Rh6CG151400

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000124
Physical Location & Seq
Forward (+)
19763447 .. 19765161
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG151400.1

Sequence Viewer

Length: 429 bp
ATGTATCACACCAAAGGGCCATACTGGATGCTAGAAGTGATGATGAGTAACGATGAACTTATTTTCGGTCATGAATGGCAGCATTTCGTTGACGCCATTGGTCTGGACAGGAATAAATGTGCATTCTTCAAATATCTTGGGAATTTGGCATTCAGTGTTATAGTTTTTGACTTGCACCTGGGAACAGTGTTGGGGGATAATATGGTTGATCCAAGAATTGAGGGTTCGAAGCAAGTGGGGATGGATCTGATTTCAACTGATGCGGTGGTGGGAGACCAGTCCAATCAGGCAGAGGAAGCTATGCCTTTGGAGGAGAACGCGGTGGGAGACATACAAAATCAAGTAGGGGAAGCTATGCCAATGGCCGAAAATGTGGTCATGTTACCGTCGTGCTTCTTGACGATCCAAAGGGGTCATGGGTTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

142

Amino Acids

15.81

Weight (kDa)

4.43

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 320
AciI CCGC 2 cut(s) 263, 320
AclWI GGATC 3 cut(s) 203, 252, 397
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 142
AcyI GRCGYC 1 cut(s) 93
AgsI TTSAA 3 cut(s) 130, 255, 424
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 2 cut(s) 299, 353
AluI AGCT 2 cut(s) 299, 353
Alw26I GTCTC 2 cut(s) 267, 321
AlwI GGATC 3 cut(s) 203, 252, 397
AoxI GGCC 2 cut(s) 17, 363
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 142
ArsI GACNNNNNNTTYG 2 cut(s) 360, 392
AspS9I GGNCC 1 cut(s) 17
AsuII TTCGAA 1 cut(s) 227
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 179
BcoDI GTCTC 2 cut(s) 267, 321
BfaI CTAG 1 cut(s) 32
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 2 cut(s) 18, 250
Bpu14I TTCGAA 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 29, 277
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 2 cut(s) 33, 246
BseNI ACTGG 2 cut(s) 29, 277
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 91
Bsh1236I CGCG 1 cut(s) 320
BshFI GGCC 2 cut(s) 19, 365
BsmAI GTCTC 2 cut(s) 267, 321
BsmI GAATGC 2 cut(s) 122, 149
BsnI GGCC 2 cut(s) 19, 365
Bso31I GGTCTC 1 cut(s) 267
Bsp119I TTCGAA 1 cut(s) 227
Bsp143I GATC 3 cut(s) 208, 244, 402
BspACI CCGC 2 cut(s) 263, 320
BspANI GGCC 2 cut(s) 19, 365
BspFNI CGCG 1 cut(s) 320
BspHI TCATGA 1 cut(s) 70
BspPI GGATC 3 cut(s) 203, 252, 397
BspT104I TTCGAA 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 267
BsrI ACTGG 2 cut(s) 29, 277
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 3 cut(s) 208, 244, 402
BssNI GRCGYC 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 2 cut(s) 187, 387
BstACI GRCGYC 1 cut(s) 93
BstBI TTCGAA 1 cut(s) 227
BstF5I GGATG 2 cut(s) 33, 246
BstFNI CGCG 1 cut(s) 320
BstKTI GATC 3 cut(s) 211, 247, 405
BstMAI GTCTC 2 cut(s) 267, 321
BstMBI GATC 3 cut(s) 208, 244, 402
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 244
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 2 cut(s) 19, 365
BtsCI GGATG 2 cut(s) 33, 246
BtsIMutI CAGTG 2 cut(s) 160, 192
CciI TCATGA 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 17
CseI GACGC 1 cut(s) 101
CviAII CATG 3 cut(s) 71, 379, 416
CviJI RGCY 4 cut(s) 19, 299, 353, 365
CviKI_1 RGCY 4 cut(s) 19, 299, 353, 365
DpnI GATC 3 cut(s) 210, 246, 404
DpnII GATC 3 cut(s) 208, 244, 402
EaeI YGGCCR 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 177
FaeI CATG 3 cut(s) 74, 382, 419
FaiI YATR 9 cut(s) 22, 72, 161, 203, 302, 332, 356, 380, 417
FatI CATG 3 cut(s) 70, 378, 415
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 2 cut(s) 40, 253
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 1 cut(s) 32
GluI GCNGC 1 cut(s) 80
HaeIII GGCC 2 cut(s) 19, 365
HgaI GACGC 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 3 cut(s) 74, 382, 419
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 3 cut(s) 71, 104, 397
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 391
HpyCH4III ACNGT 2 cut(s) 187, 387
HpyCH4V TGCA 2 cut(s) 122, 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 3 cut(s) 74, 382, 419
Kzo9I GATC 3 cut(s) 208, 244, 402
LpnPI CCDG 7 cut(s) 10, 89, 94, 164, 191, 272, 290
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 2 cut(s) 18, 250
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 2 cut(s) 47, 381
MalI GATC 3 cut(s) 210, 246, 404
MboI GATC 3 cut(s) 208, 244, 402
MboII GAAGA 1 cut(s) 118
MflI RGATCY 1 cut(s) 244
MluCI AATT 3 cut(s) 142, 216, 424
MnlI CCTC 3 cut(s) 214, 286, 304
MseI TTAA 1 cut(s) 427
MspR9I CCNGG 1 cut(s) 179
Mva1269I GAATGC 2 cut(s) 122, 149
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 3 cut(s) 208, 244, 402
NlaIII CATG 3 cut(s) 74, 382, 419
NspV TTCGAA 1 cut(s) 227
PagI TCATGA 1 cut(s) 70
PctI GAATGC 2 cut(s) 122, 149
PkrI GCNGC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspPI GGNCC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 244
SaqAI TTAA 1 cut(s) 427
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 3 cut(s) 208, 244, 402
Sau96I GGNCC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 179
SetI ASST 3 cut(s) 180, 301, 355
SfaNI GCATC 2 cut(s) 18, 250
SfuI TTCGAA 1 cut(s) 227
Sse9I AATT 3 cut(s) 142, 216, 424
SsiI CCGC 2 cut(s) 263, 320
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 187, 387
TaqI TCGA 1 cut(s) 227
TaqII GACCGA 1 cut(s) 56
TasI AATT 3 cut(s) 142, 216, 424
Tru1I TTAA 1 cut(s) 427
Tru9I TTAA 1 cut(s) 427
TscAI CASTG 2 cut(s) 160, 192
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 69, 87
TspRI CASTG 2 cut(s) 160, 192
XapI RAATTY 1 cut(s) 142
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.