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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 21 |
| AccII | CGCG | 1 cut(s) | 273 |
| AciI | CCGC | 3 cut(s) | 160, 271, 273 |
| AclWI | GGATC | 2 cut(s) | 12, 192 |
| AcsI | RAATTY | 1 cut(s) | 69 |
| AcyI | GRCGYC | 1 cut(s) | 18 |
| AfaI | GTAC | 3 cut(s) | 141, 158, 326 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 118 |
| AgeI | ACCGGT | 1 cut(s) | 189 |
| AjnI | CCWGG | 1 cut(s) | 345 |
| AluBI | AGCT | 1 cut(s) | 127 |
| AluI | AGCT | 1 cut(s) | 127 |
| AlwI | GGATC | 2 cut(s) | 12, 192 |
| AoxI | GGCC | 1 cut(s) | 166 |
| ApoI | RAATTY | 1 cut(s) | 69 |
| AsiGI | ACCGGT | 1 cut(s) | 189 |
| AspS9I | GGNCC | 1 cut(s) | 103 |
| AsuHPI | GGTGA | 2 cut(s) | 179, 287 |
| AvaII | GGWCC | 1 cut(s) | 103 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 259, 292 |
| BccI | CCATC | 3 cut(s) | 109, 272, 305 |
| BciT130I | CCWGG | 1 cut(s) | 347 |
| Bme1390I | CCNGG | 1 cut(s) | 347 |
| Bme18I | GGWCC | 1 cut(s) | 103 |
| BmgT120I | GGNCC | 1 cut(s) | 103 |
| BmiI | GGNNCC | 3 cut(s) | 104, 153, 302 |
| BmrFI | CCNGG | 1 cut(s) | 347 |
| BmsI | GCATC | 2 cut(s) | 186, 240 |
| BsaHI | GRCGYC | 1 cut(s) | 18 |
| BsaJI | CCNNGG | 2 cut(s) | 271, 345 |
| BsaWI | WCCGGW | 2 cut(s) | 111, 189 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 118 |
| Bse118I | RCCGGY | 2 cut(s) | 189, 297 |
| BseBI | CCWGG | 1 cut(s) | 347 |
| BseDI | CCNNGG | 2 cut(s) | 271, 345 |
| BseGI | GGATG | 3 cut(s) | 120, 201, 252 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 118 |
| BseMII | CTCAG | 1 cut(s) | 51 |
| Bsh1236I | CGCG | 1 cut(s) | 273 |
| BshFI | GGCC | 1 cut(s) | 168 |
| BshTI | ACCGGT | 1 cut(s) | 189 |
| BsiSI | CCGG | 4 cut(s) | 77, 112, 190, 298 |
| BslFI | GGGAC | 2 cut(s) | 116, 328 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 118 |
| BsmFI | GGGAC | 2 cut(s) | 116, 328 |
| BsnI | GGCC | 1 cut(s) | 168 |
| Bsp1407I | TGTACA | 1 cut(s) | 324 |
| Bsp143I | GATC | 3 cut(s) | 4, 42, 184 |
| BspACI | CCGC | 3 cut(s) | 160, 271, 273 |
| BspANI | GGCC | 1 cut(s) | 168 |
| BspCNI | CTCAG | 1 cut(s) | 50 |
| BspFNI | CGCG | 1 cut(s) | 273 |
| BspLI | GGNNCC | 3 cut(s) | 104, 153, 302 |
| BspPI | GGATC | 2 cut(s) | 12, 192 |
| BsrFI | RCCGGY | 2 cut(s) | 189, 297 |
| BsrGI | TGTACA | 1 cut(s) | 324 |
| BssAI | RCCGGY | 2 cut(s) | 189, 297 |
| BssECI | CCNNGG | 2 cut(s) | 271, 345 |
| BssMI | GATC | 3 cut(s) | 4, 42, 184 |
| BssNI | GRCGYC | 1 cut(s) | 18 |
| Bst2UI | CCWGG | 1 cut(s) | 347 |
| Bst4CI | ACNGT | 1 cut(s) | 139 |
| BstACI | GRCGYC | 1 cut(s) | 18 |
| BstAUI | TGTACA | 1 cut(s) | 324 |
| BstDEI | CTNAG | 1 cut(s) | 37 |
| BstDSI | CCRYGG | 1 cut(s) | 271 |
| BstF5I | GGATG | 3 cut(s) | 120, 201, 252 |
| BstFNI | CGCG | 1 cut(s) | 273 |
| BstKTI | GATC | 3 cut(s) | 7, 45, 187 |
| BstMBI | GATC | 3 cut(s) | 4, 42, 184 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 279 |
| BstNI | CCWGG | 1 cut(s) | 347 |
| BstSCI | CCNGG | 1 cut(s) | 345 |
| BstUI | CGCG | 1 cut(s) | 273 |
| BsuRI | GGCC | 1 cut(s) | 168 |
| BtgI | CCRYGG | 1 cut(s) | 271 |
| BtsCI | GGATG | 3 cut(s) | 120, 201, 252 |
| BtsIMutI | CAGTG | 1 cut(s) | 45 |
| Cfr10I | RCCGGY | 2 cut(s) | 189, 297 |
| Cfr13I | GGNCC | 1 cut(s) | 103 |
| Cfr42I | CCGCGG | 1 cut(s) | 274 |
| Csp6I | GTAC | 3 cut(s) | 140, 157, 325 |
| CspAI | ACCGGT | 1 cut(s) | 189 |
| CviAII | CATG | 2 cut(s) | 97, 239 |
| CviJI | RGCY | 4 cut(s) | 127, 168, 282, 350 |
| CviKI_1 | RGCY | 4 cut(s) | 127, 168, 282, 350 |
| CviQI | GTAC | 3 cut(s) | 140, 157, 325 |
| DdeI | CTNAG | 1 cut(s) | 37 |
| DpnI | GATC | 3 cut(s) | 6, 44, 186 |
| DpnII | GATC | 3 cut(s) | 4, 42, 184 |
| Eco147I | AGGCCT | 1 cut(s) | 168 |
| Eco47I | GGWCC | 1 cut(s) | 103 |
| EcoO109I | RGGNCCY | 1 cut(s) | 103 |
| EcoRII | CCWGG | 1 cut(s) | 345 |
| FaeI | CATG | 2 cut(s) | 100, 242 |
| FaiI | YATR | 6 cut(s) | 31, 86, 98, 164, 240, 320 |
| FaqI | GGGAC | 2 cut(s) | 116, 328 |
| FatI | CATG | 2 cut(s) | 96, 238 |
| FokI | GGATG | 3 cut(s) | 127, 208, 259 |
| HaeIII | GGCC | 1 cut(s) | 168 |
| HapII | CCGG | 4 cut(s) | 77, 112, 190, 298 |
| Hin1I | GRCGYC | 1 cut(s) | 18 |
| Hin1II | CATG | 2 cut(s) | 100, 242 |
| HincII | GTYRAC | 2 cut(s) | 22, 288 |
| HindII | GTYRAC | 2 cut(s) | 22, 288 |
| HinfI | GANTC | 2 cut(s) | 58, 212 |
| HpaI | GTTAAC | 1 cut(s) | 288 |
| HpaII | CCGG | 4 cut(s) | 77, 112, 190, 298 |
| HphI | GGTGA | 2 cut(s) | 179, 287 |
| Hpy166II | GTNNAC | 2 cut(s) | 22, 288 |
| Hpy188I | TCNGA | 3 cut(s) | 63, 266, 305 |
| Hpy188III | TCNNGA | 1 cut(s) | 223 |
| Hpy8I | GTNNAC | 2 cut(s) | 22, 288 |
| Hpy99I | CGWCG | 1 cut(s) | 20 |
| HpyAV | CCTTC | 2 cut(s) | 226, 236 |
| HpyCH4III | ACNGT | 1 cut(s) | 139 |
| HpyCH4IV | ACGT | 1 cut(s) | 18 |
| HpyCH4V | TGCA | 1 cut(s) | 199 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 279 |
| HpyF3I | CTNAG | 1 cut(s) | 37 |
| HpySE526I | ACGT | 1 cut(s) | 18 |
| Hsp92I | GRCGYC | 1 cut(s) | 18 |
| Hsp92II | CATG | 2 cut(s) | 100, 242 |
| KspAI | GTTAAC | 1 cut(s) | 288 |
| KspI | CCGCGG | 1 cut(s) | 274 |
| Kzo9I | GATC | 3 cut(s) | 4, 42, 184 |
| LpnPI | CCDG | 7 cut(s) | 90, 125, 182, 203, 268, 311, 332 |
| LweI | GCATC | 2 cut(s) | 186, 240 |
| MaeII | ACGT | 1 cut(s) | 18 |
| MaeIII | GTNAC | 1 cut(s) | 233 |
| MalI | GATC | 3 cut(s) | 6, 44, 186 |
| MboI | GATC | 3 cut(s) | 4, 42, 184 |
| MboII | GAAGA | 1 cut(s) | 238 |
| MluCI | AATT | 2 cut(s) | 69, 205 |
| MlyI | GAGTC | 1 cut(s) | 221 |
| MnlI | CCTC | 3 cut(s) | 23, 84, 93 |
| MseI | TTAA | 2 cut(s) | 108, 287 |
| MspA1I | CMGCKG | 1 cut(s) | 273 |
| MspI | CCGG | 4 cut(s) | 77, 112, 190, 298 |
| MspR9I | CCNGG | 1 cut(s) | 347 |
| MvaI | CCWGG | 1 cut(s) | 347 |
| MvnI | CGCG | 1 cut(s) | 273 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 279 |
| NdeII | GATC | 3 cut(s) | 4, 42, 184 |
| NlaIII | CATG | 2 cut(s) | 100, 242 |
| NlaIV | GGNNCC | 3 cut(s) | 104, 153, 302 |
| PceI | AGGCCT | 1 cut(s) | 168 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 301 |
| PfeI | GAWTC | 1 cut(s) | 58 |
| PinAI | ACCGGT | 1 cut(s) | 189 |
| PleI | GAGTC | 1 cut(s) | 220 |
| PpsI | GAGTC | 1 cut(s) | 220 |
| PpuMI | RGGWCCY | 1 cut(s) | 103 |
| Psp5II | RGGWCCY | 1 cut(s) | 103 |
| Psp6I | CCWGG | 1 cut(s) | 345 |
| PspGI | CCWGG | 1 cut(s) | 345 |
| PspN4I | GGNNCC | 3 cut(s) | 104, 153, 302 |
| PspPI | GGNCC | 1 cut(s) | 103 |
| PspPPI | RGGWCCY | 1 cut(s) | 103 |
| RsaI | GTAC | 3 cut(s) | 141, 158, 326 |
| RsaNI | GTAC | 3 cut(s) | 140, 157, 325 |
| SacII | CCGCGG | 1 cut(s) | 274 |
| SaqAI | TTAA | 2 cut(s) | 108, 287 |
| Sau3AI | GATC | 3 cut(s) | 4, 42, 184 |
| Sau96I | GGNCC | 1 cut(s) | 103 |
| SchI | GAGTC | 1 cut(s) | 221 |
| ScrFI | CCNGG | 1 cut(s) | 347 |
| SetI | ASST | 5 cut(s) | 15, 21, 108, 129, 356 |
| SfaNI | GCATC | 2 cut(s) | 186, 240 |
| Sfr303I | CCGCGG | 1 cut(s) | 274 |
| SgrAI | CRCCGGYG | 1 cut(s) | 189 |
| SgrBI | CCGCGG | 1 cut(s) | 274 |
| SinI | GGWCC | 1 cut(s) | 103 |
| Sse9I | AATT | 2 cut(s) | 69, 205 |
| SseBI | AGGCCT | 1 cut(s) | 168 |
| SsiI | CCGC | 3 cut(s) | 160, 271, 273 |
| StuI | AGGCCT | 1 cut(s) | 168 |
| StyD4I | CCNGG | 1 cut(s) | 345 |
| TaaI | ACNGT | 1 cut(s) | 139 |
| TaiI | ACGT | 1 cut(s) | 21 |
| TaqI | TCGA | 3 cut(s) | 15, 123, 222 |
| TasI | AATT | 2 cut(s) | 69, 205 |
| TatI | WGTACW | 1 cut(s) | 324 |
| TfiI | GAWTC | 1 cut(s) | 58 |
| Tru1I | TTAA | 2 cut(s) | 108, 287 |
| Tru9I | TTAA | 2 cut(s) | 108, 287 |
| TscAI | CASTG | 1 cut(s) | 45 |
| TspDTI | ATGAA | 2 cut(s) | 208, 255 |
| TspGWI | ACGGA | 2 cut(s) | 144, 216 |
| TspRI | CASTG | 1 cut(s) | 45 |
| VpaK11BI | GGWCC | 1 cut(s) | 103 |
| XapI | RAATTY | 1 cut(s) | 69 |
| ZraI | GACGTC | 1 cut(s) | 19 |