCC 5 cut(s) 472, 564, 581, 949, 1680
BspMAI CTGCAG 1 cut(s) 507
BspPI GGATC 5 cut(s) 465, 478, 1205, 1382, 1752
BspT107I GGYRCC 3 cut(s) 562, 947, 1678
BsrBI CCGCTC 1 cut(s) 553
BsrDI GCAATG 1 cut(s) 104
BsrI ACTGG 3 cut(s) 895, 1385, 1668
BssECI CCNNGG 3 cut(s) 474, 583, 1777
BssMI GATC 5 cut(s) 470, 1197, 1374, 1744, 1813
BssNI GRCGYC 1 cut(s) 1131
BssT1I CCWWGG 1 cut(s) 583
Bst2UI CCWGG 1 cut(s) 1779
Bst4CI ACNGT 6 cut(s) 37, 1466, 1513, 1574, 1670, 1889
BstACI GRCGYC 1 cut(s) 1131
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 3 cut(s) 169, 252, 325
BstDEI CTNAG 1 cut(s) 12
BstEII GGTNACC 1 cut(s) 1246
BstF5I GGATG 4 cut(s) 494, 688, 750, 1789
BstFNI CGCG 2 cut(s) 209, 223
BstKTI GATC 5 cut(s) 473, 1200, 1377, 1747, 1816
BstMAI GTCTC 6 cut(s) 132, 357, 641, 648, 1519, 1605
BstMBI GATC 5 cut(s) 470, 1197, 1374, 1744, 1813
BstMCI CGRYCG 1 cut(s) 884
BstMWI GCNNNNNNNGC 6 cut(s) 324, 422, 491, 550, 739, 801
BstNI CCWGG 1 cut(s) 1779
BstNSI RCATGY 4 cut(s) 171, 254, 754, 1600
BstPAI GACNNNNGTC 1 cut(s) 276
BstPI GGTNACC 1 cut(s) 1246
BstSCI CCNGG 3 cut(s) 474, 1091, 1777
BstSFI CTRYAG 2 cut(s) 201, 503
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 2 cut(s) 209, 223
BstV1I GCAGC 3 cut(s) 517, 909, 1664
BstV2I GAAGAC 1 cut(s) 1062
BstX2I RGATCY 1 cut(s) 470
BstXI CCANNNNNNTGG 3 cut(s) 640, 1075, 1663
BstYI RGATCY 1 cut(s) 470
BsuRI GGCC 4 cut(s) 68, 318, 864, 1096
BtgZI GCGATG 1 cut(s) 785
BtrI CACGTC 1 cut(s) 986
BtsCI GGATG 4 cut(s) 494, 688, 750, 1789
BtsI GCAGTG 2 cut(s) 342, 432
BtsIMutI CAGTG 4 cut(s) 342, 432, 888, 1136
Cac8I GCNNGC 3 cut(s) 169, 252, 325
CaiI CAGNNNCTG 1 cut(s) 1887
Cfr13I GGNCC 3 cut(s) 317, 1094, 1168
CseI GACGC 1 cut(s) 215
Csp6I GTAC 4 cut(s) 857, 1099, 1547, 1582
CviQI GTAC 4 cut(s) 857, 1099, 1547, 1582
DdeI CTNAG 1 cut(s) 12
DpnI GATC 5 cut(s) 472, 1199, 1376, 1746, 1815
DpnII GATC 5 cut(s) 470, 1197, 1374, 1744, 1813
DriI GACNNNNNGTC 1 cut(s) 1109
EaeI YGGCCR 1 cut(s) 862
Eam1105I GACNNNNNGTC 1 cut(s) 1109
Eco130I CCWWGG 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 1168
Eco57I CTGAAG 4 cut(s) 203, 368, 919, 1127
Eco88I CYCGRG 1 cut(s) 263
Eco91I GGTNACC 1 cut(s) 1246
EcoO109I RGGNCCY 1 cut(s) 1168
EcoO65I GGTNACC 1 cut(s) 1246
EcoRI GAATTC 1 cut(s) 1561
EcoRII CCWGG 1 cut(s) 1777
EcoT14I CCWWGG 1 cut(s) 583
EcoT22I ATGCAT 2 cut(s) 104, 756
ErhI CCWWGG 1 cut(s) 583
Esp3I CGTCTC 2 cut(s) 641, 1605
FaqI GGGAC 4 cut(s) 107, 685, 1092, 1253
FauI CCCGC 2 cut(s) 398, 478
FauNDI CATATG 1 cut(s) 1567
FbaI TGATCA 1 cut(s) 1813
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 4 cut(s) 506, 554, 898, 1653
FokI GGATG 4 cut(s) 501, 695, 757, 1776
Fsp4HI GCNGC 4 cut(s) 506, 554, 898, 1653
FspBI CTAG 2 cut(s) 557, 675
GluI GCNGC 4 cut(s) 506, 554, 898, 1653
GsaI CCCAGC 2 cut(s) 323, 608
HaeIII GGCC 4 cut(s) 68, 318, 864, 1096
HapII CCGG 2 cut(s) 476, 1092
HgaI GACGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 1131
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 931
HinfI GANTC 3 cut(s) 735, 1634, 1753
HpaII CCGG 2 cut(s) 476, 1092
Hpy166II GTNNAC 9 cut(s) 40, 205, 340, 379, 430, 494, 1387, 1547, 1582
Hpy188III TCNNGA 3 cut(s) 464, 1275, 1698
Hpy8I GTNNAC 9 cut(s) 40, 205, 340, 379, 430, 494, 1387, 1547, 1582
Hpy99I CGWCG 2 cut(s) 1133, 1136
HpyAV CCTTC 7 cut(s) 178, 461, 691, 770, 938, 1102, 1313
HpyCH4III ACNGT 6 cut(s) 37, 1466, 1513, 1574, 1670, 1889
HpyCH4IV ACGT 3 cut(s) 985, 1131, 1584
HpyF10VI GCNNNNNNNGC 6 cut(s) 324, 422, 491, 550, 739, 801
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 3 cut(s) 985, 1131, 1584
Hsp92I GRCGYC 1 cut(s) 1131
Ksp22I TGATCA 1 cut(s) 1813
Kzo9I GATC 5 cut(s) 470, 1197, 1374, 1744, 1813
LmnI GCTCC 7 cut(s) 310, 401, 550, 579, 763, 908, 1768
Lsp1109I GCAGC 3 cut(s) 517, 909, 1664
LweI GCATC 4 cut(s) 43, 300, 466, 1549
MaeI CTAG 2 cut(s) 557, 675
MaeII ACGT 3 cut(s) 985, 1131, 1584
MaeIII GTNAC 4 cut(s) 269, 518, 1111, 1246
MalI GATC 5 cut(s) 472, 1199, 1376, 1746, 1815
MbiI CCGCTC 1 cut(s) 553
MboI GATC 5 cut(s) 470, 1197, 1374, 1744, 1813
MfeI CAATTG 1 cut(s) 658
MflI RGATCY 1 cut(s) 470
MhlI GDGCHC 2 cut(s) 496, 913
MlsI TGGCCA 1 cut(s) 864
MluI ACGCGT 1 cut(s) 221
MluNI TGGCCA 1 cut(s) 864
MlyI GAGTC 2 cut(s) 1628, 1747
MmeI TCCRAC 2 cut(s) 864, 899
Mox20I TGGCCA 1 cut(s) 864
Mph1103I ATGCAT 2 cut(s) 104, 756
MscI TGGCCA 1 cut(s) 864
MseI TTAA 6 cut(s) 63, 954, 1290, 1328, 1338, 1487
MslI CAYNNNNRTG 4 cut(s) 743, 804, 864, 984
Msp20I TGGCCA 1 cut(s) 864
MspA1I CMGCKG 2 cut(s) 323, 508
MspI CCGG 2 cut(s) 476, 1092
MspR9I CCNGG 3 cut(s) 476, 1093, 1779
MunI CAATTG 1 cut(s) 658
Mva1269I GAATGC 1 cut(s) 234
MvaI CCWGG 1 cut(s) 1779
MvnI CGCG 2 cut(s) 209, 223
MwoI GCNNNNNNNGC 6 cut(s) 324, 422, 491, 550, 739, 801
NciI CCSGG 2 cut(s) 476, 1093
NdeI CATATG 1 cut(s) 1567
NdeII GATC 5 cut(s) 470, 1197, 1374, 1744, 1813
NlaIV GGNNCC 5 cut(s) 472, 564, 581, 949, 1680
NmuCI GTSAC 4 cut(s) 269, 518, 1111, 1246
NsiI ATGCAT 2 cut(s) 104, 756
NspI RCATGY 4 cut(s) 171, 254, 754, 1600
PaeI GCATGC 2 cut(s) 171, 254
PctI GAATGC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 735
PflFI GACNNNGTC 2 cut(s) 143, 1244
PkrI GCNGC 4 cut(s) 507, 555, 899, 1654
PleI GAGTC 2 cut(s) 1628, 1747
PpsI GAGTC 2 cut(s) 1628, 1747
PpuMI RGGWCCY 1 cut(s) 1168
PshAI GACNNNNGTC 1 cut(s) 276
PshBI ATTAAT 1 cut(s) 1338
Psp5II RGGWCCY 1 cut(s) 1168
Psp6I CCWGG 1 cut(s) 1777
PspEI GGTNACC 1 cut(s) 1246
PspFI CCCAGC 2 cut(s) 319, 604
PspGI CCWGG 1 cut(s) 1777
PspN4I GGNNCC 5 cut(s) 472, 564, 581, 949, 1680
PspPI GGNCC 3 cut(s) 317, 1094, 1168
PspPPI RGGWCCY 1 cut(s) 1168
PstI CTGCAG 1 cut(s) 507
PstNI CAGNNNCTG 1 cut(s) 1887
PsuI RGATCY 1 cut(s) 470
PsyI GACNNNGTC 2 cut(s) 143, 1244
PvuII CAGCTG 2 cut(s) 323, 508
RsaI GTAC 4 cut(s) 858, 1100, 1548, 1583
RsaNI GTAC 4 cut(s) 857, 1099, 1547, 1582
RseI CAYNNNNRTG 4 cut(s) 743, 804, 864, 984
SaqAI TTAA 6 cut(s) 63, 954, 1290, 1328, 1338, 1487
SatI GCNGC 4 cut(s) 506, 554, 898, 1653
Sau3AI GATC 5 cut(s) 470, 1197, 1374, 1744, 1813
Sau96I GGNCC 3 cut(s) 317, 1094, 1168
SchI GAGTC 2 cut(s) 1628, 1747
ScrFI CCNGG 3 cut(s) 476, 1093, 1779
SduI GDGCHC 2 cut(s) 496, 913
SfaNI GCATC 4 cut(s) 43, 300, 466, 1549
SfcI CTRYAG 2 cut(s) 201, 503
SinI GGWCC 1 cut(s) 1168
SmiMI CAYNNNNRTG 4 cut(s) 743, 804, 864, 984
SmlI CTYRAG 1 cut(s) 1755
SmoI CTYRAG 1 cut(s) 1755
SpeI ACTAGT 1 cut(s) 674
SphI GCATGC 2 cut(s) 171, 254
SspMI CTAG 2 cut(s) 557, 675
StyD4I CCNGG 3 cut(s) 474, 1091, 1777
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 6 cut(s) 37, 1466, 1513, 1574, 1670, 1889
TaiI ACGT 3 cut(s) 988, 1134, 1587
TaqI TCGA 5 cut(s) 156, 1073, 1128, 1377, 1422
TaqII GACCGA 1 cut(s) 870
TatI WGTACW 1 cut(s) 856
TauI GCSGC 1 cut(s) 556
TfiI GAWTC 1 cut(s) 735
Tru1I TTAA 6 cut(s) 63, 954, 1290, 1328, 1338, 1487
Tru9I TTAA 6 cut(s) 63, 954, 1290, 1328, 1338, 1487
TscAI CASTG 4 cut(s) 342, 432, 895, 1143
TseFI GTSAC 4 cut(s) 269, 518, 1111, 1246
TseI GCWGC 3 cut(s) 505, 897, 1652
Tsp45I GTSAC 4 cut(s) 269, 518, 1111, 1246
TspGWI ACGGA 1 cut(s) 776
TspRI CASTG 4 cut(s) 342, 432, 895, 1143
Tth111I GACNNNGTC 2 cut(s) 143, 1244
VneI GTGCAC 1 cut(s) 492
VpaK11BI GGWCC 1 cut(s) 1168
VspI ATTAAT 1 cut(s) 1338
XapI RAATTY 4 cut(s) 129, 215, 1145, 1561
XceI RCATGY 4 cut(s) 171, 254, 754, 1600
XcmI CCANNNNNNNNNTGG 1 cut(s) 1800
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 2 cut(s) 557, 675
ZraI GACGTC 1 cut(s) 1132
Zsp2I ATGCAT 2 cut(s) 104, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.