Rroxscaffold_1G00032770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000124
Physical Location & Seq
Reverse (-)
47105511 .. 47107338
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032770.1

Sequence Viewer

Length: 456 bp
ATGAGGCTGAAAGGTAGCATTGACTTTGGGATATTCGATCATGTTGTTCCTCACAATGTTCGACACGAGAAGAATGGAGTTGATTGTGGCATCTTTGTCACCCGAACATGTTGCTCTTTAAGACTAAGTGGAATGAAGGGGCGGTTCGGGGTCGCCGCTTATTTGCCCTCCAATGCTTTCGGGCGAATAATCCGGAAGCGCTGTTCGCCATGCGGTCCGAACAATGAGGCTATCGGCGTTTTATGTCTTGAGCATGTTGCGGATAATATGTGGAAATTCGGACGTCCAAAAAGCCGTCATAGACATGATGGTCGGTCGCACGGACTAGAGGCAAAGCGGGTGGAGTGCGAGTCTGTCGAGAGTTATGTGACGGGGAGGTGTTTGTGGGAGGACATGCGCTCCACGATATCGGGAATCACATCCCCACGACGGTCCCACCCTTCCGGAAAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.91

Weight (kDa)

9.69

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 309
AatII GACGTC 1 cut(s) 286
AccIII TCCGGA 2 cut(s) 192, 443
AciI CCGC 5 cut(s) 142, 156, 213, 260, 337
AcsI RAATTY 1 cut(s) 275
AcyI GRCGYC 1 cut(s) 283
AfeI AGCGCT 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 429
AflIII ACRYGT 1 cut(s) 107
AloI GAACNNNNNNTCC 2 cut(s) 187, 219
Aor13HI TCCGGA 2 cut(s) 192, 443
Aor51HI AGCGCT 1 cut(s) 200
ApoI RAATTY 1 cut(s) 275
AspLEI GCGC 2 cut(s) 201, 399
AspS9I GGNCC 2 cut(s) 215, 432
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 2 cut(s) 215, 432
BauI CACGAG 1 cut(s) 65
BccI CCATC 1 cut(s) 302
BceAI ACGGC 1 cut(s) 279
BcgI CGANNNNNNTGC 2 cut(s) 93, 127
BfaI CTAG 1 cut(s) 326
BfoI RGCGCY 1 cut(s) 202
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme18I GGWCC 2 cut(s) 215, 432
BmgT120I GGNCC 2 cut(s) 215, 432
BmiI GGNNCC 1 cut(s) 434
BmsI GCATC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 283
BsaWI WCCGGW 2 cut(s) 192, 443
BsaXI ACNNNNNCTCC 4 cut(s) 335, 365, 383, 413
Bsc4I CCNNNNNNNGG 1 cut(s) 429
BseAI TCCGGA 2 cut(s) 192, 443
BseGI GGATG 1 cut(s) 419
BseLI CCNNNNNNNGG 1 cut(s) 429
Bsh1285I CGRYCG 1 cut(s) 317
BsiEI CGRYCG 1 cut(s) 317
BsiSI CCGG 2 cut(s) 193, 444
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 418
Bsp13I TCCGGA 2 cut(s) 192, 443
Bsp143I GATC 1 cut(s) 37
BspACI CCGC 5 cut(s) 142, 156, 213, 260, 337
BspEI TCCGGA 2 cut(s) 192, 443
BspLI GGNNCC 1 cut(s) 434
BssMI GATC 1 cut(s) 37
BssNI GRCGYC 1 cut(s) 283
BssSI CACGAG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 432
BstACI GRCGYC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 419
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 2 cut(s) 201, 399
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMCI CGRYCG 1 cut(s) 317
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNSI RCATGY 3 cut(s) 111, 257, 397
BtsCI GGATG 1 cut(s) 419
CfoI GCGC 2 cut(s) 201, 399
Cfr13I GGNCC 2 cut(s) 215, 432
CpoI CGGWCCG 1 cut(s) 215
CspCI CAANNNNNGTGG 2 cut(s) 321, 356
CspI CGGWCCG 1 cut(s) 215
CviAII CATG 6 cut(s) 41, 108, 210, 254, 305, 394
CviJI RGCY 3 cut(s) 7, 230, 294
CviKI_1 RGCY 3 cut(s) 7, 230, 294
DdeI CTNAG 1 cut(s) 125
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
DrdI GACNNNNNNGTC 1 cut(s) 309
DseDI GACNNNNNNGTC 1 cut(s) 309
Eco32I GATATC 1 cut(s) 408
Eco47I GGWCC 2 cut(s) 215, 432
Eco47III AGCGCT 1 cut(s) 200
EcoRV GATATC 1 cut(s) 408
FaeI CATG 6 cut(s) 44, 111, 213, 257, 308, 397
FaqI GGGAC 1 cut(s) 418
FatI CATG 6 cut(s) 40, 107, 209, 253, 304, 393
FauI CCCGC 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 406
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 326
GlaI GCGC 2 cut(s) 200, 398
GluI GCNGC 1 cut(s) 156
HaeII RGCGCY 1 cut(s) 202
HapII CCGG 2 cut(s) 193, 444
HhaI GCGC 2 cut(s) 201, 399
Hin1I GRCGYC 1 cut(s) 283
Hin1II CATG 6 cut(s) 44, 111, 213, 257, 308, 397
Hin6I GCGC 2 cut(s) 199, 397
HinP1I GCGC 2 cut(s) 199, 397
HinfI GANTC 2 cut(s) 350, 414
HpaII CCGG 2 cut(s) 193, 444
HphI GGTGA 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 219, 281
Hpy188III TCNNGA 5 cut(s) 193, 248, 358, 411, 444
Hpy99I CGWCG 1 cut(s) 432
HpyAV CCTTC 2 cut(s) 130, 450
HpyCH4III ACNGT 1 cut(s) 432
HpyCH4IV ACGT 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 283
Hsp92I GRCGYC 1 cut(s) 283
Hsp92II CATG 6 cut(s) 44, 111, 213, 257, 308, 397
HspAI GCGC 2 cut(s) 199, 397
Kpn2I TCCGGA 2 cut(s) 192, 443
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 404
LpnPI CCDG 1 cut(s) 206
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 326
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 2 cut(s) 97, 367
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 1 cut(s) 82
MluCI AATT 1 cut(s) 275
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 6 cut(s) 60, 178, 220, 322, 369, 382
MroI TCCGGA 2 cut(s) 192, 443
MseI TTAA 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 2 cut(s) 193, 444
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 1 cut(s) 37
NlaIII CATG 6 cut(s) 44, 111, 213, 257, 308, 397
NlaIV GGNNCC 1 cut(s) 434
NmuCI GTSAC 2 cut(s) 97, 367
NspI RCATGY 3 cut(s) 111, 257, 397
PciI ACATGT 1 cut(s) 107
PfeI GAWTC 1 cut(s) 414
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PscI ACATGT 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 434
PspPI GGNCC 2 cut(s) 215, 432
RseI CAYNNNNRTG 1 cut(s) 303
Rsr2I CGGWCCG 1 cut(s) 215
RsrII CGGWCCG 1 cut(s) 215
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 2 cut(s) 215, 432
SchI GAGTC 1 cut(s) 359
SetI ASST 3 cut(s) 16, 286, 380
SfaNI GCATC 1 cut(s) 99
SinI GGWCC 2 cut(s) 215, 432
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 1 cut(s) 275
SsiI CCGC 5 cut(s) 142, 156, 213, 260, 337
SspMI CTAG 1 cut(s) 326
TaaI ACNGT 1 cut(s) 432
TaiI ACGT 1 cut(s) 286
TaqI TCGA 3 cut(s) 36, 61, 357
TaqII GACCGA 1 cut(s) 303
TasI AATT 1 cut(s) 275
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 414
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TseFI GTSAC 2 cut(s) 97, 367
Tsp45I GTSAC 2 cut(s) 97, 367
TspDTI ATGAA 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 336
VpaK11BI GGWCC 2 cut(s) 215, 432
XapI RAATTY 1 cut(s) 275
XceI RCATGY 3 cut(s) 111, 257, 397
XspI CTAG 1 cut(s) 326
ZraI GACGTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.