Rmu_co8240443.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8240443.1
OG0000124
Physical Location & Seq
Reverse (-)
2 .. 759
758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8240443.1_g000001.1.cds

Sequence Viewer

Length: 521 bp
atgaattcggtcatctgtttacgatctatacggatttgtattcctgtccttgtagaaaattcctccggcgtttatggagaggcacatgaggtactttaccgggatgcggatcgagctgcgtttgtccggactgaggcgggttccgtaccgcatctgcctgacagcacaaggggatcaccggtggatgcacggaagttggaaccccaaaaccccccagtgcccttccactccttcgtctccgacgtctgggtcgaggatgtcactgtgataagtcccgccatcccaaggggtcgcctatacgctgccatccgcaatgatggcggtccaggaatgtgtctcttaaggtgggagtcaagggaggggatgatattctggcatgttgagctgactagaggcgtaggttgcatgacttttggtgaagggtggaacagatttgcatcacacaatcggctgcttgatggaaagcggttttgtgtcttcacttacaggggtggccttgagttctccgtccttgttttcca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.37

Weight (kDa)

6.95

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AatII GACGTC 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 126
AciI CCGC 7 cut(s) 107, 137, 149, 276, 310, 321, 466
AclWI GGATC 2 cut(s) 117, 181
AcsI RAATTY 2 cut(s) 4, 58
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 2 cut(s) 93, 147
AfiI CCNNNNNNNGG 4 cut(s) 106, 133, 246, 285
AflII CTTAAG 1 cut(s) 340
AgeI ACCGGT 1 cut(s) 178
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 2 cut(s) 116, 385
AluI AGCT 2 cut(s) 116, 385
Alw26I GTCTC 2 cut(s) 241, 341
AlwI GGATC 2 cut(s) 117, 181
Aor13HI TCCGGA 1 cut(s) 126
AoxI GGCC 1 cut(s) 493
ApeKI GCWGC 3 cut(s) 116, 302, 451
ApoI RAATTY 2 cut(s) 4, 58
AsiGI ACCGGT 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 323
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 168, 428
AvaII GGWCC 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 469
BbvI GCAGC 3 cut(s) 103, 289, 438
BccI CCATC 4 cut(s) 287, 311, 314, 452
BciT130I CCWGG 1 cut(s) 327
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 2 cut(s) 241, 341
BfaI CTAG 1 cut(s) 390
BfrI CTTAAG 1 cut(s) 340
BisI GCNGC 3 cut(s) 117, 303, 452
BlsI GCNGC 3 cut(s) 118, 304, 453
Bme1390I CCNGG 2 cut(s) 101, 327
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 2 cut(s) 142, 201
BmrFI CCNGG 2 cut(s) 101, 327
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 4 cut(s) 94, 160, 175, 446
BmuI ACTGGG 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 469
BpuEI CTTGAG 1 cut(s) 518
BpuMI CCSGG 1 cut(s) 101
BsaBI GATNNNNATC 2 cut(s) 108, 436
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 284
BsaWI WCCGGW 2 cut(s) 126, 178
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 133, 246, 285
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 319
Bse8I GATNNNNATC 2 cut(s) 108, 436
BseAI TCCGGA 1 cut(s) 126
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 6 cut(s) 109, 190, 262, 279, 306, 369
BseJI GATNNNNATC 2 cut(s) 108, 436
BseLI CCNNNNNNNGG 4 cut(s) 106, 133, 246, 285
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 3 cut(s) 103, 289, 438
BshFI GGCC 1 cut(s) 495
BshTI ACCGGT 1 cut(s) 178
BsiSI CCGG 4 cut(s) 66, 100, 127, 179
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 4 cut(s) 106, 133, 246, 285
BsmAI GTCTC 2 cut(s) 241, 341
BsmBI CGTCTC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 258
BsnI GGCC 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 222
Bsp13I TCCGGA 1 cut(s) 126
Bsp143I GATC 3 cut(s) 23, 109, 173
BspACI CCGC 7 cut(s) 107, 137, 149, 276, 310, 321, 466
BspANI GGCC 1 cut(s) 495
BspCNI CTCAG 1 cut(s) 124
BspEI TCCGGA 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 142, 201
BspPI GGATC 2 cut(s) 117, 181
BspTI CTTAAG 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 3 cut(s) 23, 109, 173
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 265
BstACI GRCGYC 1 cut(s) 243
BstAFI CTTAAG 1 cut(s) 340
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 6 cut(s) 109, 190, 262, 279, 306, 369
BstKTI GATC 3 cut(s) 26, 112, 176
BstMAI GTCTC 2 cut(s) 241, 341
BstMBI GATC 3 cut(s) 23, 109, 173
BstMWI GCNNNNNNNGC 4 cut(s) 113, 318, 382, 402
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 99, 325
BstSLI GKGCMC 1 cut(s) 222
BstV1I GCAGC 3 cut(s) 103, 289, 438
BstV2I GAAGAC 1 cut(s) 469
BsuRI GGCC 1 cut(s) 495
BtsCI GGATG 6 cut(s) 109, 190, 262, 279, 306, 369
BtsIMutI CAGTG 2 cut(s) 222, 261
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 323
Csp6I GTAC 2 cut(s) 92, 146
CspAI ACCGGT 1 cut(s) 178
CviAII CATG 3 cut(s) 86, 377, 406
CviJI RGCY 4 cut(s) 116, 385, 451, 495
CviKI_1 RGCY 4 cut(s) 116, 385, 451, 495
CviQI GTAC 2 cut(s) 92, 146
DdeI CTNAG 1 cut(s) 132
DpnI GATC 3 cut(s) 25, 111, 175
DpnII GATC 3 cut(s) 23, 109, 173
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
Esp3I CGTCTC 1 cut(s) 241
FaeI CATG 3 cut(s) 89, 380, 409
FaiI YATR 6 cut(s) 29, 75, 87, 298, 378, 407
FaqI GGGAC 1 cut(s) 258
FatI CATG 3 cut(s) 85, 376, 405
FauI CCCGC 2 cut(s) 130, 283
Fnu4HI GCNGC 3 cut(s) 117, 303, 452
FokI GGATG 6 cut(s) 116, 197, 266, 269, 293, 376
Fsp4HI GCNGC 3 cut(s) 117, 303, 452
FspBI CTAG 1 cut(s) 390
GluI GCNGC 3 cut(s) 117, 303, 452
HaeIII GGCC 1 cut(s) 495
HapII CCGG 4 cut(s) 66, 100, 127, 179
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 3 cut(s) 89, 380, 409
HinfI GANTC 1 cut(s) 350
HpaII CCGG 4 cut(s) 66, 100, 127, 179
HphI GGTGA 2 cut(s) 168, 428
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 20
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 3 cut(s) 232, 241, 413
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 3 cut(s) 188, 405, 437
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 318, 382, 402
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 3 cut(s) 89, 380, 409
Kpn2I TCCGGA 1 cut(s) 126
Kzo9I GATC 3 cut(s) 23, 109, 173
Lsp1109I GCAGC 3 cut(s) 103, 289, 438
LweI GCATC 4 cut(s) 94, 160, 175, 446
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 259
MalI GATC 3 cut(s) 25, 111, 175
MboI GATC 3 cut(s) 23, 109, 173
MboII GAAGA 1 cut(s) 469
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 2 cut(s) 4, 58
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 2 cut(s) 177, 264
MnlI CCTC 7 cut(s) 73, 73, 82, 127, 247, 352, 386
MroI TCCGGA 1 cut(s) 126
MseI TTAA 1 cut(s) 341
MspCI CTTAAG 1 cut(s) 340
MspI CCGG 4 cut(s) 66, 100, 127, 179
MspR9I CCNGG 2 cut(s) 101, 327
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 4 cut(s) 113, 318, 382, 402
NciI CCSGG 1 cut(s) 101
NdeII GATC 3 cut(s) 23, 109, 173
NlaIII CATG 3 cut(s) 89, 380, 409
NlaIV GGNNCC 2 cut(s) 142, 201
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 1 cut(s) 380
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 249
PfoI TCCNGGA 1 cut(s) 325
PinAI ACCGGT 1 cut(s) 178
PkrI GCNGC 3 cut(s) 118, 304, 453
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 142, 201
PspPI GGNCC 1 cut(s) 323
RsaI GTAC 2 cut(s) 93, 147
RsaNI GTAC 2 cut(s) 92, 146
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 3 cut(s) 117, 303, 452
Sau3AI GATC 3 cut(s) 23, 109, 173
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 101, 327
SduI GDGCHC 1 cut(s) 222
SetI ASST 6 cut(s) 93, 118, 246, 347, 387, 403
SfaNI GCATC 4 cut(s) 94, 160, 175, 446
SgrAI CRCCGGYG 1 cut(s) 178
SinI GGWCC 1 cut(s) 323
SmlI CTYRAG 2 cut(s) 340, 497
SmoI CTYRAG 2 cut(s) 340, 497
Sse9I AATT 2 cut(s) 4, 58
SsiI CCGC 7 cut(s) 107, 137, 149, 276, 310, 321, 466
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 2 cut(s) 99, 325
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 1 cut(s) 246
TaqI TCGA 2 cut(s) 112, 252
TasI AATT 2 cut(s) 4, 58
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 2 cut(s) 222, 268
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 3 cut(s) 116, 302, 451
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 4 cut(s) 46, 133, 205, 496
TspRI CASTG 2 cut(s) 222, 268
Vha464I CTTAAG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 2 cut(s) 4, 58
XceI RCATGY 1 cut(s) 380
XspI CTAG 1 cut(s) 390
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.