Rh3BG122600

protein desumoylation

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
10052169 .. 10056116
3948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG122600.1

Sequence Viewer

Length: 2565 bp
ATGTCAAAGGGTGATACAGTGTTTAATGAAATTGCAGGTTCGAGCGGAGAAGATGGTGGACGATGGGTGGCAGCCAGACGTAAGCTGGACATGGGTAGAGGAAGACATGATAGTGCGTTACAGCCATGTGGGAACATTTCGTATGATGCTGGAAAAAAAATACAAACACTGACACTTTCAAAAATTGCCGAGTTCAAGGAGACGGTCAAGCACCTTTCAGATGCGAAAGTGAAGGCCGTGGTGGAGGTGGGGTTTGGATTTATGCAATGCATAAGGGGGAACGATGTGGTTCCGCAAATATTTGAGGAAATGGTTAACAGGATTGACACGGAAGCATGCACGATAAGTTTGAAGGGTACGGTTGTGTCATTAGACGCGGACGAATTTACACGTGTAATGGGCATTCACAACGGGGGGTCTGCCATAGAGCTGGGGGGTGACATAAGTGCAGCTGAATATGGCAATGTGGTAGGTCCGATGCTTGGGGATGCTGGGTATATTGCAGTGGAGAAATTGCGGTTCATTGTGCGTGATAGGGAAATTGTGGACGATACTTTCATTATAGCGTACGTAATGTTGGCACTGGCGACTGTGATATGTCCTGGAACAAGTAATGGTGTACAAACTGGGATGTTGTTGCCTTTAATAGAGACGACGGGTATAGTACGCAAGAATTGGGCAAATTTCGCCGTGGACTACTTGATGCAGGGAATAAGAAATCACCGACAAGACGGAAGCCCGGTTGTGGCGGGATGTGCACTTTATCTGCAACTGGTATATTGCGACAAAGTTGGTGAGAAGTTACTTCCGAAAGAGCGGCTGGTTGCACCGGTAATGGATTGGAGTCTTGGAGAGATAAATGAGTTGCTAGGAAGGTTAGTGGCGGACACAAAAAACCAGAAACAGCCGGACACAGCCAACAACTACAATAAGGGGAATAGCCTAGAGACGGCGGTGAAGGACGAGGAGTCCGTAGGGTTCCCATTAAGAAAATCAGTACATGAAGACATGTATGATGTTATGTTGGACATGGGGAGGTTGAAAGATGATATGGCATACGTTATGGAAATTGTAACCGCAATACCCACCAGAGTAACAGAGCTGACAAATGGGCTGTTGGTTTTGGCCGAATCCTTAATAAATGTGAAGGCAGACTGTGTGGCTGAGGTGAGAGAGGAGTTGGGATTCATGGGGATGACCAGGCTTAAGAGGGACAAATGGGAAAATGCGGACAACATTGAGATGGCCAAGGGGGCTGGAGTGGAGAAAGGAAATGAGGGGCAGAAGAACGAAGGGTGCAAGGGAGGTGAACATATTGCAAATGAACAGGGTGACAACCTCATGGTCCAACCACTGCATGGAAAAGGAAAGGCATTTGGGTCAGACAGTGGCAGGAGGTCAATAGGAGTACATTGTCCGGAATTGAAAATGTTTGGGGAAGAAGGCAGAGGCAAAGCCAGGGGTGTGAAGCGAACTCATTCACCTGCTGTTTGTGAGCAGACAAGTGATAAATATGACTACATCAAATACGTAATGGGGTATACGGGAATGGATGACGCAAAATCTGGGTGCAGTGGAGGAATGGTTGCCGGTCCATATAGATTGAAGCTCCCAATAGCAGATTTGGACGTCGCAATGATTGAGTTTGTGTTTTTAGACGGAAAGGTCCTGACAGTAGAAGAAATAAGAACATGGCTGGGGGTGTGCGGAGAGGGCGCGGAAGTTGTTTACAGAGGGGACTTGGTAACACTATACCCTTGTGTTTGGGTTTCTGGAAGTTACCGCGCAACTCATAATGAGGATCACTCACTGGGCGACTGGGTGGAGCACACAAGGGAAGTATGCAAGTTGGATAGGTTCAACGGTACGATGCATCTGTGCGAGAAGATTTTTTTGCCCGTCTATGAAGGGGAACATAACAATGGCCATTGGTATCTCATTGTGGTGGACATGGTGAAAAGGATAGCAGAATTGTGGGACAGTGGAGGAGGAAAGCGCCTTAATGCTGGTCGACTATTAGTTATTTCCCAAGTGCTACAACACATTGACCGTGTCATGATGGTTGAGAACTTAAAGCAAAGCGGGAGAGGAAAAACGGTATCTTACTTTGTTGCAGTTGAACCGCCTCGTGTCCCCAAACAAAGGAATTCATACGACTGTGGGGTGTACGTTATGAAGAACATGCAGGACTATCGGCTGGATTGGGCAAATGGGTATGACTCTCACCAAATGCGTGCATCCATAATACTGGACTGTCTTAAAGCACCGAACAACGACATGGCAAGAGCAATAGAAGATGCCATACAAGGGAGCTACATAGCTGGGGAAGGGAGCAACTTAGCTGGGGAAGCTGGAATGAAGCAAGTAACGGTGGAGCAGACCCCAGCAATACCTCATCCTTTTGAAGAATGGGGGTCTGACGAGTTTCAGCTATTTGATAGTGCGGCAGATTGGATTGGAGATGGCCTTAATTGGGGGAACAAAGACCCAAAAATTATGAAAATGTCAGAGAAGGAGGGTGGGAAAGAAGAAAGTATGGGTTACGGGGTTGAGAATGCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

854

Amino Acids

94.12

Weight (kDa)

5.3

Isoelectric Point (pI)

29.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 623 - 729 8.3e-12 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1492
AasI GACNNNNNNGTC 1 cut(s) 1664
AatII GACGTC 1 cut(s) 1632
Acc36I ACCTGC 2 cut(s) 26, 1492
AccB7I CCANNNNNTGG 1 cut(s) 1358
AccBSI CCGCTC 2 cut(s) 45, 817
AccI GTMKAC 2 cut(s) 1541, 2011
AccII CGCG 3 cut(s) 377, 1718, 1785
AccIII TCCGGA 1 cut(s) 1417
AclWI GGATC 1 cut(s) 1809
AcoI YGGCCR 3 cut(s) 1125, 1245, 1924
AcsI RAATTY 3 cut(s) 383, 682, 2146
AcvI CACGTG 1 cut(s) 392
AcyI GRCGYC 1 cut(s) 1629
AfaI GTAC 8 cut(s) 358, 569, 621, 666, 999, 1410, 1867, 2168
AfiI CCNNNNNNNGG 7 cut(s) 482, 745, 949, 1358, 2142, 2307, 2473
AflII CTTAAG 1 cut(s) 1205
AflIII ACRYGT 3 cut(s) 389, 391, 1008
AgeI ACCGGT 1 cut(s) 829
AgsI TTSAA 9 cut(s) 180, 196, 352, 1042, 1426, 1606, 1861, 2120, 2405
AhdI GACNNNNNGTC 1 cut(s) 967
AjnI CCWGG 3 cut(s) 601, 1199, 1457
Alw21I GWGCWC 2 cut(s) 760, 1830
Alw26I GTCTC 3 cut(s) 194, 644, 941
Alw44I GTGCAC 1 cut(s) 756
AlwI GGATC 1 cut(s) 1809
Aor13HI TCCGGA 1 cut(s) 1417
AoxI GGCC 5 cut(s) 234, 1125, 1245, 1924, 2464
ApaLI GTGCAC 1 cut(s) 756
ApeKI GCWGC 2 cut(s) 71, 449
ApoI RAATTY 3 cut(s) 383, 682, 2146
AsiGI ACCGGT 1 cut(s) 829
Asp700I GAANNNNTTC 1 cut(s) 1477
AspLEI GCGC 3 cut(s) 1718, 1787, 1998
AspS9I GGNCC 4 cut(s) 473, 1345, 1592, 1666
AsuC2I CCSGG 1 cut(s) 740
AvaII GGWCC 4 cut(s) 473, 1345, 1592, 1666
BaeGI GKGCMC 1 cut(s) 760
BaeI ACNNNNGTAYC 2 cut(s) 348, 381
BalI TGGCCA 2 cut(s) 1247, 1926
BarI GAAGNNNNNNTAC 2 cut(s) 2286, 2318
BauI CACGAG 1 cut(s) 2127
BbrPI CACGTG 1 cut(s) 392
BbsI GAAGAC 2 cut(s) 109, 1011
Bbv12I GWGCWC 2 cut(s) 760, 1830
BbvCI CCTCAGC 1 cut(s) 1164
BbvI GCAGC 2 cut(s) 83, 461
BccI CCATC 5 cut(s) 47, 57, 1237, 2053, 2456
BceAI ACGGC 3 cut(s) 221, 674, 966
BcgI CGANNNNNNTGC 2 cut(s) 2174, 2208
BciT130I CCWGG 3 cut(s) 603, 1201, 1459
BcnI CCSGG 1 cut(s) 740
BcoDI GTCTC 3 cut(s) 194, 644, 941
BfaI CTAG 2 cut(s) 869, 944
BfoI RGCGCY 1 cut(s) 1999
BfrI CTTAAG 1 cut(s) 1205
BfuAI ACCTGC 2 cut(s) 26, 1492
BglI GCCNNNNNGGC 1 cut(s) 1253
BisI GCNGC 4 cut(s) 72, 450, 818, 2445
BlsI GCNGC 4 cut(s) 73, 451, 819, 2446
Bme1390I CCNGG 4 cut(s) 603, 740, 1201, 1459
Bme18I GGWCC 4 cut(s) 473, 1345, 1592, 1666
BmeRI GACNNNNNGTC 1 cut(s) 967
BmgT120I GGNCC 4 cut(s) 473, 1345, 1592, 1666
BmiI GGNNCC 2 cut(s) 291, 980
BmrFI CCNGG 4 cut(s) 603, 740, 1201, 1459
BmrI ACTGGG 3 cut(s) 636, 1820, 1828
BmsI GCATC 9 cut(s) 136, 211, 468, 478, 693, 1860, 1882, 2246, 2287
BmuI ACTGGG 3 cut(s) 636, 1820, 1828
BpiI GAAGAC 2 cut(s) 109, 1011
BplI GAGNNNNNCTC 2 cut(s) 1790, 1822
BpmI CTGGAG 1 cut(s) 1278
Bpu10I CCTNAGC 1 cut(s) 1164
BpuMI CCSGG 1 cut(s) 740
BsaAI YACGTR 3 cut(s) 392, 571, 1531
BsaHI GRCGYC 1 cut(s) 1629
BsaJI CCNNGG 4 cut(s) 237, 690, 1248, 1458
BsaWI WCCGGW 2 cut(s) 829, 1417
BsaXI ACNNNNNCTCC 4 cut(s) 236, 266, 1569, 1599
Bsc4I CCNNNNNNNGG 7 cut(s) 482, 745, 949, 1358, 2142, 2307, 2473
Bse118I RCCGGY 2 cut(s) 829, 1589
Bse1I ACTGG 6 cut(s) 588, 631, 777, 1815, 1823, 2253
Bse3DI GCAATG 3 cut(s) 272, 469, 1641
BseAI TCCGGA 1 cut(s) 1417
BseBI CCWGG 3 cut(s) 603, 1201, 1459
BseDI CCNNGG 4 cut(s) 237, 690, 1248, 1458
BseGI GGATG 7 cut(s) 493, 636, 758, 1200, 1558, 2237, 2395
BseLI CCNNNNNNNGG 7 cut(s) 482, 745, 949, 1358, 2142, 2307, 2473
BseMI GCAATG 3 cut(s) 272, 469, 1641
BseMII CTCAG 1 cut(s) 1155
BseNI ACTGG 6 cut(s) 588, 631, 777, 1815, 1823, 2253
BseRI GAGGAG 3 cut(s) 980, 1190, 2001
BseSI GKGCMC 1 cut(s) 760
BseXI GCAGC 2 cut(s) 83, 461
BseYI CCCAGC 6 cut(s) 430, 491, 1696, 2321, 2342, 2383
BsgI GTGCAG 2 cut(s) 468, 1591
Bsh1236I CGCG 3 cut(s) 377, 1718, 1785
BshFI GGCC 5 cut(s) 236, 1127, 1247, 1926, 2466
BshTI ACCGGT 1 cut(s) 829
BsiHKAI GWGCWC 2 cut(s) 760, 1830
BsiSI CCGG 5 cut(s) 740, 830, 908, 1418, 1590
BsiWI CGTACG 1 cut(s) 567
BslFI GGGAC 4 cut(s) 1226, 1751, 1991, 2117
BslI CCNNNNNNNGG 7 cut(s) 482, 745, 949, 1358, 2142, 2307, 2473
BsmAI GTCTC 3 cut(s) 194, 644, 941
BsmBI CGTCTC 3 cut(s) 194, 644, 941
BsmFI GGGAC 4 cut(s) 1226, 1751, 1991, 2117
BsmI GAATGC 2 cut(s) 402, 2560
BsnI GGCC 5 cut(s) 236, 1127, 1247, 1926, 2466
Bsp1286I GDGCHC 2 cut(s) 760, 1830
Bsp13I TCCGGA 1 cut(s) 1417
Bsp1407I TGTACA 1 cut(s) 619
Bsp143I GATC 1 cut(s) 1801
BspANI GGCC 5 cut(s) 236, 1127, 1247, 1926, 2466
BspCNI CTCAG 1 cut(s) 1156
BspEI TCCGGA 1 cut(s) 1417
BspFNI CGCG 3 cut(s) 377, 1718, 1785
BspHI TCATGA 1 cut(s) 2055
BspLI GGNNCC 2 cut(s) 291, 980
BspMI ACCTGC 2 cut(s) 26, 1492
BspPI GGATC 1 cut(s) 1809
BspTI CTTAAG 1 cut(s) 1205
BsrBI CCGCTC 2 cut(s) 45, 817
BsrDI GCAATG 3 cut(s) 272, 469, 1641
BsrFI RCCGGY 2 cut(s) 829, 1589
BsrGI TGTACA 1 cut(s) 619
BsrI ACTGG 6 cut(s) 588, 631, 777, 1815, 1823, 2253
BssAI RCCGGY 2 cut(s) 829, 1589
BssECI CCNNGG 4 cut(s) 237, 690, 1248, 1458
BssMI GATC 1 cut(s) 1801
BssNAI GTATAC 1 cut(s) 1542
BssNI GRCGYC 1 cut(s) 1629
BssSI CACGAG 1 cut(s) 2127
BssT1I CCWWGG 1 cut(s) 1248
Bst1107I GTATAC 1 cut(s) 1542
Bst2BI CACGAG 1 cut(s) 2127
Bst2UI CCWGG 3 cut(s) 603, 1201, 1459
BstACI GRCGYC 1 cut(s) 1629
BstAFI CTTAAG 1 cut(s) 1205
BstAUI TGTACA 1 cut(s) 619
BstBAI YACGTR 3 cut(s) 392, 571, 1531
BstC8I GCNNGC 2 cut(s) 337, 2235
BstDEI CTNAG 2 cut(s) 1164, 2338
BstDSI CCRYGG 2 cut(s) 237, 690
BstF5I GGATG 7 cut(s) 493, 636, 758, 1200, 1558, 2237, 2395
BstFNI CGCG 3 cut(s) 377, 1718, 1785
BstH2I RGCGCY 1 cut(s) 1999
BstHHI GCGC 3 cut(s) 1718, 1787, 1998
BstKTI GATC 1 cut(s) 1804
BstMAI GTCTC 3 cut(s) 194, 644, 941
BstMBI GATC 1 cut(s) 1801
BstMWI GCNNNNNNNGC 5 cut(s) 686, 755, 1253, 1713, 2348
BstNI CCWGG 3 cut(s) 603, 1201, 1459
BstNSI RCATGY 3 cut(s) 339, 1012, 2185
BstSCI CCNGG 4 cut(s) 601, 738, 1199, 1457
BstSLI GKGCMC 1 cut(s) 760
BstSNI TACGTA 2 cut(s) 571, 1531
BstUI CGCG 3 cut(s) 377, 1718, 1785
BstV1I GCAGC 2 cut(s) 83, 461
BstV2I GAAGAC 2 cut(s) 109, 1011
BstXI CCANNNNNNTGG 2 cut(s) 430, 2248
BstZ17I GTATAC 1 cut(s) 1542
BsuRI GGCC 5 cut(s) 236, 1127, 1247, 1926, 2466
BtgI CCRYGG 2 cut(s) 237, 690
BtsCI GGATG 7 cut(s) 493, 636, 758, 1200, 1558, 2237, 2395
BtsI GCAGTG 3 cut(s) 510, 1352, 1579
BtsIMutI CAGTG 9 cut(s) 24, 167, 510, 581, 1352, 1393, 1579, 1808, 1987
BveI ACCTGC 2 cut(s) 26, 1492
Cac8I GCNNGC 2 cut(s) 337, 2235
CciI TCATGA 1 cut(s) 2055
CfoI GCGC 3 cut(s) 1718, 1787, 1998
Cfr10I RCCGGY 2 cut(s) 829, 1589
Cfr13I GGNCC 4 cut(s) 473, 1345, 1592, 1666
CseI GACGC 2 cut(s) 383, 1565
Csp6I GTAC 8 cut(s) 357, 568, 620, 665, 998, 1409, 1866, 2167
CspAI ACCGGT 1 cut(s) 829
CviQI GTAC 8 cut(s) 357, 568, 620, 665, 998, 1409, 1866, 2167
DdeI CTNAG 2 cut(s) 1164, 2338
DpnI GATC 1 cut(s) 1803
DpnII GATC 1 cut(s) 1801
DrdI GACNNNNNNGTC 1 cut(s) 1664
DriI GACNNNNNGTC 1 cut(s) 967
DseDI GACNNNNNNGTC 1 cut(s) 1664
EaeI YGGCCR 3 cut(s) 1125, 1245, 1924
Eam1105I GACNNNNNGTC 1 cut(s) 967
EciI GGCGGA 1 cut(s) 899
Eco105I TACGTA 2 cut(s) 571, 1531
Eco130I CCWWGG 1 cut(s) 1248
Eco47I GGWCC 4 cut(s) 473, 1345, 1592, 1666
Eco72I CACGTG 1 cut(s) 392
EcoO109I RGGNCCY 1 cut(s) 1666
EcoRI GAATTC 1 cut(s) 2146
EcoRII CCWGG 3 cut(s) 601, 1199, 1457
EcoT14I CCWWGG 1 cut(s) 1248
EcoT22I ATGCAT 2 cut(s) 272, 1875
ErhI CCWWGG 1 cut(s) 1248
Esp3I CGTCTC 3 cut(s) 194, 644, 941
FaqI GGGAC 4 cut(s) 1226, 1751, 1991, 2117
FauI CCCGC 2 cut(s) 742, 2075
FblI GTMKAC 2 cut(s) 1541, 2011
Fnu4HI GCNGC 4 cut(s) 72, 450, 818, 2445
FokI GGATG 7 cut(s) 500, 643, 765, 1207, 1565, 2224, 2382
Fsp4HI GCNGC 4 cut(s) 72, 450, 818, 2445
FspBI CTAG 2 cut(s) 869, 944
GlaI GCGC 3 cut(s) 1717, 1786, 1997
GluI GCNGC 4 cut(s) 72, 450, 818, 2445
GsaI CCCAGC 6 cut(s) 434, 495, 1700, 2325, 2346, 2387
GsuI CTGGAG 1 cut(s) 1278
HaeII RGCGCY 1 cut(s) 1999
HaeIII GGCC 5 cut(s) 236, 1127, 1247, 1926, 2466
HapII CCGG 5 cut(s) 740, 830, 908, 1418, 1590
HgaI GACGC 2 cut(s) 383, 1565
HhaI GCGC 3 cut(s) 1718, 1787, 1998
Hin1I GRCGYC 1 cut(s) 1629
Hin6I GCGC 3 cut(s) 1716, 1785, 1996
HinP1I GCGC 3 cut(s) 1716, 1785, 1996
HincII GTYRAC 2 cut(s) 316, 2012
HindII GTYRAC 2 cut(s) 316, 2012
HinfI GANTC 5 cut(s) 844, 968, 1130, 1185, 2219
HpaI GTTAAC 1 cut(s) 316
HpaII CCGG 5 cut(s) 740, 830, 908, 1418, 1590
Hpy188I TCNGA 6 cut(s) 220, 477, 810, 1384, 2419, 2509
Hpy188III TCNNGA 4 cut(s) 1418, 1669, 1773, 2056
Hpy99I CGWCG 2 cut(s) 658, 1634
HpyCH4IV ACGT 7 cut(s) 79, 391, 570, 1059, 1530, 1629, 2169
HpyF10VI GCNNNNNNNGC 5 cut(s) 686, 755, 1253, 1713, 2348
HpyF3I CTNAG 2 cut(s) 1164, 2338
HpySE526I ACGT 7 cut(s) 79, 391, 570, 1059, 1530, 1629, 2169
Hsp92I GRCGYC 1 cut(s) 1629
HspAI GCGC 3 cut(s) 1716, 1785, 1996
Kpn2I TCCGGA 1 cut(s) 1417
KspAI GTTAAC 1 cut(s) 316
Kzo9I GATC 1 cut(s) 1801
LmnI GCTCC 5 cut(s) 1614, 1825, 2310, 2331, 2374
Lsp1109I GCAGC 2 cut(s) 83, 461
LweI GCATC 9 cut(s) 136, 211, 468, 478, 693, 1860, 1882, 2246, 2287
MaeI CTAG 2 cut(s) 869, 944
MaeII ACGT 7 cut(s) 79, 391, 570, 1059, 1530, 1629, 2169
MalI GATC 1 cut(s) 1803
MbiI CCGCTC 2 cut(s) 45, 817
MboI GATC 1 cut(s) 1801
MhlI GDGCHC 2 cut(s) 760, 1830
MlsI TGGCCA 2 cut(s) 1247, 1926
MluNI TGGCCA 2 cut(s) 1247, 1926
MlyI GAGTC 3 cut(s) 853, 977, 2213
MmeI TCCRAC 3 cut(s) 1005, 1372, 1830
Mox20I TGGCCA 2 cut(s) 1247, 1926
Mph1103I ATGCAT 2 cut(s) 272, 1875
MroI TCCGGA 1 cut(s) 1417
MroXI GAANNNNTTC 1 cut(s) 1477
MscI TGGCCA 2 cut(s) 1247, 1926
MslI CAYNNNNRTG 5 cut(s) 111, 1193, 1241, 1920, 1943
Msp20I TGGCCA 2 cut(s) 1247, 1926
MspA1I CMGCKG 1 cut(s) 452
MspCI CTTAAG 1 cut(s) 1205
MspI CCGG 5 cut(s) 740, 830, 908, 1418, 1590
MspR9I CCNGG 4 cut(s) 603, 740, 1201, 1459
Mva1269I GAATGC 2 cut(s) 402, 2560
MvaI CCWGG 3 cut(s) 603, 1201, 1459
MvnI CGCG 3 cut(s) 377, 1718, 1785
MwoI GCNNNNNNNGC 5 cut(s) 686, 755, 1253, 1713, 2348
NciI CCSGG 1 cut(s) 740
NdeII GATC 1 cut(s) 1801
NlaIV GGNNCC 2 cut(s) 291, 980
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 2 cut(s) 437, 1331
NsiI ATGCAT 2 cut(s) 272, 1875
NspI RCATGY 3 cut(s) 339, 1012, 2185
PaeI GCATGC 1 cut(s) 339
PagI TCATGA 1 cut(s) 2055
PaqCI CACCTGC 1 cut(s) 1492
PciI ACATGT 1 cut(s) 1008
PcsI WCGNNNNNNNCGW 1 cut(s) 969
PctI GAATGC 2 cut(s) 402, 2560
PdmI GAANNNNTTC 1 cut(s) 1477
PfeI GAWTC 2 cut(s) 1130, 1185
Pfl23II CGTACG 1 cut(s) 567
PflFI GACNNNGTC 1 cut(s) 2051
PflMI CCANNNNNTGG 1 cut(s) 1358
PfoI TCCNGGA 1 cut(s) 601
PinAI ACCGGT 1 cut(s) 829
PkrI GCNGC 4 cut(s) 73, 451, 819, 2446
PleI GAGTC 3 cut(s) 852, 976, 2213
PmaCI CACGTG 1 cut(s) 392
PmlI CACGTG 1 cut(s) 392
PpsI GAGTC 3 cut(s) 852, 976, 2213
Ppu21I YACGTR 3 cut(s) 392, 571, 1531
PpuMI RGGWCCY 1 cut(s) 1666
PscI ACATGT 1 cut(s) 1008
Psp5II RGGWCCY 1 cut(s) 1666
Psp6I CCWGG 3 cut(s) 601, 1199, 1457
PspCI CACGTG 1 cut(s) 392
PspFI CCCAGC 6 cut(s) 430, 491, 1696, 2321, 2342, 2383
PspGI CCWGG 3 cut(s) 601, 1199, 1457
PspLI CGTACG 1 cut(s) 567
PspN4I GGNNCC 2 cut(s) 291, 980
PspPI GGNCC 4 cut(s) 473, 1345, 1592, 1666
PspPPI RGGWCCY 1 cut(s) 1666
PsyI GACNNNGTC 1 cut(s) 2051
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 8 cut(s) 358, 569, 621, 666, 999, 1410, 1867, 2168
RsaNI GTAC 8 cut(s) 357, 568, 620, 665, 998, 1409, 1866, 2167
RseI CAYNNNNRTG 5 cut(s) 111, 1193, 1241, 1920, 1943
SalI GTCGAC 1 cut(s) 2010
SatI GCNGC 4 cut(s) 72, 450, 818, 2445
Sau3AI GATC 1 cut(s) 1801
Sau96I GGNCC 4 cut(s) 473, 1345, 1592, 1666
SchI GAGTC 3 cut(s) 853, 977, 2213
ScrFI CCNGG 4 cut(s) 603, 740, 1201, 1459
SduI GDGCHC 2 cut(s) 760, 1830
SfaNI GCATC 9 cut(s) 136, 211, 468, 478, 693, 1860, 1882, 2246, 2287
SinI GGWCC 4 cut(s) 473, 1345, 1592, 1666
SmiMI CAYNNNNRTG 5 cut(s) 111, 1193, 1241, 1920, 1943
SmlI CTYRAG 1 cut(s) 1205
SmoI CTYRAG 1 cut(s) 1205
SnaBI TACGTA 2 cut(s) 571, 1531
SphI GCATGC 1 cut(s) 339
SspI AATATT 1 cut(s) 300
SspMI CTAG 2 cut(s) 869, 944
StyD4I CCNGG 4 cut(s) 601, 738, 1199, 1457
StyI CCWWGG 1 cut(s) 1248
TaiI ACGT 7 cut(s) 82, 394, 573, 1062, 1533, 1632, 2172
TaqI TCGA 2 cut(s) 41, 2011
TatI WGTACW 3 cut(s) 619, 997, 1408
TauI GCSGC 2 cut(s) 820, 2447
TfiI GAWTC 2 cut(s) 1130, 1185
TscAI CASTG 9 cut(s) 24, 174, 510, 588, 1359, 1393, 1579, 1815, 1987
TseFI GTSAC 2 cut(s) 437, 1331
TseI GCWGC 2 cut(s) 71, 449
Tsp45I GTSAC 2 cut(s) 437, 1331
TspGWI ACGGA 4 cut(s) 344, 747, 961, 1674
TspRI CASTG 9 cut(s) 24, 174, 510, 588, 1359, 1393, 1579, 1815, 1987
Tth111I GACNNNGTC 1 cut(s) 2051
Van91I CCANNNNNTGG 1 cut(s) 1358
Vha464I CTTAAG 1 cut(s) 1205
VneI GTGCAC 1 cut(s) 756
VpaK11BI GGWCC 4 cut(s) 473, 1345, 1592, 1666
XapI RAATTY 3 cut(s) 383, 682, 2146
XceI RCATGY 3 cut(s) 339, 1012, 2185
XcmI CCANNNNNNNNNTGG 2 cut(s) 82, 1355
XmiI GTMKAC 2 cut(s) 1541, 2011
XmnI GAANNNNTTC 1 cut(s) 1477
XspI CTAG 2 cut(s) 869, 944
ZraI GACGTC 1 cut(s) 1630
Zsp2I ATGCAT 2 cut(s) 272, 1875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.