Rorug04G0189700

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000124
Physical Location & Seq
Forward (+)
32919961 .. 32922821
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0189700.1

Sequence Viewer

Length: 1743 bp
ATGATACGCTCAAGTCCTCGTGCTGTTCTTGAAACCACATATAGGCTTGTTCTATCAAAATCCACACACAACTTGGCCACATTAGAACACACTTGCTCTGATCTGTTACGTACATGTGCCCAATCCTCCAACTTACCCAATGGCAGAGCAATTCATGCAAAACTCTTCAAAGGGTCTCTGCCCTTTTCGCCGTTCCTTCAAAATCATCTACTCAACATGTATGTCAAATGTGGCCATCTCAACAATGCCCTCCAACTGTTCGACGAAATGCCTGAGAGAAATGTTGTGTCTTGGTCTGTGCTCATTAAAGGGTTTGTGCAACACGGCTGCCCCAATGAAGCCCTGTCTTTGTTTGGTCGTATGCACAGGGATGGCACCACCATGCCCAATGAGTTCACATTGGTCAGCTCCCTCCAGGCATGCTCCTTGTGTGGGAATCTGACTCAAGCTTACCAGGTTTACGCATTCATTGTTCGTCTCGGGTTCGAGTGGAATGTGTTCCTCACTAATGCGTTGTTGACTGTTTTAGTAAGACATGGTGAACTAACAGAGGCTCTGCAAGTGTTTGAGAACTGCCCCAATAAAGATATAGTGTCTTGGAATGCTATCATGGCTGGCTACTTGGAGTATGATTGTTCAGAAGTAGCTGCATTCTGGTGGAGAATGAATCGCGAGGGAGTGTTGCGCGATAGCTACACATTTTCGAGTGTGCTCACTGGGTTGGCTGCTGTCACTGATCTTAAAATGGGTGTGCAGGTTCATGCACAGCTTGTGAGGTATGGCCATGGGGCGGAGATTTGCGTGGGGAATTCCCTGGCTGATATGTATATTAAAAATCATCAGTTGCTGGATGGTTTCAAAGCTTTTCATGAGATGCCTTTCAAAGATGTGTGTTCATGGACTGAAATGGCTGCTGGCTGCCTGCAATGTGGGGAACCAAGCAAAGCACTCGAGGTTATTGCTCAAATGAAGAAAGTTGGGATACAGCCAAACAAGTTCACACTTGCAACTGCCCTGAATGCGTGTGCCAATCTGGCTTCGTTGGAGGAAGGGAAGAAATTCCATGGTTTGAGAATTAAACTTGAAACTTGTACTGATGTGGACGTCTGCGTAGATAATGCTCTGCTGGACATGTATGCAAAATGTGGATGCATGGATGGTGCACGGAGTGTTTTTGAGTCGATGAAGTATAGTTCTGTAGTCTCATGGACCACAATGATAATGGGGTGCGCACAAAATGGGAAGGCTAGAAAAGCTCTTGAGATTTTTGATAAGATGAGGCTGCAGGAAGGCATTGAGCCAAATTACATCACCTTTATTTGTGTGCTTTATGCATGTAGCCAAGGAGGGTTTATTGATGAGGGATGGAAGTACTTTGCCTCCATGACTCAAAACTATGGCATCACGCCAGGAGAAGACCATTATGCATGCATGGTTGATCTTCTAGGCCGAGCTGGACGTATAAAGGAAGCTGAGGAATTGATCAAGAACATGCCTTTAAGACCAGGTGTTTTGGTTTGGCAGACTTTGCTTGGTGCTTGTCAGCTACTTGGGGATACAGAAACAGGAAAGCGTGCAGCAGAGCATGCATTAGAGATAAACAGAACAGAGCCGTCAACATATATATTGCTATCAAACATGTTTGCTGGTTTGAGCAATTGGGACAGCGTCGGGGTGCTGAGGAAACTAATGGACTCTAGGGATGTAAAGAAATTGCCTGGATCCAGTTGGATTGAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

580

Amino Acids

64.62

Weight (kDa)

6.47

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 93 - 141 7.8e-07 PPR repeat family
PPR PF01535 96 - 125 1.2e-07 PPR repeat
PPR_2 PF13041 295 - 344 2.4e-08 PPR repeat family
PPR_2 PF13041 399 - 447 1.7e-09 PPR repeat family
PPR_3 PF13812 399 - 446 1.7e-07 Pentatricopeptide repeat domain
PPR PF01535 401 - 427 2.6e-08 PPR repeat
PPR_long PF17177 406 - 544 3.1e-08 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 519 - 579 7.3e-16 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1107
Acc16I TGCGCA 1 cut(s) 1231
Acc36I ACCTGC 1 cut(s) 745
AccB1I GGYRCC 1 cut(s) 374
AccII CGCG 2 cut(s) 672, 687
AciI CCGC 1 cut(s) 791
AclWI GGATC 2 cut(s) 1716, 1729
AcoI YGGCCR 3 cut(s) 75, 232, 781
AcsI RAATTY 2 cut(s) 808, 1058
AcyI GRCGYC 1 cut(s) 1104
AdeI CACNNNGTG 1 cut(s) 1169
AfaI GTAC 3 cut(s) 112, 1093, 1373
AfiI CCNNNNNNNGG 3 cut(s) 42, 432, 790
AflIII ACRYGT 4 cut(s) 113, 216, 1131, 1638
AgsI TTSAA 7 cut(s) 32, 169, 200, 859, 883, 1085, 1736
AjnI CCWGG 6 cut(s) 414, 453, 813, 1408, 1504, 1717
Alw21I GWGCWC 3 cut(s) 303, 714, 1165
Alw26I GTCTC 3 cut(s) 180, 482, 1207
Alw44I GTGCAC 1 cut(s) 1161
AlwI GGATC 2 cut(s) 1716, 1729
AlwNI CAGNNNCTG 1 cut(s) 847
Ama87I CYCGRG 2 cut(s) 479, 950
AoxI GGCC 4 cut(s) 75, 232, 781, 1447
ApaLI GTGCAC 1 cut(s) 1161
ApeKI GCWGC 7 cut(s) 327, 647, 725, 911, 918, 1282, 1577
ApoI RAATTY 2 cut(s) 808, 1058
Asp700I GAANNNNTTC 2 cut(s) 497, 1058
AspLEI GCGC 2 cut(s) 687, 1232
AspS9I GGNCC 1 cut(s) 1209
AsuHPI GGTGA 2 cut(s) 551, 1303
AvaI CYCGRG 2 cut(s) 479, 950
AvaII GGWCC 1 cut(s) 1209
BaeGI GKGCMC 2 cut(s) 121, 1165
BalI TGGCCA 3 cut(s) 77, 234, 783
BamHI GGATCC 1 cut(s) 1721
BanI GGYRCC 1 cut(s) 374
BauI CACGAG 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 1422
Bbv12I GWGCWC 3 cut(s) 303, 714, 1165
BbvCI CCTCAGC 2 cut(s) 1473, 1679
BbvI GCAGC 7 cut(s) 314, 634, 712, 898, 905, 1269, 1589
BccI CCATC 5 cut(s) 243, 365, 845, 1151, 1359
BceAI ACGGC 3 cut(s) 175, 340, 1597
BcgI CGANNNNNNTGC 4 cut(s) 931, 941, 965, 975
BciT130I CCWGG 6 cut(s) 416, 455, 815, 1410, 1506, 1719
BciVI GTATCC 2 cut(s) 975, 1549
BclI TGATCA 1 cut(s) 1482
BcoDI GTCTC 3 cut(s) 180, 482, 1207
BfaI CTAG 3 cut(s) 1248, 1445, 1698
BfmI CTRYAG 2 cut(s) 1197, 1283
BfuAI ACCTGC 1 cut(s) 745
BfuI GTATCC 2 cut(s) 975, 1549
BglI GCCNNNNNGGC 1 cut(s) 1034
BisI GCNGC 7 cut(s) 328, 648, 726, 912, 919, 1283, 1578
BlsI GCNGC 7 cut(s) 329, 649, 727, 913, 920, 1284, 1579
BmcAI AGTACT 1 cut(s) 1373
Bme1390I CCNGG 6 cut(s) 416, 455, 815, 1410, 1506, 1719
Bme18I GGWCC 1 cut(s) 1209
BmeT110I CYCGRG 2 cut(s) 479, 950
BmgT120I GGNCC 1 cut(s) 1209
BmiI GGNNCC 3 cut(s) 376, 936, 1723
BmrFI CCNGG 6 cut(s) 416, 455, 815, 1410, 1506, 1719
BmrI ACTGGG 1 cut(s) 726
BmsI GCATC 3 cut(s) 864, 1139, 1410
BmuI ACTGGG 1 cut(s) 726
BpiI GAAGAC 1 cut(s) 1422
BpmI CTGGAG 1 cut(s) 398
Bpu10I CCTNAGC 2 cut(s) 1473, 1679
BpuEI CTTGAG 2 cut(s) 429, 1280
BsaAI YACGTR 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 1104
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 4 cut(s) 784, 813, 1063, 1342
BsaXI ACNNNNNCTCC 2 cut(s) 1364, 1394
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 432, 790
Bse1I ACTGG 2 cut(s) 721, 1725
Bse3DI GCAATG 1 cut(s) 932
BseBI CCWGG 6 cut(s) 416, 455, 815, 1410, 1506, 1719
BseDI CCNNGG 4 cut(s) 784, 813, 1063, 1342
BseGI GGATG 6 cut(s) 376, 856, 1154, 1162, 1370, 1708
BseLI CCNNNNNNNGG 3 cut(s) 42, 432, 790
BseMI GCAATG 1 cut(s) 932
BseMII CTCAG 3 cut(s) 264, 1464, 1670
BseNI ACTGG 2 cut(s) 721, 1725
BseSI GKGCMC 2 cut(s) 121, 1165
BseXI GCAGC 7 cut(s) 314, 634, 712, 898, 905, 1269, 1589
BsgI GTGCAG 2 cut(s) 773, 1596
Bsh1236I CGCG 2 cut(s) 672, 687
BshFI GGCC 4 cut(s) 77, 234, 783, 1449
BshNI GGYRCC 1 cut(s) 374
BsiHKAI GWGCWC 3 cut(s) 303, 714, 1165
BsiHKCI CYCGRG 2 cut(s) 479, 950
BslFI GGGAC 1 cut(s) 1676
BslI CCNNNNNNNGG 3 cut(s) 42, 432, 790
BsmAI GTCTC 3 cut(s) 180, 482, 1207
BsmBI CGTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 1676
BsmI GAATGC 4 cut(s) 464, 607, 650, 1024
BsnI GGCC 4 cut(s) 77, 234, 783, 1449
Bso31I GGTCTC 1 cut(s) 180
BsoBI CYCGRG 2 cut(s) 479, 950
Bsp1286I GDGCHC 4 cut(s) 121, 303, 714, 1165
Bsp143I GATC 5 cut(s) 100, 736, 1438, 1482, 1721
Bsp19I CCATGG 2 cut(s) 784, 1063
Bsp68I TCGCGA 1 cut(s) 672
BspACI CCGC 1 cut(s) 791
BspANI GGCC 4 cut(s) 77, 234, 783, 1449
BspCNI CTCAG 3 cut(s) 265, 1465, 1671
BspFNI CGCG 2 cut(s) 672, 687
BspHI TCATGA 1 cut(s) 868
BspLI GGNNCC 3 cut(s) 376, 936, 1723
BspMAI CTGCAG 1 cut(s) 1287
BspMI ACCTGC 1 cut(s) 745
BspPI GGATC 2 cut(s) 1716, 1729
BspT107I GGYRCC 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 932
BsrI ACTGG 2 cut(s) 721, 1725
BssECI CCNNGG 4 cut(s) 784, 813, 1063, 1342
BssMI GATC 5 cut(s) 100, 736, 1438, 1482, 1721
BssNI GRCGYC 1 cut(s) 1104
BssSI CACGAG 1 cut(s) 18
BssT1I CCWWGG 3 cut(s) 784, 1063, 1342
Bst2BI CACGAG 1 cut(s) 18
Bst2UI CCWGG 6 cut(s) 416, 455, 815, 1410, 1506, 1719
Bst4CI ACNGT 2 cut(s) 258, 523
Bst6I CTCTTC 1 cut(s) 170
BstACI GRCGYC 1 cut(s) 1104
BstAPI GCANNNNNTGC 3 cut(s) 155, 1528, 1586
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 7 cut(s) 421, 616, 916, 923, 1429, 1575, 1587
BstDEI CTNAG 3 cut(s) 273, 1473, 1679
BstDSI CCRYGG 2 cut(s) 784, 1063
BstF5I GGATG 6 cut(s) 376, 856, 1154, 1162, 1370, 1708
BstFNI CGCG 2 cut(s) 672, 687
BstHHI GCGC 2 cut(s) 687, 1232
BstKTI GATC 5 cut(s) 103, 739, 1441, 1485, 1724
BstMAI GTCTC 3 cut(s) 180, 482, 1207
BstMBI GATC 5 cut(s) 100, 736, 1438, 1482, 1721
BstMWI GCNNNNNNNGC 8 cut(s) 155, 187, 611, 1019, 1034, 1253, 1528, 1586
BstNI CCWGG 6 cut(s) 416, 455, 815, 1410, 1506, 1719
BstNSI RCATGY 9 cut(s) 117, 220, 423, 1135, 1338, 1431, 1495, 1589, 1642
BstSCI CCNGG 6 cut(s) 414, 453, 813, 1408, 1504, 1717
BstSFI CTRYAG 2 cut(s) 1197, 1283
BstSLI GKGCMC 2 cut(s) 121, 1165
BstSNI TACGTA 1 cut(s) 110
BstUI CGCG 2 cut(s) 672, 687
BstV1I GCAGC 7 cut(s) 314, 634, 712, 898, 905, 1269, 1589
BstV2I GAAGAC 1 cut(s) 1422
BstX2I RGATCY 1 cut(s) 1721
BstYI RGATCY 1 cut(s) 1721
BsuI GTATCC 2 cut(s) 975, 1549
BsuRI GGCC 4 cut(s) 77, 234, 783, 1449
BtgI CCRYGG 2 cut(s) 784, 1063
BtsCI GGATG 6 cut(s) 376, 856, 1154, 1162, 1370, 1708
BtsIMutI CAGTG 2 cut(s) 714, 732
BtuMI TCGCGA 1 cut(s) 672
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 7 cut(s) 421, 616, 916, 923, 1429, 1575, 1587
CaiI CAGNNNCTG 1 cut(s) 847
CciI TCATGA 1 cut(s) 868
CfoI GCGC 2 cut(s) 687, 1232
Cfr13I GGNCC 1 cut(s) 1209
CseI GACGC 1 cut(s) 1657
CsiI ACCWGGT 2 cut(s) 453, 1504
Csp6I GTAC 3 cut(s) 111, 1092, 1372
CviQI GTAC 3 cut(s) 111, 1092, 1372
DdeI CTNAG 3 cut(s) 273, 1473, 1679
DpnI GATC 5 cut(s) 102, 738, 1440, 1484, 1723
DpnII GATC 5 cut(s) 100, 736, 1438, 1482, 1721
DraIII CACNNNGTG 1 cut(s) 1169
EaeI YGGCCR 3 cut(s) 75, 232, 781
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EciI GGCGGA 1 cut(s) 806
Eco105I TACGTA 1 cut(s) 110
Eco130I CCWWGG 3 cut(s) 784, 1063, 1342
Eco31I GGTCTC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 1209
Eco88I CYCGRG 2 cut(s) 479, 950
EcoRI GAATTC 1 cut(s) 808
EcoRII CCWGG 6 cut(s) 414, 453, 813, 1408, 1504, 1717
EcoT14I CCWWGG 3 cut(s) 784, 1063, 1342
EcoT22I ATGCAT 5 cut(s) 1154, 1336, 1429, 1433, 1591
ErhI CCWWGG 3 cut(s) 784, 1063, 1342
Esp3I CGTCTC 1 cut(s) 482
FaqI GGGAC 1 cut(s) 1676
FbaI TGATCA 1 cut(s) 1482
Fnu4HI GCNGC 7 cut(s) 328, 648, 726, 912, 919, 1283, 1578
FokI GGATG 6 cut(s) 383, 863, 1161, 1169, 1377, 1715
Fsp4HI GCNGC 7 cut(s) 328, 648, 726, 912, 919, 1283, 1578
FspAI RTGCGCAY 1 cut(s) 1231
FspBI CTAG 3 cut(s) 1248, 1445, 1698
FspI TGCGCA 1 cut(s) 1231
GlaI GCGC 2 cut(s) 686, 1231
GluI GCNGC 7 cut(s) 328, 648, 726, 912, 919, 1283, 1578
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 4 cut(s) 77, 234, 783, 1449
HgaI GACGC 1 cut(s) 1657
HhaI GCGC 2 cut(s) 687, 1232
Hin1I GRCGYC 1 cut(s) 1104
Hin6I GCGC 2 cut(s) 685, 1230
HinP1I GCGC 2 cut(s) 685, 1230
HincII GTYRAC 2 cut(s) 519, 1617
HindII GTYRAC 2 cut(s) 519, 1617
HindIII AAGCTT 2 cut(s) 447, 861
HinfI GANTC 6 cut(s) 436, 442, 667, 1178, 1387, 1694
HphI GGTGA 2 cut(s) 551, 1303
Hpy166II GTNNAC 8 cut(s) 396, 460, 519, 542, 999, 1102, 1163, 1617
Hpy188I TCNGA 3 cut(s) 100, 441, 640
Hpy188III TCNNGA 5 cut(s) 29, 671, 869, 1259, 1486
Hpy8I GTNNAC 8 cut(s) 396, 460, 519, 542, 999, 1102, 1163, 1617
Hpy99I CGWCG 2 cut(s) 266, 1673
HpyAV CCTTC 4 cut(s) 206, 1043, 1237, 1283
HpyCH4III ACNGT 2 cut(s) 258, 523
HpyCH4IV ACGT 3 cut(s) 109, 1104, 1459
HpyF10VI GCNNNNNNNGC 8 cut(s) 155, 187, 611, 1019, 1034, 1253, 1528, 1586
HpyF3I CTNAG 3 cut(s) 273, 1473, 1679
HpySE526I ACGT 3 cut(s) 109, 1104, 1459
Hsp92I GRCGYC 1 cut(s) 1104
HspAI GCGC 2 cut(s) 685, 1230
Ksp22I TGATCA 1 cut(s) 1482
Kzo9I GATC 5 cut(s) 100, 736, 1438, 1482, 1721
LmnI GCTCC 2 cut(s) 413, 428
Lsp1109I GCAGC 7 cut(s) 314, 634, 712, 898, 905, 1269, 1589
LweI GCATC 3 cut(s) 864, 1139, 1410
MabI ACCWGGT 2 cut(s) 453, 1504
MaeI CTAG 3 cut(s) 1248, 1445, 1698
MaeII ACGT 3 cut(s) 109, 1104, 1459
MaeIII GTNAC 2 cut(s) 105, 730
MalI GATC 5 cut(s) 102, 738, 1440, 1484, 1723
MboI GATC 5 cut(s) 100, 736, 1438, 1482, 1721
MboII GAAGA 5 cut(s) 157, 982, 1066, 1427, 1433
MfeI CAATTG 1 cut(s) 1657
MflI RGATCY 1 cut(s) 1721
MhlI GDGCHC 4 cut(s) 121, 303, 714, 1165
MlsI TGGCCA 3 cut(s) 77, 234, 783
MluCI AATT 8 cut(s) 150, 808, 1058, 1074, 1303, 1478, 1657, 1712
MluNI TGGCCA 3 cut(s) 77, 234, 783
MlyI GAGTC 4 cut(s) 436, 1187, 1381, 1688
MmeI TCCRAC 4 cut(s) 153, 277, 1023, 1709
Mox20I TGGCCA 3 cut(s) 77, 234, 783
Mph1103I ATGCAT 5 cut(s) 1154, 1336, 1429, 1433, 1591
MroXI GAANNNNTTC 2 cut(s) 497, 1058
MscI TGGCCA 3 cut(s) 77, 234, 783
MseI TTAA 5 cut(s) 306, 741, 831, 1077, 1499
MslI CAYNNNNRTG 3 cut(s) 369, 380, 655
Msp20I TGGCCA 3 cut(s) 77, 234, 783
MspR9I CCNGG 6 cut(s) 416, 455, 815, 1410, 1506, 1719
MunI CAATTG 1 cut(s) 1657
Mva1269I GAATGC 4 cut(s) 464, 607, 650, 1024
MvaI CCWGG 6 cut(s) 416, 455, 815, 1410, 1506, 1719
MvnI CGCG 2 cut(s) 672, 687
MwoI GCNNNNNNNGC 8 cut(s) 155, 187, 611, 1019, 1034, 1253, 1528, 1586
NcoI CCATGG 2 cut(s) 784, 1063
NdeII GATC 5 cut(s) 100, 736, 1438, 1482, 1721
NlaIV GGNNCC 3 cut(s) 376, 936, 1723
NmeAIII GCCGAG 1 cut(s) 1475
NmuCI GTSAC 1 cut(s) 730
NruI TCGCGA 1 cut(s) 672
NsbI TGCGCA 1 cut(s) 1231
NsiI ATGCAT 5 cut(s) 1154, 1336, 1429, 1433, 1591
NspI RCATGY 9 cut(s) 117, 220, 423, 1135, 1338, 1431, 1495, 1589, 1642
PaeI GCATGC 3 cut(s) 423, 1431, 1589
PaeR7I CTCGAG 1 cut(s) 950
PagI TCATGA 1 cut(s) 868
PciI ACATGT 4 cut(s) 113, 216, 1131, 1638
PctI GAATGC 4 cut(s) 464, 607, 650, 1024
PdmI GAANNNNTTC 2 cut(s) 497, 1058
PfeI GAWTC 2 cut(s) 436, 667
PflFI GACNNNGTC 1 cut(s) 1667
PkrI GCNGC 7 cut(s) 329, 649, 727, 913, 920, 1284, 1579
PleI GAGTC 4 cut(s) 436, 1186, 1381, 1688
PpsI GAGTC 4 cut(s) 436, 1186, 1381, 1688
Ppu21I YACGTR 1 cut(s) 110
PscI ACATGT 4 cut(s) 113, 216, 1131, 1638
Psp6I CCWGG 6 cut(s) 414, 453, 813, 1408, 1504, 1717
PspGI CCWGG 6 cut(s) 414, 453, 813, 1408, 1504, 1717
PspN4I GGNNCC 3 cut(s) 376, 936, 1723
PspPI GGNCC 1 cut(s) 1209
PspXI VCTCGAGB 1 cut(s) 950
PstI CTGCAG 1 cut(s) 1287
PstNI CAGNNNCTG 1 cut(s) 847
PsuI RGATCY 1 cut(s) 1721
PsyI GACNNNGTC 1 cut(s) 1667
RruI TCGCGA 1 cut(s) 672
RsaI GTAC 3 cut(s) 112, 1093, 1373
RsaNI GTAC 3 cut(s) 111, 1092, 1372
RseI CAYNNNNRTG 3 cut(s) 369, 380, 655
SaqAI TTAA 5 cut(s) 306, 741, 831, 1077, 1499
SatI GCNGC 7 cut(s) 328, 648, 726, 912, 919, 1283, 1578
Sau3AI GATC 5 cut(s) 100, 736, 1438, 1482, 1721
Sau96I GGNCC 1 cut(s) 1209
ScaI AGTACT 1 cut(s) 1373
SchI GAGTC 4 cut(s) 436, 1187, 1381, 1688
ScrFI CCNGG 6 cut(s) 416, 455, 815, 1410, 1506, 1719
SduI GDGCHC 4 cut(s) 121, 303, 714, 1165
SexAI ACCWGGT 2 cut(s) 453, 1504
SfaNI GCATC 3 cut(s) 864, 1139, 1410
SfcI CTRYAG 2 cut(s) 1197, 1283
Sfr274I CTCGAG 1 cut(s) 950
SinI GGWCC 1 cut(s) 1209
SlaI CTCGAG 1 cut(s) 950
SmiMI CAYNNNNRTG 3 cut(s) 369, 380, 655
SmlI CTYRAG 4 cut(s) 10, 444, 950, 1259
SmoI CTYRAG 4 cut(s) 10, 444, 950, 1259
SnaBI TACGTA 1 cut(s) 110
SphI GCATGC 3 cut(s) 423, 1431, 1589
Sse9I AATT 8 cut(s) 150, 808, 1058, 1074, 1303, 1478, 1657, 1712
SsiI CCGC 1 cut(s) 791
SspMI CTAG 3 cut(s) 1248, 1445, 1698
StyD4I CCNGG 6 cut(s) 414, 453, 813, 1408, 1504, 1717
StyI CCWWGG 3 cut(s) 784, 1063, 1342
TaaI ACNGT 2 cut(s) 258, 523
TaiI ACGT 3 cut(s) 112, 1107, 1462
TaqI TCGA 5 cut(s) 261, 486, 704, 951, 1181
TasI AATT 8 cut(s) 150, 808, 1058, 1074, 1303, 1478, 1657, 1712
TatI WGTACW 2 cut(s) 1091, 1371
TfiI GAWTC 2 cut(s) 436, 667
Tru1I TTAA 5 cut(s) 306, 741, 831, 1077, 1499
Tru9I TTAA 5 cut(s) 306, 741, 831, 1077, 1499
TscAI CASTG 2 cut(s) 721, 739
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 7 cut(s) 327, 647, 725, 911, 918, 1282, 1577
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 9 cut(s) 143, 351, 457, 680, 749, 857, 885, 983, 1199
TspGWI ACGGA 1 cut(s) 1180
TspRI CASTG 2 cut(s) 721, 739
Tth111I GACNNNGTC 1 cut(s) 1667
VneI GTGCAC 1 cut(s) 1161
VpaK11BI GGWCC 1 cut(s) 1209
XapI RAATTY 2 cut(s) 808, 1058
XceI RCATGY 9 cut(s) 117, 220, 423, 1135, 1338, 1431, 1495, 1589, 1642
XcmI CCANNNNNNNNNTGG 2 cut(s) 70, 1219
XhoI CTCGAG 1 cut(s) 950
XmnI GAANNNNTTC 2 cut(s) 497, 1058
XspI CTAG 3 cut(s) 1248, 1445, 1698
ZraI GACGTC 1 cut(s) 1105
ZrmI AGTACT 1 cut(s) 1373
Zsp2I ATGCAT 5 cut(s) 1154, 1336, 1429, 1433, 1591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.