protein desumoylation
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Peptidase_C48 | PF02902 | 594 - 706 | 8.5e-14 | Ulp1 protease family, C-terminal catalytic domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 395, 673, 848 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1938 |
| AccII | CGCG | 1 cut(s) | 530 |
| AccIII | TCCGGA | 2 cut(s) | 471, 2047 |
| AciI | CCGC | 6 cut(s) | 6, 99, 362, 377, 1292, 2243 |
| AclI | AACGTT | 1 cut(s) | 448 |
| AcoI | YGGCCR | 1 cut(s) | 301 |
| AcsI | RAATTY | 2 cut(s) | 641, 761 |
| AcuI | CTGAAG | 3 cut(s) | 980, 1079, 1914 |
| AcvI | CACGTG | 1 cut(s) | 1409 |
| AcyI | GRCGYC | 1 cut(s) | 462 |
| AdeI | CACNNNGTG | 1 cut(s) | 256 |
| AfaI | GTAC | 3 cut(s) | 1041, 1194, 2058 |
| AgsI | TTSAA | 5 cut(s) | 811, 1211, 1789, 2260, 2303 |
| AjnI | CCWGG | 3 cut(s) | 1254, 1324, 1513 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 54, 86 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 829, 861 |
| AluBI | AGCT | 8 cut(s) | 350, 994, 1045, 1181, 1314, 1701, 2145, 2342 |
| AluI | AGCT | 8 cut(s) | 350, 994, 1045, 1181, 1314, 1701, 2145, 2342 |
| Alw21I | GWGCWC | 4 cut(s) | 1316, 1333, 1758, 2015 |
| Alw26I | GTCTC | 3 cut(s) | 977, 1473, 2186 |
| Alw44I | GTGCAC | 1 cut(s) | 1329 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 155 |
| Ama87I | CYCGRG | 1 cut(s) | 515 |
| Aor13HI | TCCGGA | 2 cut(s) | 471, 2047 |
| AoxI | GGCC | 6 cut(s) | 206, 301, 591, 1257, 1678, 2139 |
| ApaI | GGGCCC | 1 cut(s) | 1682 |
| ApaLI | GTGCAC | 1 cut(s) | 1329 |
| ApoI | RAATTY | 2 cut(s) | 641, 761 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 869, 901 |
| AspLEI | GCGC | 3 cut(s) | 1172, 1435, 1965 |
| AspS9I | GGNCC | 8 cut(s) | 207, 247, 591, 1517, 1678, 1679, 2121, 2139 |
| AsuC2I | CCSGG | 4 cut(s) | 516, 517, 977, 1145 |
| AsuHPI | GGTGA | 7 cut(s) | 94, 123, 637, 1093, 1306, 1376, 2339 |
| AsuII | TTCGAA | 2 cut(s) | 848, 1704 |
| AvaI | CYCGRG | 1 cut(s) | 515 |
| AvaII | GGWCC | 3 cut(s) | 247, 1517, 2121 |
| AxyI | CCTNAGG | 1 cut(s) | 242 |
| BaeGI | GKGCMC | 5 cut(s) | 515, 1333, 1414, 1682, 2389 |
| BanII | GRGCYC | 3 cut(s) | 818, 1316, 1682 |
| BbrPI | CACGTG | 1 cut(s) | 1409 |
| BbsI | GAAGAC | 1 cut(s) | 1901 |
| Bbv12I | GWGCWC | 4 cut(s) | 1316, 1333, 1758, 2015 |
| BceAI | ACGGC | 2 cut(s) | 288, 1286 |
| BciT130I | CCWGG | 3 cut(s) | 1256, 1326, 1515 |
| BclI | TGATCA | 3 cut(s) | 789, 1563, 2329 |
| BcnI | CCSGG | 4 cut(s) | 516, 517, 977, 1145 |
| BcoDI | GTCTC | 3 cut(s) | 977, 1473, 2186 |
| BfaI | CTAG | 3 cut(s) | 503, 893, 2283 |
| BfmI | CTRYAG | 5 cut(s) | 147, 354, 680, 2363, 2390 |
| BfuAI | ACCTGC | 3 cut(s) | 395, 673, 848 |
| BglII | AGATCT | 1 cut(s) | 124 |
| BmcAI | AGTACT | 1 cut(s) | 1194 |
| Bme1390I | CCNGG | 7 cut(s) | 516, 517, 977, 1145, 1256, 1326, 1515 |
| Bme18I | GGWCC | 3 cut(s) | 247, 1517, 2121 |
| BmeT110I | CYCGRG | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 8 cut(s) | 207, 247, 591, 1517, 1678, 1679, 2121, 2139 |
| BmiI | GGNNCC | 3 cut(s) | 248, 1680, 2140 |
| BmrFI | CCNGG | 7 cut(s) | 516, 517, 977, 1145, 1256, 1326, 1515 |
| BmrI | ACTGGG | 2 cut(s) | 506, 598 |
| BmsI | GCATC | 7 cut(s) | 349, 1111, 1189, 1403, 1634, 1825, 2100 |
| BmuI | ACTGGG | 2 cut(s) | 506, 598 |
| BpiI | GAAGAC | 1 cut(s) | 1901 |
| BpmI | CTGGAG | 1 cut(s) | 1235 |
| Bpu14I | TTCGAA | 2 cut(s) | 848, 1704 |
| BpuEI | CTTGAG | 2 cut(s) | 1300, 1909 |
| BpuMI | CCSGG | 4 cut(s) | 516, 517, 977, 1145 |
| Bsa29I | ATCGAT | 1 cut(s) | 726 |
| BsaAI | YACGTR | 1 cut(s) | 1409 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1554 |
| BsaHI | GRCGYC | 1 cut(s) | 462 |
| BsaJI | CCNNGG | 3 cut(s) | 514, 515, 1324 |
| BsaWI | WCCGGW | 5 cut(s) | 133, 471, 1271, 1447, 2047 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 654, 684, 750, 780, 829, 859 |
| Bse1I | ACTGG | 7 cut(s) | 57, 501, 561, 567, 593, 1200, 1218 |
| Bse21I | CCTNAGG | 1 cut(s) | 242 |
| Bse3DI | GCAATG | 3 cut(s) | 1598, 1944, 1975 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1554 |
| BseAI | TCCGGA | 2 cut(s) | 471, 2047 |
| BseBI | CCWGG | 3 cut(s) | 1256, 1326, 1515 |
| BseCI | ATCGAT | 1 cut(s) | 726 |
| BseDI | CCNNGG | 3 cut(s) | 514, 515, 1324 |
| BseGI | GGATG | 9 cut(s) | 222, 880, 985, 1126, 1204, 1552, 1821, 2155, 2294 |
| BseJI | GATNNNNATC | 1 cut(s) | 1554 |
| BseMI | GCAATG | 3 cut(s) | 1598, 1944, 1975 |
| BseMII | CTCAG | 6 cut(s) | 93, 256, 760, 1065, 1722, 2010 |
| BseNI | ACTGG | 7 cut(s) | 57, 501, 561, 567, 593, 1200, 1218 |
| BseRI | GAGGAG | 3 cut(s) | 308, 446, 2261 |
| BseSI | GKGCMC | 5 cut(s) | 515, 1333, 1414, 1682, 2389 |
| BseX3I | CGGCCG | 1 cut(s) | 301 |
| BsgI | GTGCAG | 2 cut(s) | 423, 988 |
| Bsh1236I | CGCG | 1 cut(s) | 530 |
| Bsh1285I | CGRYCG | 2 cut(s) | 271, 304 |
| BshFI | GGCC | 6 cut(s) | 208, 303, 593, 1259, 1680, 2141 |
| BshVI | ATCGAT | 1 cut(s) | 726 |
| BsiEI | CGRYCG | 2 cut(s) | 271, 304 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1316, 1333, 1758, 2015 |
| BsiHKCI | CYCGRG | 1 cut(s) | 515 |
| BsiSI | CCGG | 9 cut(s) | 134, 472, 516, 976, 1001, 1145, 1272, 1448, 2048 |
| BslFI | GGGAC | 6 cut(s) | 89, 260, 532, 1127, 1916, 1955 |
| BsmAI | GTCTC | 3 cut(s) | 977, 1473, 2186 |
| BsmBI | CGTCTC | 1 cut(s) | 1473 |
| BsmFI | GGGAC | 6 cut(s) | 89, 260, 532, 1127, 1916, 1955 |
| BsmI | GAATGC | 1 cut(s) | 88 |
| BsnI | GGCC | 6 cut(s) | 208, 303, 593, 1259, 1680, 2141 |
| BsoBI | CYCGRG | 1 cut(s) | 515 |
| Bsp119I | TTCGAA | 2 cut(s) | 848, 1704 |
| Bsp120I | GGGCCC | 1 cut(s) | 1678 |
| Bsp1286I | GDGCHC | 9 cut(s) | 515, 818, 1316, 1333, 1414, 1682, 1758, 2015, 2389 |
| Bsp13I | TCCGGA | 2 cut(s) | 471, 2047 |
| Bsp143I | GATC | 7 cut(s) | 124, 268, 789, 1563, 2067, 2152, 2329 |
| BspACI | CCGC | 6 cut(s) | 6, 99, 362, 377, 1292, 2243 |
| BspANI | GGCC | 6 cut(s) | 208, 303, 593, 1259, 1680, 2141 |
| BspCNI | CTCAG | 6 cut(s) | 94, 255, 759, 1066, 1723, 2011 |
| BspDI | ATCGAT | 1 cut(s) | 726 |
| BspEI | TCCGGA | 2 cut(s) | 471, 2047 |
| BspFNI | CGCG | 1 cut(s) | 530 |
| BspHI | TCATGA | 1 cut(s) | 913 |
| BspLI | GGNNCC | 3 cut(s) | 248, 1680, 2140 |
| BspMAI | CTGCAG | 3 cut(s) | 151, 358, 684 |
| BspMI | ACCTGC | 3 cut(s) | 395, 673, 848 |
| BspT104I | TTCGAA | 2 cut(s) | 848, 1704 |
| BsrDI | GCAATG | 3 cut(s) | 1598, 1944, 1975 |
| BsrI | ACTGG | 7 cut(s) | 57, 501, 561, 567, 593, 1200, 1218 |
| BssECI | CCNNGG | 3 cut(s) | 514, 515, 1324 |
| BssMI | GATC | 7 cut(s) | 124, 268, 789, 1563, 2067, 2152, 2329 |
| BssNI | GRCGYC | 1 cut(s) | 462 |
| Bst2UI | CCWGG | 3 cut(s) | 1256, 1326, 1515 |
| Bst6I | CTCTTC | 1 cut(s) | 615 |
| BstACI | GRCGYC | 1 cut(s) | 462 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2240 |
| BstBAI | YACGTR | 1 cut(s) | 1409 |
| BstBI | TTCGAA | 2 cut(s) | 848, 1704 |
| BstC8I | GCNNGC | 3 cut(s) | 492, 1312, 2143 |
| BstDEI | CTNAG | 8 cut(s) | 102, 242, 746, 899, 1074, 1731, 2019, 2219 |
| BstEII | GGTNACC | 1 cut(s) | 1267 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1061 |
| BstF5I | GGATG | 9 cut(s) | 222, 880, 985, 1126, 1204, 1552, 1821, 2155, 2294 |
| BstFNI | CGCG | 1 cut(s) | 530 |
| BstHHI | GCGC | 3 cut(s) | 1172, 1435, 1965 |
| BstKTI | GATC | 7 cut(s) | 127, 271, 792, 1566, 2070, 2155, 2332 |
| BstMAI | GTCTC | 3 cut(s) | 977, 1473, 2186 |
| BstMBI | GATC | 7 cut(s) | 124, 268, 789, 1563, 2067, 2152, 2329 |
| BstMCI | CGRYCG | 2 cut(s) | 271, 304 |
| BstNI | CCWGG | 3 cut(s) | 1256, 1326, 1515 |
| BstNSI | RCATGY | 1 cut(s) | 1406 |
| BstPI | GGTNACC | 1 cut(s) | 1267 |
| BstSCI | CCNGG | 7 cut(s) | 514, 515, 975, 1143, 1254, 1324, 1513 |
| BstSFI | CTRYAG | 5 cut(s) | 147, 354, 680, 2363, 2390 |
| BstSLI | GKGCMC | 5 cut(s) | 515, 1333, 1414, 1682, 2389 |
| BstUI | CGCG | 1 cut(s) | 530 |
| BstV2I | GAAGAC | 1 cut(s) | 1901 |
| BstX2I | RGATCY | 1 cut(s) | 124 |
| BstYI | RGATCY | 1 cut(s) | 124 |
| BstZI | CGGCCG | 1 cut(s) | 301 |
| Bsu15I | ATCGAT | 1 cut(s) | 726 |
| Bsu36I | CCTNAGG | 1 cut(s) | 242 |
| BsuRI | GGCC | 6 cut(s) | 208, 303, 593, 1259, 1680, 2141 |
| BsuTUI | ATCGAT | 1 cut(s) | 726 |
| BtsCI | GGATG | 9 cut(s) | 222, 880, 985, 1126, 1204, 1552, 1821, 2155, 2294 |
| BtsI | GCAGTG | 1 cut(s) | 156 |
| BveI | ACCTGC | 3 cut(s) | 395, 673, 848 |
| Cac8I | GCNNGC | 3 cut(s) | 492, 1312, 2143 |
| CaiI | CAGNNNCTG | 1 cut(s) | 155 |
| CciI | TCATGA | 1 cut(s) | 913 |
| CfoI | GCGC | 3 cut(s) | 1172, 1435, 1965 |
| Cfr13I | GGNCC | 8 cut(s) | 207, 247, 591, 1517, 1678, 1679, 2121, 2139 |
| Cfr9I | CCCGGG | 1 cut(s) | 515 |
| ClaI | ATCGAT | 1 cut(s) | 726 |
| CseI | GACGC | 3 cut(s) | 94, 470, 536 |
| Csp6I | GTAC | 3 cut(s) | 1040, 1193, 2057 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2005, 2040 |
| CviAII | CATG | 8 cut(s) | 544, 753, 787, 914, 1006, 1403, 1671, 1832 |
| CviQI | GTAC | 3 cut(s) | 1040, 1193, 2057 |
| DdeI | CTNAG | 8 cut(s) | 102, 242, 746, 899, 1074, 1731, 2019, 2219 |
| DpnI | GATC | 7 cut(s) | 126, 270, 791, 1565, 2069, 2154, 2331 |
| DpnII | GATC | 7 cut(s) | 124, 268, 789, 1563, 2067, 2152, 2329 |
| DraIII | CACNNNGTG | 1 cut(s) | 256 |
| EaeI | YGGCCR | 1 cut(s) | 301 |
| EagI | CGGCCG | 1 cut(s) | 301 |
| Eam1104I | CTCTTC | 1 cut(s) | 615 |
| EarI | CTCTTC | 1 cut(s) | 615 |
| Ecl136II | GAGCTC | 1 cut(s) | 1314 |
| EclXI | CGGCCG | 1 cut(s) | 301 |
| Eco24I | GRGCYC | 3 cut(s) | 818, 1316, 1682 |
| Eco32I | GATATC | 1 cut(s) | 1229 |
| Eco47I | GGWCC | 3 cut(s) | 247, 1517, 2121 |
| Eco52I | CGGCCG | 1 cut(s) | 301 |
| Eco53kI | GAGCTC | 1 cut(s) | 1314 |
| Eco57I | CTGAAG | 3 cut(s) | 980, 1079, 1914 |
| Eco72I | CACGTG | 1 cut(s) | 1409 |
| Eco81I | CCTNAGG | 1 cut(s) | 242 |
| Eco88I | CYCGRG | 1 cut(s) | 515 |
| Eco91I | GGTNACC | 1 cut(s) | 1267 |
| EcoICRI | GAGCTC | 1 cut(s) | 1314 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1061 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1517 |
| EcoO65I | GGTNACC | 1 cut(s) | 1267 |
| EcoRII | CCWGG | 3 cut(s) | 1254, 1324, 1513 |
| EcoRV | GATATC | 1 cut(s) | 1229 |
| EcoT22I | ATGCAT | 1 cut(s) | 1833 |
| EcoT38I | GRGCYC | 3 cut(s) | 818, 1316, 1682 |
| Esp3I | CGTCTC | 1 cut(s) | 1473 |
| FaeI | CATG | 8 cut(s) | 547, 756, 790, 917, 1009, 1406, 1674, 1835 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 947, 979 |
| FaqI | GGGAC | 6 cut(s) | 89, 260, 532, 1127, 1916, 1955 |
| FatI | CATG | 8 cut(s) | 543, 752, 786, 913, 1005, 1402, 1670, 1831 |
| FauI | CCCGC | 1 cut(s) | 106 |
| FauNDI | CATATG | 1 cut(s) | 799 |
| FbaI | TGATCA | 3 cut(s) | 789, 1563, 2329 |
| FokI | GGATG | 9 cut(s) | 229, 887, 992, 1133, 1211, 1559, 1828, 2162, 2301 |
| FriOI | GRGCYC | 3 cut(s) | 818, 1316, 1682 |
| FspBI | CTAG | 3 cut(s) | 503, 893, 2283 |
| GlaI | GCGC | 3 cut(s) | 1171, 1434, 1964 |
| GsuI | CTGGAG | 1 cut(s) | 1235 |
| HaeIII | GGCC | 6 cut(s) | 208, 303, 593, 1259, 1680, 2141 |
| HapII | CCGG | 9 cut(s) | 134, 472, 516, 976, 1001, 1145, 1272, 1448, 2048 |
| HgaI | GACGC | 3 cut(s) | 94, 470, 536 |
| HhaI | GCGC | 3 cut(s) | 1172, 1435, 1965 |
| Hin1I | GRCGYC | 1 cut(s) | 462 |
| Hin1II | CATG | 8 cut(s) | 547, 756, 790, 917, 1009, 1406, 1674, 1835 |
| Hin6I | GCGC | 3 cut(s) | 1170, 1433, 1963 |
| HinP1I | GCGC | 3 cut(s) | 1170, 1433, 1963 |
| HincII | GTYRAC | 2 cut(s) | 460, 1495 |
| HindII | GTYRAC | 2 cut(s) | 460, 1495 |
| HindIII | AAGCTT | 2 cut(s) | 992, 1699 |
| HinfI | GANTC | 7 cut(s) | 15, 172, 412, 631, 1153, 1485, 1534 |
| HpaII | CCGG | 9 cut(s) | 134, 472, 516, 976, 1001, 1145, 1272, 1448, 2048 |
| HphI | GGTGA | 7 cut(s) | 94, 123, 637, 1093, 1306, 1376, 2339 |
| Hpy166II | GTNNAC | 7 cut(s) | 62, 460, 526, 1152, 1331, 1468, 1495 |
| Hpy188III | TCNNGA | 7 cut(s) | 266, 472, 811, 914, 1742, 1970, 2048 |
| Hpy8I | GTNNAC | 7 cut(s) | 62, 460, 526, 1152, 1331, 1468, 1495 |
| Hpy99I | CGWCG | 1 cut(s) | 932 |
| HpyAV | CCTTC | 8 cut(s) | 490, 1054, 1072, 1282, 1601, 1737, 1787, 2288 |
| HpyCH4IV | ACGT | 4 cut(s) | 448, 930, 1408, 2271 |
| HpyF3I | CTNAG | 8 cut(s) | 102, 242, 746, 899, 1074, 1731, 2019, 2219 |
| HpySE526I | ACGT | 4 cut(s) | 448, 930, 1408, 2271 |
| Hsp92I | GRCGYC | 1 cut(s) | 462 |
| Hsp92II | CATG | 8 cut(s) | 547, 756, 790, 917, 1009, 1406, 1674, 1835 |
| HspAI | GCGC | 3 cut(s) | 1170, 1433, 1963 |
| Kpn2I | TCCGGA | 2 cut(s) | 471, 2047 |
| Ksp22I | TGATCA | 3 cut(s) | 789, 1563, 2329 |
| Kzo9I | GATC | 7 cut(s) | 124, 268, 789, 1563, 2067, 2152, 2329 |
| LmnI | GCTCC | 3 cut(s) | 347, 1178, 1753 |
| LweI | GCATC | 7 cut(s) | 349, 1111, 1189, 1403, 1634, 1825, 2100 |
| MaeI | CTAG | 3 cut(s) | 503, 893, 2283 |
| MaeII | ACGT | 4 cut(s) | 448, 930, 1408, 2271 |
| MaeIII | GTNAC | 5 cut(s) | 82, 129, 1015, 1267, 1951 |
| MalI | GATC | 7 cut(s) | 126, 270, 791, 1565, 2069, 2154, 2331 |
| MboI | GATC | 7 cut(s) | 124, 268, 789, 1563, 2067, 2152, 2329 |
| MfeI | CAATTG | 2 cut(s) | 819, 2125 |
| MflI | RGATCY | 1 cut(s) | 124 |
| MhlI | GDGCHC | 9 cut(s) | 515, 818, 1316, 1333, 1414, 1682, 1758, 2015, 2389 |
| MlyI | GAGTC | 3 cut(s) | 9, 181, 1147 |
| MmeI | TCCRAC | 7 cut(s) | 117, 159, 594, 640, 967, 1468, 2316 |
| Mph1103I | ATGCAT | 1 cut(s) | 1833 |
| MroI | TCCGGA | 2 cut(s) | 471, 2047 |
| MseI | TTAA | 2 cut(s) | 954, 2213 |
| MslI | CAYNNNNRTG | 2 cut(s) | 542, 1407 |
| MspA1I | CMGCKG | 2 cut(s) | 101, 1045 |
| MspI | CCGG | 9 cut(s) | 134, 472, 516, 976, 1001, 1145, 1272, 1448, 2048 |
| MspR9I | CCNGG | 7 cut(s) | 516, 517, 977, 1145, 1256, 1326, 1515 |
| MunI | CAATTG | 2 cut(s) | 819, 2125 |
| Mva1269I | GAATGC | 1 cut(s) | 88 |
| MvaI | CCWGG | 3 cut(s) | 1256, 1326, 1515 |
| MvnI | CGCG | 1 cut(s) | 530 |
| NciI | CCSGG | 4 cut(s) | 516, 517, 977, 1145 |
| NdeI | CATATG | 1 cut(s) | 799 |
| NdeII | GATC | 7 cut(s) | 124, 268, 789, 1563, 2067, 2152, 2329 |
| NlaIII | CATG | 8 cut(s) | 547, 756, 790, 917, 1009, 1406, 1674, 1835 |
| NlaIV | GGNNCC | 3 cut(s) | 248, 1680, 2140 |
| NmuCI | GTSAC | 2 cut(s) | 82, 129 |
| NsiI | ATGCAT | 1 cut(s) | 1833 |
| NspI | RCATGY | 1 cut(s) | 1406 |
| NspV | TTCGAA | 2 cut(s) | 848, 1704 |
| PagI | TCATGA | 1 cut(s) | 913 |
| PctI | GAATGC | 1 cut(s) | 88 |
| PfeI | GAWTC | 4 cut(s) | 412, 631, 1485, 1534 |
| PflFI | GACNNNGTC | 2 cut(s) | 701, 2270 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1938 |
| PfoI | TCCNGGA | 1 cut(s) | 975 |
| Ple19I | CGATCG | 1 cut(s) | 271 |
| PleI | GAGTC | 3 cut(s) | 9, 180, 1147 |
| PmaCI | CACGTG | 1 cut(s) | 1409 |
| PmlI | CACGTG | 1 cut(s) | 1409 |
| PpsI | GAGTC | 3 cut(s) | 9, 180, 1147 |
| Ppu21I | YACGTR | 1 cut(s) | 1409 |
| PpuMI | RGGWCCY | 1 cut(s) | 1517 |
| Psp124BI | GAGCTC | 1 cut(s) | 1316 |
| Psp1406I | AACGTT | 1 cut(s) | 448 |
| Psp5II | RGGWCCY | 1 cut(s) | 1517 |
| Psp6I | CCWGG | 3 cut(s) | 1254, 1324, 1513 |
| PspCI | CACGTG | 1 cut(s) | 1409 |
| PspEI | GGTNACC | 1 cut(s) | 1267 |
| PspGI | CCWGG | 3 cut(s) | 1254, 1324, 1513 |
| PspN4I | GGNNCC | 3 cut(s) | 248, 1680, 2140 |
| PspOMI | GGGCCC | 1 cut(s) | 1678 |
| PspPI | GGNCC | 8 cut(s) | 207, 247, 591, 1517, 1678, 1679, 2121, 2139 |
| PspPPI | RGGWCCY | 1 cut(s) | 1517 |
| PstI | CTGCAG | 3 cut(s) | 151, 358, 684 |
| PstNI | CAGNNNCTG | 1 cut(s) | 155 |
| PsuI | RGATCY | 1 cut(s) | 124 |
| PsyI | GACNNNGTC | 2 cut(s) | 701, 2270 |
| PvuI | CGATCG | 1 cut(s) | 271 |
| PvuII | CAGCTG | 1 cut(s) | 1045 |
| RsaI | GTAC | 3 cut(s) | 1041, 1194, 2058 |
| RsaNI | GTAC | 3 cut(s) | 1040, 1193, 2057 |
| RseI | CAYNNNNRTG | 2 cut(s) | 542, 1407 |
| SacI | GAGCTC | 1 cut(s) | 1316 |
| SaqAI | TTAA | 2 cut(s) | 954, 2213 |
| Sau3AI | GATC | 7 cut(s) | 124, 268, 789, 1563, 2067, 2152, 2329 |
| Sau96I | GGNCC | 8 cut(s) | 207, 247, 591, 1517, 1678, 1679, 2121, 2139 |
| ScaI | AGTACT | 1 cut(s) | 1194 |
| SchI | GAGTC | 3 cut(s) | 9, 181, 1147 |
| ScrFI | CCNGG | 7 cut(s) | 516, 517, 977, 1145, 1256, 1326, 1515 |
| SduI | GDGCHC | 9 cut(s) | 515, 818, 1316, 1333, 1414, 1682, 1758, 2015, 2389 |
| SfaNI | GCATC | 7 cut(s) | 349, 1111, 1189, 1403, 1634, 1825, 2100 |
| SfcI | CTRYAG | 5 cut(s) | 147, 354, 680, 2363, 2390 |
| SfuI | TTCGAA | 2 cut(s) | 848, 1704 |
| SinI | GGWCC | 3 cut(s) | 247, 1517, 2121 |
| SmaI | CCCGGG | 1 cut(s) | 517 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 542, 1407 |
| SmlI | CTYRAG | 2 cut(s) | 1315, 1924 |
| SmoI | CTYRAG | 2 cut(s) | 1315, 1924 |
| SsiI | CCGC | 6 cut(s) | 6, 99, 362, 377, 1292, 2243 |
| SspMI | CTAG | 3 cut(s) | 503, 893, 2283 |
| SstI | GAGCTC | 1 cut(s) | 1316 |
| StyD4I | CCNGG | 7 cut(s) | 514, 515, 975, 1143, 1254, 1324, 1513 |
| TaiI | ACGT | 4 cut(s) | 451, 933, 1411, 2274 |
| TaqI | TCGA | 9 cut(s) | 237, 384, 696, 726, 848, 927, 1243, 1704, 2034 |
| TaqII | GACCGA | 1 cut(s) | 2148 |
| TatI | WGTACW | 2 cut(s) | 1039, 1192 |
| TauI | GCSGC | 1 cut(s) | 365 |
| TfiI | GAWTC | 4 cut(s) | 412, 631, 1485, 1534 |
| Tru1I | TTAA | 2 cut(s) | 954, 2213 |
| Tru9I | TTAA | 2 cut(s) | 954, 2213 |
| TseFI | GTSAC | 2 cut(s) | 82, 129 |
| Tsp45I | GTSAC | 2 cut(s) | 82, 129 |
| TspDTI | ATGAA | 4 cut(s) | 644, 902, 1368, 1677 |
| TspGWI | ACGGA | 1 cut(s) | 1497 |
| TspMI | CCCGGG | 1 cut(s) | 515 |
| Tth111I | GACNNNGTC | 2 cut(s) | 701, 2270 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1938 |
| VneI | GTGCAC | 1 cut(s) | 1329 |
| VpaK11BI | GGWCC | 3 cut(s) | 247, 1517, 2121 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1061 |
| XapI | RAATTY | 2 cut(s) | 641, 761 |
| XceI | RCATGY | 1 cut(s) | 1406 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 750 |
| XmaI | CCCGGG | 1 cut(s) | 515 |
| XspI | CTAG | 3 cut(s) | 503, 893, 2283 |
| ZrmI | AGTACT | 1 cut(s) | 1194 |
| Zsp2I | ATGCAT | 1 cut(s) | 1833 |