Rh4DG058100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000124
Physical Location & Seq
Forward (+)
8929756 .. 8931158
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG058100.1

Sequence Viewer

Length: 585 bp
ATGTCGGCAAGTCCGTACGTGCGGGCTGTGTCAGCCACCTCAAGCAGCCCGGGTGAACCCCCATCAAGGCCAGTCAGAAGTTCTAAGGCAGTAGGTGCTGGGGCTTCAAGGGCCGTCACATCTCCATATGCACGTGCCCTTTTCACATACGCAGTACCACAAAATGAGAGATTGGAGTCCGGCCACTGTGTTGAATATGCGGCGGGTCCTTACCTTCTACAGAAGGCCGTCTGCGATGAGGACCTCCTCCTCATCAACTACATCTTCATGGGGGGTAGGAAATGCACGGTGGAGGAAGGAAGAACAATTGTTGCAGCAAGCGGGAATAACAGTGCTCTGCTGTACCGCGATGAAATCTCGTGCTTGGGACCTGACAAATTTGTGACCAACTTTTCGTCGACGTTTGGGGATTGGGTTGAGAACACCCGCACACTCTGCAATCTCGACCGGTTCAATGGTCTGTTGGAGAAGTGCAAGAGGCTGCGCCATCTTGACCATTGCTTTTACTTTGACAAGATGAGGCTGAAAGGTAGCACTGACTTTGGGATGTTCGATCATGTTGTTCCTCACAATGTTCCGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.43

Weight (kDa)

8.46

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 398
AccII CGCG 1 cut(s) 348
AciI CCGC 6 cut(s) 22, 200, 203, 321, 346, 427
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 1 cut(s) 377
AcvI CACGTG 1 cut(s) 134
AfaI GTAC 3 cut(s) 17, 156, 344
AfiI CCNNNNNNNGG 1 cut(s) 66
AgeI ACCGGT 1 cut(s) 447
AgsI TTSAA 3 cut(s) 108, 194, 454
Alw21I GWGCWC 1 cut(s) 337
Ama87I CYCGRG 1 cut(s) 49
AoxI GGCC 4 cut(s) 68, 111, 181, 225
ApeKI GCWGC 3 cut(s) 45, 314, 481
ApoI RAATTY 1 cut(s) 377
ArsI GACNNNNNNTTYG 2 cut(s) 376, 408
AsiGI ACCGGT 1 cut(s) 447
AspLEI GCGC 1 cut(s) 486
AspS9I GGNCC 4 cut(s) 111, 206, 241, 368
AsuC2I CCSGG 2 cut(s) 50, 51
AsuHPI GGTGA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 49
AvaII GGWCC 3 cut(s) 206, 241, 368
BaeGI GKGCMC 1 cut(s) 139
BauI CACGAG 1 cut(s) 358
BbrPI CACGTG 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 3 cut(s) 57, 326, 468
BccI CCATC 2 cut(s) 70, 495
BceAI ACGGC 2 cut(s) 98, 212
BcnI CCSGG 2 cut(s) 50, 51
BfmI CTRYAG 1 cut(s) 218
BisI GCNGC 4 cut(s) 46, 201, 315, 482
BlsI GCNGC 4 cut(s) 47, 202, 316, 483
Bme1390I CCNGG 2 cut(s) 50, 51
Bme18I GGWCC 3 cut(s) 206, 241, 368
BmeT110I CYCGRG 1 cut(s) 49
BmgT120I GGNCC 4 cut(s) 111, 206, 241, 368
BmiI GGNNCC 2 cut(s) 207, 369
BmrFI CCNGG 2 cut(s) 50, 51
BpuEI CTTGAG 1 cut(s) 25
BpuMI CCSGG 2 cut(s) 50, 51
BsaAI YACGTR 2 cut(s) 19, 134
BsaJI CCNNGG 1 cut(s) 49
BsaWI WCCGGW 1 cut(s) 447
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse118I RCCGGY 1 cut(s) 447
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 496
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 552
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 496
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 2 cut(s) 236, 239
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 3 cut(s) 57, 326, 468
BseYI CCCAGC 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 348
Bsh1285I CGRYCG 1 cut(s) 448
BshFI GGCC 4 cut(s) 70, 113, 183, 227
BshTI ACCGGT 1 cut(s) 447
BsiEI CGRYCG 1 cut(s) 448
BsiHKAI GWGCWC 1 cut(s) 337
BsiHKCI CYCGRG 1 cut(s) 49
BsiSI CCGG 3 cut(s) 50, 180, 448
BsiWI CGTACG 1 cut(s) 15
BslFI GGGAC 1 cut(s) 381
BslI CCNNNNNNNGG 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 381
BsnI GGCC 4 cut(s) 70, 113, 183, 227
BsoBI CYCGRG 1 cut(s) 49
Bsp1286I GDGCHC 2 cut(s) 139, 337
Bsp143I GATC 1 cut(s) 553
BspACI CCGC 6 cut(s) 22, 200, 203, 321, 346, 427
BspANI GGCC 4 cut(s) 70, 113, 183, 227
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 207, 369
BsrDI GCAATG 1 cut(s) 496
BsrFI RCCGGY 1 cut(s) 447
BsrI ACTGG 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 447
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 1 cut(s) 553
BssSI CACGAG 1 cut(s) 358
Bst2BI CACGAG 1 cut(s) 358
Bst4CI ACNGT 3 cut(s) 188, 289, 332
BstAPI GCANNNNNTGC 2 cut(s) 95, 435
BstBAI YACGTR 2 cut(s) 19, 134
BstC8I GCNNGC 2 cut(s) 24, 319
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 552
BstFNI CGCG 1 cut(s) 348
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 1 cut(s) 556
BstMBI GATC 1 cut(s) 553
BstMCI CGRYCG 1 cut(s) 448
BstMWI GCNNNNNNNGC 4 cut(s) 32, 95, 110, 435
BstSCI CCNGG 2 cut(s) 48, 49
BstSFI CTRYAG 1 cut(s) 218
BstSLI GKGCMC 1 cut(s) 139
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 3 cut(s) 57, 326, 468
BsuRI GGCC 4 cut(s) 70, 113, 183, 227
BtgZI GCGATG 2 cut(s) 249, 363
BtsCI GGATG 1 cut(s) 552
BtsIMutI CAGTG 3 cut(s) 184, 337, 534
Cac8I GCNNGC 2 cut(s) 24, 319
CfoI GCGC 1 cut(s) 486
Cfr10I RCCGGY 1 cut(s) 447
Cfr13I GGNCC 4 cut(s) 111, 206, 241, 368
Cfr9I CCCGGG 1 cut(s) 49
Csp6I GTAC 3 cut(s) 16, 155, 343
CspAI ACCGGT 1 cut(s) 447
CviAII CATG 2 cut(s) 268, 557
CviQI GTAC 3 cut(s) 16, 155, 343
DdeI CTNAG 1 cut(s) 84
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
EaeI YGGCCR 1 cut(s) 181
Eco47I GGWCC 3 cut(s) 206, 241, 368
Eco72I CACGTG 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 49
EcoO109I RGGNCCY 3 cut(s) 206, 241, 368
FaeI CATG 2 cut(s) 271, 560
FaiI YATR 6 cut(s) 127, 129, 148, 198, 269, 558
FaqI GGGAC 1 cut(s) 381
FatI CATG 2 cut(s) 267, 556
FauI CCCGC 4 cut(s) 15, 196, 314, 434
FauNDI CATATG 1 cut(s) 127
FblI GTMKAC 1 cut(s) 398
Fnu4HI GCNGC 4 cut(s) 46, 201, 315, 482
FokI GGATG 1 cut(s) 559
Fsp4HI GCNGC 4 cut(s) 46, 201, 315, 482
GlaI GCGC 1 cut(s) 485
GluI GCNGC 4 cut(s) 46, 201, 315, 482
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 4 cut(s) 70, 113, 183, 227
HapII CCGG 3 cut(s) 50, 180, 448
HhaI GCGC 1 cut(s) 486
Hin1II CATG 2 cut(s) 271, 560
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HincII GTYRAC 1 cut(s) 399
HindII GTYRAC 1 cut(s) 399
HinfI GANTC 1 cut(s) 176
HpaII CCGG 3 cut(s) 50, 180, 448
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 2 cut(s) 56, 399
Hpy188I TCNGA 2 cut(s) 77, 579
Hpy188III TCNNGA 2 cut(s) 443, 491
Hpy8I GTNNAC 2 cut(s) 56, 399
Hpy99I CGWCG 2 cut(s) 400, 403
HpyAV CCTTC 3 cut(s) 217, 224, 290
HpyCH4III ACNGT 3 cut(s) 188, 289, 332
HpyCH4IV ACGT 3 cut(s) 18, 133, 401
HpyCH4V TGCA 5 cut(s) 131, 285, 314, 438, 474
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 95, 110, 435
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 3 cut(s) 18, 133, 401
Hsp92II CATG 2 cut(s) 271, 560
HspAI GCGC 1 cut(s) 484
Kzo9I GATC 1 cut(s) 553
LpnPI CCDG 6 cut(s) 63, 84, 84, 193, 384, 461
Lsp1109I GCAGC 3 cut(s) 57, 326, 468
MaeII ACGT 3 cut(s) 18, 133, 401
MaeIII GTNAC 2 cut(s) 115, 382
MalI GATC 1 cut(s) 555
MboI GATC 1 cut(s) 553
MboII GAAGA 2 cut(s) 256, 312
MfeI CAATTG 1 cut(s) 306
MhlI GDGCHC 2 cut(s) 139, 337
MluCI AATT 2 cut(s) 306, 377
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 9 cut(s) 49, 232, 254, 257, 260, 286, 471, 513, 576
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 3 cut(s) 50, 180, 448
MspR9I CCNGG 2 cut(s) 50, 51
MunI CAATTG 1 cut(s) 306
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 4 cut(s) 32, 95, 110, 435
NciI CCSGG 2 cut(s) 50, 51
NdeI CATATG 1 cut(s) 127
NdeII GATC 1 cut(s) 553
NlaIII CATG 2 cut(s) 271, 560
NlaIV GGNNCC 2 cut(s) 207, 369
NmuCI GTSAC 2 cut(s) 115, 382
PcsI WCGNNNNNNNCGW 1 cut(s) 11
Pfl23II CGTACG 1 cut(s) 15
PinAI ACCGGT 1 cut(s) 447
PkrI GCNGC 4 cut(s) 47, 202, 316, 483
PleI GAGTC 1 cut(s) 184
PmaCI CACGTG 1 cut(s) 134
PmlI CACGTG 1 cut(s) 134
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 2 cut(s) 19, 134
PpuMI RGGWCCY 3 cut(s) 206, 241, 368
Psp5II RGGWCCY 3 cut(s) 206, 241, 368
PspCI CACGTG 1 cut(s) 134
PspFI CCCAGC 1 cut(s) 98
PspLI CGTACG 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 207, 369
PspPI GGNCC 4 cut(s) 111, 206, 241, 368
PspPPI RGGWCCY 3 cut(s) 206, 241, 368
RsaI GTAC 3 cut(s) 17, 156, 344
RsaNI GTAC 3 cut(s) 16, 155, 343
RseI CAYNNNNRTG 1 cut(s) 266
SalI GTCGAC 1 cut(s) 397
SatI GCNGC 4 cut(s) 46, 201, 315, 482
Sau3AI GATC 1 cut(s) 553
Sau96I GGNCC 4 cut(s) 111, 206, 241, 368
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 2 cut(s) 50, 51
SduI GDGCHC 2 cut(s) 139, 337
SetI ASST 9 cut(s) 21, 41, 97, 136, 216, 246, 373, 404, 532
SfcI CTRYAG 1 cut(s) 218
SgrDI CGTCGACG 1 cut(s) 397
SinI GGWCC 3 cut(s) 206, 241, 368
SmaI CCCGGG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
Sse9I AATT 2 cut(s) 306, 377
SsiI CCGC 6 cut(s) 22, 200, 203, 321, 346, 427
StyD4I CCNGG 2 cut(s) 48, 49
TaaI ACNGT 3 cut(s) 188, 289, 332
TaiI ACGT 3 cut(s) 21, 136, 404
TaqI TCGA 3 cut(s) 398, 444, 552
TasI AATT 2 cut(s) 306, 377
TauI GCSGC 1 cut(s) 203
TscAI CASTG 3 cut(s) 191, 337, 541
TseFI GTSAC 2 cut(s) 115, 382
TseI GCWGC 3 cut(s) 45, 314, 481
Tsp45I GTSAC 2 cut(s) 115, 382
TspDTI ATGAA 2 cut(s) 256, 366
TspMI CCCGGG 1 cut(s) 49
TspRI CASTG 3 cut(s) 191, 337, 541
VpaK11BI GGWCC 3 cut(s) 206, 241, 368
XapI RAATTY 1 cut(s) 377
XmaI CCCGGG 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.