Rh1CG055400

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000124
Physical Location & Seq
Reverse (-)
10812329 .. 10816255
3927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG055400.1

Sequence Viewer

Length: 2640 bp
ATGGTTATTCGGATGGGAGGCCTGGGAGGAAGTGGAAGTAAGACCTTCCGGAGTAACACAGATGTAGAAGTAGATTCAAGGAAGGTCGACGCTAGCAAAGAGGGACTGAAGAGGATGCATGGGAGGGAAAAAGTGGAGTTCGTCTCACTCTCCGACCCCGGGGAGTTTTCATGGATAGTGGGAAGACTTGGGAGGGATAAGGTGGCTGCCATTAACGCAATCGGATATGGGTATATGCAACAAATAGGTTGTCCTGAGCTGATTGGATCCATTTGGAAAATGATGGTTGAGAATGTAGACCTAATGAACTACACGGTAGCAATTCATGGCCATTATTTTCCTCTCACTTCGGACGAGTTTAGCCGAGTCATGGGAATACATGATGGGGGTGAAGAGGTTGAATTGGGGGGATCCATTGAACCAATTGAGTATGGCAGTGTGTGTGAGCTGATGTGCGACAGCGAAGGCAAAATCCAAGTGTCTCTGTTGAAGAAGATTGTCCGTGACCGCCCAGAAGTAGACGACACATTTAGGATTGCATATGCATTGTTGGCGCACACTGCATTGCTGACTCCGGGCACCAGTGATGTGGTGGATAAATCCCTCTTGATTGCACTAATAGAGACGAGGCATGTGGTGAGGAAAAACTGGGCTTCATTATGTTTGAACCGGCTTATGGAGTCTATCATGGTTCAGAGGGAAGAAGGGAACCCCGTGGTGGGGGGATGTGTGTTGTTTCTCCAAGTCCTATACCTTGATAAGGTAGGAGAGGCATGCATGAGACTAGATAGAAAGATACTCCCATTAATGCTCTGGGGAAAGAGTGAGGTCCAGCAGCTTCTGAAAAAAGTAACAAAAGTTGGAGGACATAAAAGTCCGACTGTCATGATCAATACTGCCAAGCGTAGCAAGAAAATGATGTCAACCAATAATAGGGACGGCACCGTGGGGCTGGGATTAGATAGATCAGTTCATGAAGACATCTACGAGGTCAAGGTGGACCTTGGTCATGTGGTTTCTGACTTGGGGTGGCTTAGGGACATCGTTGGCAGGCTTCACCCTGAGTTCAATGAACTCATTAACAAGGTTGAGAGATTAATACAGTCCGTGACCAACATTAAGGAGGAGTGTGTGAGAGAGGTCATAGAGGAAATGAGGAAAATGGGGGAGTACATGGGGGATCAAGTGGTACCAGAAAGTAACACATCTGACATTGATAGAACTGCAAAAAGAATGGACCCAAAGGCATGGACGGAGAACAAGGCAACCCAAAATCATCTGGGAAGGGCAAGGTTGGGGTCCTTCAAACTGCCACCAACATTGAGTAATCGTACTACAAATGGAATGCCAAAGGGAAGTCCAGAGAAGTGCAATGAGGGAAATTGTTCCCCGGTCGTCTCTGCAAGTTCTAGCGGCTCGACATGGCCTCCTATAAGAGCAAGTAGAACAGCGAACATACATGTGGACTGTGGAGTAAAAGGTGTAACCAAGGGTCTTGCTAGAGCTCTATTCCCATCTGCAGTAAACGAAGATGAAGCCATGCATTACTTAACGGGATTGGTCGATTGTGACCCACAATCGCCTTGGGAGGTAGAGAGGTATCATGTTGGTCCTTACCACCTGAAGAAGCCGTTGGAGGGAGATGAAATGAGGTTGATAAATTTCATTTTCATGGCCGGTAAGGATTTGTCAAGAGAGGAAAAAAGGACCCTGGTGGCTGCGTTTGGGAATGACAGAGCTCTCTTGTATCGGGATGAAATTATTTGTCTTCAGCCACGAACATATGTTAATACACCGGTCATTAACTATGTGAGTGAATATATGAATTGCGAAGGTTCTAATAGTTGGTACTTCCCGACATTCTTTGAGAAAAAGGCAAGTGCATATGACCCTACAGAGACATTTCAAGACTGGGTTGAGAATACAAGAAGTGTATGCAATCTTGATAGATTTAATGGACAACTCCACAATTGTGAGAAGATATTTGTGCCGTTGCATGAGGAAGGAGATGGAGGACATTGGTATCTTATGGTGGTTCTTGTTAGGGAAAAAGTTGCTGAGATATGGGATAGCTATCCCTCTGTGGAGAAAGAAGCCAACAGATGGGGACATGCAATAACGACGCTCCGACACTTGGACCATGTATTGTCTCTTGAGACAGTCAAATACAAAGGTGCTACAATTTCATTTGGTACATTCGATATCATCGTTCCTGAAGGGGTTCCTCTCCAAAAGAATGGATATGATTGCGGAATATATGTCATTCAAAATATGCTCCAATATGGGAAAAAATGGGCTGAAGAGTATGAATCACATGAGGAGAGGGCAATGGTTCTGTTAGATTGCATGAGATTCTCTCACAATGACATGCACAGCCTTATACCTGAAGGCAACATGGGAAGTGGTTATGGTGTTGAACATGACAAAGAGGAGGTTTGTGAAAAGGGAAAACTCAATAAAACCAAGCCATTTTCAGCATGGGATGCATCTGATTTCTGCGACTTACCAACCTTGGTTGATATATTTGGAATGTATGGTGATGGGGGACCTAGTGGAGGAAGCAAGATGGGTTTAGTTGTTGATGATGTAGGAGGTGAGTTGGGAGAAATCTCAGTTTTAAAATCTCCCAAGTCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

879

Amino Acids

98.4

Weight (kDa)

5.71

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 613 - 758 8.8e-15 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 873
Acc65I GGTACC 1 cut(s) 1189
AccB1I GGYRCC 3 cut(s) 578, 941, 1189
AccB7I CCANNNNNTGG 1 cut(s) 2103
AccI GTMKAC 3 cut(s) 87, 297, 519
AccIII TCCGGA 1 cut(s) 48
AciI CCGC 3 cut(s) 508, 1413, 2250
AclWI GGATC 5 cut(s) 261, 274, 405, 418, 1188
AcoI YGGCCR 2 cut(s) 328, 1674
AcsI RAATTY 1 cut(s) 1660
AcuI CTGAAG 6 cut(s) 128, 1643, 1754, 2235, 2319, 2406
AfaI GTAC 5 cut(s) 1172, 1191, 1333, 1850, 2194
AflIII ACRYGT 1 cut(s) 1459
AgeI ACCGGT 1 cut(s) 1795
AjnI CCWGG 2 cut(s) 21, 1710
AjuI GAANNNNNNNTTGG 2 cut(s) 1616, 1648
AleI CACNNNNGTG 1 cut(s) 1971
AluBI AGCT 6 cut(s) 259, 448, 838, 1505, 1739, 2073
AluI AGCT 6 cut(s) 259, 448, 838, 1505, 1739, 2073
Alw21I GWGCWC 2 cut(s) 1507, 1741
Alw26I GTCTC 8 cut(s) 148, 486, 617, 775, 1402, 1892, 2150, 2154
AlwI GGATC 5 cut(s) 261, 274, 405, 418, 1188
AlwNI CAGNNNCTG 1 cut(s) 841
Ama87I CYCGRG 1 cut(s) 158
Aor13HI TCCGGA 1 cut(s) 48
AoxI GGCC 4 cut(s) 19, 328, 1424, 1674
ApeKI GCWGC 3 cut(s) 206, 835, 1718
ApoI RAATTY 1 cut(s) 1660
ArsI GACNNNNNNTTYG 2 cut(s) 235, 267
AseI ATTAAT 2 cut(s) 806, 1097
AsiGI ACCGGT 1 cut(s) 1795
Asp700I GAANNNNTTC 2 cut(s) 1384, 2220
Asp718I GGTACC 1 cut(s) 1189
AspLEI GCGC 1 cut(s) 556
AspS9I GGNCC 8 cut(s) 829, 1000, 1237, 1299, 1610, 1707, 2137, 2546
AsuC2I CCSGG 4 cut(s) 159, 160, 576, 1391
AsuHPI GGTGA 5 cut(s) 401, 649, 1049, 2549, 2606
AsuNHI GCTAGC 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 8 cut(s) 829, 1000, 1237, 1299, 1610, 1707, 2137, 2546
BaeGI GKGCMC 1 cut(s) 581
BaeI ACNNNNGTAYC 2 cut(s) 2006, 2039
BalI TGGCCA 1 cut(s) 330
BamHI GGATCC 2 cut(s) 266, 410
BanI GGYRCC 3 cut(s) 578, 941, 1189
BanII GRGCYC 2 cut(s) 1507, 1741
BbsI GAAGAC 3 cut(s) 190, 984, 1760
Bbv12I GWGCWC 2 cut(s) 1507, 1741
BbvI GCAGC 3 cut(s) 193, 847, 1705
BccI CCATC 8 cut(s) 7, 277, 377, 1522, 2003, 2097, 2534, 2560
BceAI ACGGC 3 cut(s) 955, 1615, 1975
BciT130I CCWGG 2 cut(s) 23, 1712
BclI TGATCA 1 cut(s) 888
BcnI CCSGG 4 cut(s) 159, 160, 576, 1391
BcoDI GTCTC 8 cut(s) 148, 486, 617, 775, 1402, 1892, 2150, 2154
BfaI CTAG 5 cut(s) 93, 785, 1410, 1500, 2550
BfmI CTRYAG 2 cut(s) 1518, 1893
BisI GCNGC 4 cut(s) 207, 836, 1414, 1719
BlsI GCNGC 4 cut(s) 208, 837, 1415, 1720
Bme1390I CCNGG 6 cut(s) 23, 159, 160, 576, 1391, 1712
Bme18I GGWCC 8 cut(s) 829, 1000, 1237, 1299, 1610, 1707, 2137, 2546
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 8 cut(s) 829, 1000, 1237, 1299, 1610, 1707, 2137, 2546
BmrFI CCNGG 6 cut(s) 23, 159, 160, 576, 1391, 1712
BmrI ACTGGG 2 cut(s) 658, 1921
BmsI GCATC 3 cut(s) 105, 2473, 2495
BmtI GCTAGC 1 cut(s) 96
BmuI ACTGGG 2 cut(s) 658, 1921
BoxI GACNNNNGTC 1 cut(s) 1005
BpiI GAAGAC 3 cut(s) 190, 984, 1760
BplI GAGNNNNNCTC 4 cut(s) 128, 160, 2341, 2373
Bpu10I CCTNAGC 2 cut(s) 255, 1034
BpuEI CTTGAG 1 cut(s) 2174
BpuMI CCSGG 4 cut(s) 159, 160, 576, 1391
BsaBI GATNNNNATC 1 cut(s) 2073
BsaWI WCCGGW 2 cut(s) 48, 1795
BsaXI ACNNNNNCTCC 2 cut(s) 1411, 1441
Bse118I RCCGGY 3 cut(s) 669, 1676, 1795
Bse1I ACTGG 3 cut(s) 582, 653, 1916
Bse3DI GCAATG 3 cut(s) 563, 1378, 2334
Bse8I GATNNNNATC 1 cut(s) 2073
BseAI TCCGGA 1 cut(s) 48
BseBI CCWGG 2 cut(s) 23, 1712
BseGI GGATG 5 cut(s) 18, 120, 731, 1759, 2488
BseJI GATNNNNATC 1 cut(s) 2073
BseMI GCAATG 3 cut(s) 563, 1378, 2334
BseMII CTCAG 4 cut(s) 246, 1053, 2049, 2625
BseNI ACTGG 3 cut(s) 582, 653, 1916
BseRI GAGGAG 3 cut(s) 1139, 2333, 2444
BseSI GKGCMC 1 cut(s) 581
BseXI GCAGC 3 cut(s) 193, 847, 1705
BseYI CCCAGC 1 cut(s) 952
Bsh1285I CGRYCG 1 cut(s) 1395
BshFI GGCC 4 cut(s) 21, 330, 1426, 1676
BshNI GGYRCC 3 cut(s) 578, 941, 1189
BshTI ACCGGT 1 cut(s) 1795
BsiEI CGRYCG 1 cut(s) 1395
BsiHKAI GWGCWC 2 cut(s) 1507, 1741
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 7 cut(s) 49, 159, 575, 670, 1391, 1677, 1796
BslFI GGGAC 5 cut(s) 117, 950, 1052, 2121, 2559
BsmAI GTCTC 8 cut(s) 148, 486, 617, 775, 1402, 1892, 2150, 2154
BsmBI CGTCTC 3 cut(s) 148, 617, 1402
BsmFI GGGAC 5 cut(s) 117, 950, 1052, 2121, 2559
BsmI GAATGC 1 cut(s) 1350
BsnI GGCC 4 cut(s) 21, 330, 1426, 1676
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 3 cut(s) 581, 1507, 1741
Bsp13I TCCGGA 1 cut(s) 48
Bsp143I GATC 5 cut(s) 266, 410, 888, 965, 1180
BspACI CCGC 3 cut(s) 508, 1413, 2250
BspANI GGCC 4 cut(s) 21, 330, 1426, 1676
BspCNI CTCAG 4 cut(s) 247, 1054, 2050, 2624
BspEI TCCGGA 1 cut(s) 48
BspHI TCATGA 2 cut(s) 885, 973
BspMAI CTGCAG 1 cut(s) 1522
BspOI GCTAGC 1 cut(s) 96
BspPI GGATC 5 cut(s) 261, 274, 405, 418, 1188
BspT107I GGYRCC 3 cut(s) 578, 941, 1189
BsrDI GCAATG 3 cut(s) 563, 1378, 2334
BsrFI RCCGGY 3 cut(s) 669, 1676, 1795
BsrI ACTGG 3 cut(s) 582, 653, 1916
BssAI RCCGGY 3 cut(s) 669, 1676, 1795
BssMI GATC 5 cut(s) 266, 410, 888, 965, 1180
BssT1I CCWWGG 4 cut(s) 1003, 1488, 1583, 2511
Bst2UI CCWGG 2 cut(s) 23, 1712
Bst4CI ACNGT 6 cut(s) 316, 883, 946, 1104, 1469, 2161
Bst6I CTCTTC 3 cut(s) 104, 387, 2295
BstAPI GCANNNNNTGC 1 cut(s) 2483
BstC8I GCNNGC 3 cut(s) 94, 775, 1052
BstDEI CTNAG 5 cut(s) 255, 1034, 1062, 2058, 2611
BstDSI CCRYGG 2 cut(s) 714, 945
BstENI CCTNNNNNAGG 2 cut(s) 758, 2553
BstF5I GGATG 5 cut(s) 18, 120, 731, 1759, 2488
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 5 cut(s) 269, 413, 891, 968, 1183
BstMAI GTCTC 8 cut(s) 148, 486, 617, 775, 1402, 1892, 2150, 2154
BstMBI GATC 5 cut(s) 266, 410, 888, 965, 1180
BstMCI CGRYCG 1 cut(s) 1395
BstMWI GCNNNNNNNGC 4 cut(s) 215, 551, 560, 2483
BstNI CCWGG 2 cut(s) 23, 1712
BstNSI RCATGY 5 cut(s) 635, 777, 1463, 2114, 2371
BstPAI GACNNNNGTC 1 cut(s) 1005
BstSCI CCNGG 6 cut(s) 21, 157, 158, 574, 1389, 1710
BstSFI CTRYAG 2 cut(s) 1518, 1893
BstSLI GKGCMC 1 cut(s) 581
BstV1I GCAGC 3 cut(s) 193, 847, 1705
BstV2I GAAGAC 3 cut(s) 190, 984, 1760
BstX2I RGATCY 2 cut(s) 266, 410
BstXI CCANNNNNNTGG 3 cut(s) 589, 1248, 2237
BstYI RGATCY 2 cut(s) 266, 410
BsuRI GGCC 4 cut(s) 21, 330, 1426, 1676
BtgI CCRYGG 2 cut(s) 714, 945
BtsCI GGATG 5 cut(s) 18, 120, 731, 1759, 2488
BtsI GCAGTG 2 cut(s) 442, 558
BtsIMutI CAGTG 3 cut(s) 442, 558, 589
Cac8I GCNNGC 3 cut(s) 94, 775, 1052
CaiI CAGNNNCTG 1 cut(s) 841
CciI TCATGA 2 cut(s) 885, 973
CfoI GCGC 1 cut(s) 556
Cfr10I RCCGGY 3 cut(s) 669, 1676, 1795
Cfr13I GGNCC 8 cut(s) 829, 1000, 1237, 1299, 1610, 1707, 2137, 2546
Cfr9I CCCGGG 1 cut(s) 158
CseI GACGC 2 cut(s) 98, 2131
Csp6I GTAC 5 cut(s) 1171, 1190, 1332, 1849, 2193
CspAI ACCGGT 1 cut(s) 1795
CspCI CAANNNNNGTGG 2 cut(s) 1302, 1337
CviQI GTAC 5 cut(s) 1171, 1190, 1332, 1849, 2193
DdeI CTNAG 5 cut(s) 255, 1034, 1062, 2058, 2611
DpnI GATC 5 cut(s) 268, 412, 890, 967, 1182
DpnII GATC 5 cut(s) 266, 410, 888, 965, 1180
DraI TTTAAA 1 cut(s) 2619
DrdI GACNNNNNNGTC 1 cut(s) 873
DseDI GACNNNNNNGTC 1 cut(s) 873
EaeI YGGCCR 2 cut(s) 328, 1674
Eam1104I CTCTTC 3 cut(s) 104, 387, 2295
EarI CTCTTC 3 cut(s) 104, 387, 2295
Ecl136II GAGCTC 2 cut(s) 1505, 1739
Eco130I CCWWGG 4 cut(s) 1003, 1488, 1583, 2511
Eco147I AGGCCT 1 cut(s) 21
Eco24I GRGCYC 2 cut(s) 1507, 1741
Eco32I GATATC 1 cut(s) 2203
Eco47I GGWCC 8 cut(s) 829, 1000, 1237, 1299, 1610, 1707, 2137, 2546
Eco53kI GAGCTC 2 cut(s) 1505, 1739
Eco57I CTGAAG 6 cut(s) 128, 1643, 1754, 2235, 2319, 2406
Eco88I CYCGRG 1 cut(s) 158
EcoICRI GAGCTC 2 cut(s) 1505, 1739
EcoNI CCTNNNNNAGG 2 cut(s) 758, 2553
EcoO109I RGGNCCY 3 cut(s) 1299, 1707, 2546
EcoRII CCWGG 2 cut(s) 21, 1710
EcoRV GATATC 1 cut(s) 2203
EcoT14I CCWWGG 4 cut(s) 1003, 1488, 1583, 2511
EcoT22I ATGCAT 5 cut(s) 120, 547, 779, 1545, 2488
EcoT38I GRGCYC 2 cut(s) 1507, 1741
ErhI CCWWGG 4 cut(s) 1003, 1488, 1583, 2511
Esp3I CGTCTC 3 cut(s) 148, 617, 1402
FaqI GGGAC 5 cut(s) 117, 950, 1052, 2121, 2559
FauNDI CATATG 3 cut(s) 541, 1783, 1885
FbaI TGATCA 1 cut(s) 888
FblI GTMKAC 3 cut(s) 87, 297, 519
Fnu4HI GCNGC 4 cut(s) 207, 836, 1414, 1719
FokI GGATG 5 cut(s) 25, 127, 738, 1766, 2495
FriOI GRGCYC 2 cut(s) 1507, 1741
Fsp4HI GCNGC 4 cut(s) 207, 836, 1414, 1719
FspBI CTAG 5 cut(s) 93, 785, 1410, 1500, 2550
GlaI GCGC 1 cut(s) 555
GluI GCNGC 4 cut(s) 207, 836, 1414, 1719
GsaI CCCAGC 1 cut(s) 956
HaeIII GGCC 4 cut(s) 21, 330, 1426, 1676
HapII CCGG 7 cut(s) 49, 159, 575, 670, 1391, 1677, 1796
HgaI GACGC 2 cut(s) 98, 2131
HhaI GCGC 1 cut(s) 556
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HincII GTYRAC 2 cut(s) 88, 924
HindII GTYRAC 2 cut(s) 88, 924
HinfI GANTC 6 cut(s) 74, 366, 571, 680, 2309, 2352
HpaII CCGG 7 cut(s) 49, 159, 575, 670, 1391, 1677, 1796
HphI GGTGA 5 cut(s) 401, 649, 1049, 2549, 2606
Hpy166II GTNNAC 7 cut(s) 88, 298, 520, 924, 1000, 1465, 1525
Hpy8I GTNNAC 7 cut(s) 88, 298, 520, 924, 1000, 1465, 1525
Hpy99I CGWCG 2 cut(s) 92, 2125
HpyCH4III ACNGT 6 cut(s) 316, 883, 946, 1104, 1469, 2161
HpyF10VI GCNNNNNNNGC 4 cut(s) 215, 551, 560, 2483
HpyF3I CTNAG 5 cut(s) 255, 1034, 1062, 2058, 2611
HspAI GCGC 1 cut(s) 554
Kpn2I TCCGGA 1 cut(s) 48
KpnI GGTACC 1 cut(s) 1193
Ksp22I TGATCA 1 cut(s) 888
Kzo9I GATC 5 cut(s) 266, 410, 888, 965, 1180
LmnI GCTCC 2 cut(s) 2130, 2280
Lsp1109I GCAGC 3 cut(s) 193, 847, 1705
LweI GCATC 3 cut(s) 105, 2473, 2495
MaeI CTAG 5 cut(s) 93, 785, 1410, 1500, 2550
MaeIII GTNAC 7 cut(s) 53, 503, 850, 1108, 1199, 1483, 1568
MalI GATC 5 cut(s) 268, 412, 890, 967, 1182
MboI GATC 5 cut(s) 266, 410, 888, 965, 1180
MfeI CAATTG 2 cut(s) 423, 1969
MflI RGATCY 2 cut(s) 266, 410
MhlI GDGCHC 3 cut(s) 581, 1507, 1741
MlsI TGGCCA 1 cut(s) 330
MluNI TGGCCA 1 cut(s) 330
MlyI GAGTC 3 cut(s) 375, 565, 689
MmeI TCCRAC 5 cut(s) 177, 841, 902, 1614, 2152
Mox20I TGGCCA 1 cut(s) 330
Mph1103I ATGCAT 5 cut(s) 120, 547, 779, 1545, 2488
MroI TCCGGA 1 cut(s) 48
MroXI GAANNNNTTC 2 cut(s) 1384, 2220
MscI TGGCCA 1 cut(s) 330
MslI CAYNNNNRTG 3 cut(s) 1460, 1670, 1971
Msp20I TGGCCA 1 cut(s) 330
MspI CCGG 7 cut(s) 49, 159, 575, 670, 1391, 1677, 1796
MspR9I CCNGG 6 cut(s) 23, 159, 160, 576, 1391, 1712
MunI CAATTG 2 cut(s) 423, 1969
Mva1269I GAATGC 1 cut(s) 1350
MvaI CCWGG 2 cut(s) 23, 1712
MwoI GCNNNNNNNGC 4 cut(s) 215, 551, 560, 2483
NciI CCSGG 4 cut(s) 159, 160, 576, 1391
NdeI CATATG 3 cut(s) 541, 1783, 1885
NdeII GATC 5 cut(s) 266, 410, 888, 965, 1180
NheI GCTAGC 1 cut(s) 92
NmeAIII GCCGAG 1 cut(s) 389
NmuCI GTSAC 3 cut(s) 503, 1108, 1568
NsiI ATGCAT 5 cut(s) 120, 547, 779, 1545, 2488
NspI RCATGY 5 cut(s) 635, 777, 1463, 2114, 2371
OliI CACNNNNGTG 1 cut(s) 1971
PaeI GCATGC 1 cut(s) 777
PagI TCATGA 2 cut(s) 885, 973
PceI AGGCCT 1 cut(s) 21
PciI ACATGT 1 cut(s) 1459
PcsI WCGNNNNNNNCGW 1 cut(s) 2205
PctI GAATGC 1 cut(s) 1350
PdmI GAANNNNTTC 2 cut(s) 1384, 2220
PfeI GAWTC 3 cut(s) 74, 2309, 2352
PflMI CCANNNNNTGG 1 cut(s) 2103
PinAI ACCGGT 1 cut(s) 1795
PkrI GCNGC 4 cut(s) 208, 837, 1415, 1720
PleI GAGTC 3 cut(s) 374, 565, 688
PpsI GAGTC 3 cut(s) 374, 565, 688
PpuMI RGGWCCY 3 cut(s) 1299, 1707, 2546
PscI ACATGT 1 cut(s) 1459
PshAI GACNNNNGTC 1 cut(s) 1005
PshBI ATTAAT 2 cut(s) 806, 1097
Psp124BI GAGCTC 2 cut(s) 1507, 1741
Psp5II RGGWCCY 3 cut(s) 1299, 1707, 2546
Psp6I CCWGG 2 cut(s) 21, 1710
PspFI CCCAGC 1 cut(s) 952
PspGI CCWGG 2 cut(s) 21, 1710
PspPI GGNCC 8 cut(s) 829, 1000, 1237, 1299, 1610, 1707, 2137, 2546
PspPPI RGGWCCY 3 cut(s) 1299, 1707, 2546
PstI CTGCAG 1 cut(s) 1522
PstNI CAGNNNCTG 1 cut(s) 841
PsuI RGATCY 2 cut(s) 266, 410
RsaI GTAC 5 cut(s) 1172, 1191, 1333, 1850, 2194
RsaNI GTAC 5 cut(s) 1171, 1190, 1332, 1849, 2193
RseI CAYNNNNRTG 3 cut(s) 1460, 1670, 1971
SacI GAGCTC 2 cut(s) 1507, 1741
SalI GTCGAC 1 cut(s) 86
SatI GCNGC 4 cut(s) 207, 836, 1414, 1719
Sau3AI GATC 5 cut(s) 266, 410, 888, 965, 1180
Sau96I GGNCC 8 cut(s) 829, 1000, 1237, 1299, 1610, 1707, 2137, 2546
SchI GAGTC 3 cut(s) 375, 565, 689
ScrFI CCNGG 6 cut(s) 23, 159, 160, 576, 1391, 1712
SduI GDGCHC 3 cut(s) 581, 1507, 1741
SfaNI GCATC 3 cut(s) 105, 2473, 2495
SfcI CTRYAG 2 cut(s) 1518, 1893
SinI GGWCC 8 cut(s) 829, 1000, 1237, 1299, 1610, 1707, 2137, 2546
SmaI CCCGGG 1 cut(s) 160
SmiMI CAYNNNNRTG 3 cut(s) 1460, 1670, 1971
SmlI CTYRAG 1 cut(s) 2153
SmoI CTYRAG 1 cut(s) 2153
SphI GCATGC 1 cut(s) 777
SseBI AGGCCT 1 cut(s) 21
SsiI CCGC 3 cut(s) 508, 1413, 2250
SspMI CTAG 5 cut(s) 93, 785, 1410, 1500, 2550
SstI GAGCTC 2 cut(s) 1507, 1741
StuI AGGCCT 1 cut(s) 21
StyD4I CCNGG 6 cut(s) 21, 157, 158, 574, 1389, 1710
StyI CCWWGG 4 cut(s) 1003, 1488, 1583, 2511
TaaI ACNGT 6 cut(s) 316, 883, 946, 1104, 1469, 2161
TaqI TCGA 4 cut(s) 87, 1418, 1563, 2199
TatI WGTACW 1 cut(s) 1170
TauI GCSGC 1 cut(s) 1416
TfiI GAWTC 3 cut(s) 74, 2309, 2352
TscAI CASTG 3 cut(s) 442, 565, 589
TseFI GTSAC 3 cut(s) 503, 1108, 1568
TseI GCWGC 3 cut(s) 206, 835, 1718
Tsp45I GTSAC 3 cut(s) 503, 1108, 1568
TspGWI ACGGA 3 cut(s) 491, 1096, 1268
TspMI CCCGGG 1 cut(s) 158
TspRI CASTG 3 cut(s) 442, 565, 589
Van91I CCANNNNNTGG 1 cut(s) 2103
VpaK11BI GGWCC 8 cut(s) 829, 1000, 1237, 1299, 1610, 1707, 2137, 2546
VspI ATTAAT 2 cut(s) 806, 1097
XagI CCTNNNNNAGG 2 cut(s) 758, 2553
XapI RAATTY 1 cut(s) 1660
XceI RCATGY 5 cut(s) 635, 777, 1463, 2114, 2371
XcmI CCANNNNNNNNNTGG 4 cut(s) 589, 810, 1581, 2475
XmaI CCCGGG 1 cut(s) 158
XmiI GTMKAC 3 cut(s) 87, 297, 519
XmnI GAANNNNTTC 2 cut(s) 1384, 2220
XspI CTAG 5 cut(s) 93, 785, 1410, 1500, 2550
Zsp2I ATGCAT 5 cut(s) 120, 547, 779, 1545, 2488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.