Rh3BG122300

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000124
Physical Location & Seq
Reverse (-)
10041158 .. 10042970
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG122300.1

Sequence Viewer

Length: 1176 bp
ATGGCTACCCCCTCATTACAACTTCCACACCCAGCTGATATCCCCTTCTTTGTGACGACGGTGGATACTACCGGGCCCAGAATGAAGACTTTGAAAATACCTGCTGCTTTTCGAGAGCTTCATTTGGCGACTGATGATAGCAAGGAAGCAGTTCTGAAGTTAGTCGGATTACCTCATAATGCATGGAAAGTGGATGTCGTTGAGGCAGACAATGATAAGTTTTTGGGAGTAGGATGGGAGTGGTTTGTACGGCTCACTTGCGGGGTACAACCAAGGGTGGTACTCGTCCTCAAATACCAAGGATGTATGACATTTAGTGTCATACGGTTCGGATATAACGGCCAAGTCCTCTACTTTCTTCCTTGGTTGACTGCAACCAACCCTTGGAACAGGCTTGATCAAATATATGAAAATTTTCAGGGGTTTGCCGTTACCGCATGGGGACCTGGAAACAGCCCTGCCTCAATAGGATATGGTTCGCTCTTCAACCGATTAGTAGGTGATGGGGCCGTTATGGGGAAGATAACTTTTCAGATGTATCGCAACGAAGGACCATACTGGATGACAGAAGCTATCTTCAGTAGCGAGGGACTTTTTTTCGGTCATGGATGGCAGCATTTCGTCGACGCCATTGCACTAGACAGGAATAAATGTGCAGTCTTCAAATATCTTGGCTATTTGGCATTCAGTGTCATTGTTTTTGACTTGGAATTTGGAACAGTAGTGTTGCCTAATATGCATGATCCAAGAATTGGGGGTTCGGAGGAATGGCTGATTGAGCCGAGTTCAATTGAAGCAGGGGTGGGACACTTTCCTAAGCACGCCGGGGAAGGTATGTCTAACCAGGAAAACCCGGTTGGAGACGTACATAATGAATCAGCGGAAGTTTTGTCATTTCCGGAAAACGTTGCCGCGTTACCGACTTGCTTATTGACGATCCAAAGGGGTCATGGGGCATTTCCAACATATTTTGCGAAATTTCATCTTGGTGGAAGACCCTCAAGCCTGACTTTACAGAAGGCCACAGGTGGAACATGGCCGGTAACTACAGCTGCCACAAATGGAACTCTATATGTAAGCCGGGGTTATGCAAATTTCAAAAAAGACAACAAATTCAAAACCGGAGACTTGGTCCGCGTATTCCTGGTAGGTGAAGGCACATTGGAGTTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

391

Amino Acids

43.23

Weight (kDa)

6.13

Isoelectric Point (pI)

24.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 319 - 384 8e-06 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AccB7I CCANNNNNTGG 2 cut(s) 384, 752
AccI GTMKAC 1 cut(s) 624
AccII CGCG 2 cut(s) 914, 1137
AccIII TCCGGA 1 cut(s) 898
AciI CCGC 5 cut(s) 261, 435, 881, 912, 1135
AclI AACGTT 1 cut(s) 906
AclWI GGATC 2 cut(s) 737, 931
AcoI YGGCCR 2 cut(s) 340, 1037
AcsI RAATTY 5 cut(s) 412, 710, 977, 1093, 1112
AcuI CTGAAG 2 cut(s) 176, 562
AcyI GRCGYC 1 cut(s) 627
AfaI GTAC 4 cut(s) 249, 267, 282, 867
AfiI CCNNNNNNNGG 3 cut(s) 384, 516, 752
AgsI TTSAA 8 cut(s) 94, 487, 664, 789, 794, 1099, 1117, 1171
AjnI CCWGG 3 cut(s) 445, 843, 1143
AjuI GAANNNNNNNTTGG 2 cut(s) 840, 872
AluBI AGCT 4 cut(s) 35, 118, 572, 1052
AluI AGCT 4 cut(s) 35, 118, 572, 1052
Alw26I GTCTC 2 cut(s) 855, 1119
AlwI GGATC 2 cut(s) 737, 931
Aor13HI TCCGGA 1 cut(s) 898
AoxI GGCC 5 cut(s) 74, 340, 507, 1020, 1037
ApaI GGGCCC 1 cut(s) 78
ApeKI GCWGC 3 cut(s) 104, 613, 1052
ApoI RAATTY 5 cut(s) 412, 710, 977, 1093, 1112
ArsI GACNNNNNNTTYG 2 cut(s) 695, 727
Asp700I GAANNNNTTC 2 cut(s) 150, 414
AspS9I GGNCC 6 cut(s) 74, 75, 443, 507, 551, 1132
AsuC2I CCSGG 4 cut(s) 73, 826, 854, 1082
AsuHPI GGTGA 2 cut(s) 512, 1163
AvaII GGWCC 3 cut(s) 443, 551, 1132
BaeGI GKGCMC 1 cut(s) 78
BanII GRGCYC 1 cut(s) 78
BbsI GAAGAC 3 cut(s) 92, 652, 1000
BbvI GCAGC 3 cut(s) 91, 625, 1039
BccI CCATC 3 cut(s) 228, 497, 603
BceAI ACGGC 4 cut(s) 266, 355, 413, 494
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 3 cut(s) 447, 845, 1145
BciVI GTATCC 1 cut(s) 58
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 4 cut(s) 73, 826, 854, 1082
BcoDI GTCTC 2 cut(s) 855, 1119
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 1 cut(s) 1047
BfuAI ACCTGC 1 cut(s) 109
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 4 cut(s) 105, 614, 912, 1053
BlsI GCNGC 4 cut(s) 106, 615, 913, 1054
Bme1390I CCNGG 7 cut(s) 73, 447, 826, 845, 854, 1082, 1145
Bme18I GGWCC 3 cut(s) 443, 551, 1132
BmgT120I GGNCC 6 cut(s) 74, 75, 443, 507, 551, 1132
BmiI GGNNCC 3 cut(s) 76, 444, 508
BmrFI CCNGG 7 cut(s) 73, 447, 826, 845, 854, 1082, 1145
BpiI GAAGAC 3 cut(s) 92, 652, 1000
Bpu10I CCTNAGC 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 985
BpuMI CCSGG 4 cut(s) 73, 826, 854, 1082
BsaHI GRCGYC 1 cut(s) 627
BsaJI CCNNGG 6 cut(s) 272, 298, 362, 383, 825, 1081
BsaWI WCCGGW 2 cut(s) 898, 1121
BsaXI ACNNNNNCTCC 2 cut(s) 1116, 1146
Bsc4I CCNNNNNNNGG 3 cut(s) 384, 516, 752
Bse118I RCCGGY 1 cut(s) 1039
Bse1I ACTGG 1 cut(s) 563
Bse3DI GCAATG 1 cut(s) 630
BseAI TCCGGA 1 cut(s) 898
BseBI CCWGG 3 cut(s) 447, 845, 1145
BseDI CCNNGG 6 cut(s) 272, 298, 362, 383, 825, 1081
BseGI GGATG 5 cut(s) 199, 239, 308, 567, 614
BseLI CCNNNNNNNGG 3 cut(s) 384, 516, 752
BseMI GCAATG 1 cut(s) 630
BseNI ACTGG 1 cut(s) 563
BseSI GKGCMC 1 cut(s) 78
BseXI GCAGC 3 cut(s) 91, 625, 1039
BseYI CCCAGC 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 675
Bsh1236I CGCG 2 cut(s) 914, 1137
BshFI GGCC 5 cut(s) 76, 342, 509, 1022, 1039
BsiSI CCGG 7 cut(s) 72, 825, 854, 899, 1040, 1081, 1122
BslFI GGGAC 3 cut(s) 456, 603, 819
BslI CCNNNNNNNGG 3 cut(s) 384, 516, 752
BsmAI GTCTC 2 cut(s) 855, 1119
BsmBI CGTCTC 1 cut(s) 855
BsmFI GGGAC 3 cut(s) 456, 603, 819
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 5 cut(s) 76, 342, 509, 1022, 1039
Bsp120I GGGCCC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 898
Bsp143I GATC 3 cut(s) 397, 742, 936
BspACI CCGC 5 cut(s) 261, 435, 881, 912, 1135
BspANI GGCC 5 cut(s) 76, 342, 509, 1022, 1039
BspEI TCCGGA 1 cut(s) 898
BspFNI CGCG 2 cut(s) 914, 1137
BspLI GGNNCC 3 cut(s) 76, 444, 508
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 2 cut(s) 737, 931
BspQI GCTCTTC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 630
BsrFI RCCGGY 1 cut(s) 1039
BsrI ACTGG 1 cut(s) 563
BssAI RCCGGY 1 cut(s) 1039
BssECI CCNNGG 6 cut(s) 272, 298, 362, 383, 825, 1081
BssMI GATC 3 cut(s) 397, 742, 936
BssNI GRCGYC 1 cut(s) 627
BssT1I CCWWGG 4 cut(s) 272, 298, 362, 383
Bst2UI CCWGG 3 cut(s) 447, 845, 1145
Bst4CI ACNGT 3 cut(s) 61, 327, 721
Bst6I CTCTTC 1 cut(s) 488
BstACI GRCGYC 1 cut(s) 627
BstC8I GCNNGC 1 cut(s) 822
BstDEI CTNAG 1 cut(s) 816
BstF5I GGATG 5 cut(s) 199, 239, 308, 567, 614
BstFNI CGCG 2 cut(s) 914, 1137
BstKTI GATC 3 cut(s) 400, 745, 939
BstMAI GTCTC 2 cut(s) 855, 1119
BstMBI GATC 3 cut(s) 397, 742, 936
BstMWI GCNNNNNNNGC 3 cut(s) 434, 736, 778
BstNI CCWGG 3 cut(s) 447, 845, 1145
BstSCI CCNGG 7 cut(s) 71, 445, 824, 843, 852, 1080, 1143
BstSFI CTRYAG 1 cut(s) 1047
BstSLI GKGCMC 1 cut(s) 78
BstUI CGCG 2 cut(s) 914, 1137
BstV1I GCAGC 3 cut(s) 91, 625, 1039
BstV2I GAAGAC 3 cut(s) 92, 652, 1000
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 5 cut(s) 76, 342, 509, 1022, 1039
BtsCI GGATG 5 cut(s) 199, 239, 308, 567, 614
BtsIMutI CAGTG 1 cut(s) 694
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 822
Cfr10I RCCGGY 1 cut(s) 1039
Cfr13I GGNCC 6 cut(s) 74, 75, 443, 507, 551, 1132
CseI GACGC 1 cut(s) 635
Csp6I GTAC 4 cut(s) 248, 266, 281, 866
CviAII CATG 6 cut(s) 183, 438, 605, 740, 950, 1035
CviQI GTAC 4 cut(s) 248, 266, 281, 866
DdeI CTNAG 1 cut(s) 816
DpnI GATC 3 cut(s) 399, 744, 938
DpnII GATC 3 cut(s) 397, 742, 936
EaeI YGGCCR 2 cut(s) 340, 1037
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Eco130I CCWWGG 4 cut(s) 272, 298, 362, 383
Eco24I GRGCYC 1 cut(s) 78
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 3 cut(s) 443, 551, 1132
Eco57I CTGAAG 2 cut(s) 176, 562
EcoO109I RGGNCCY 1 cut(s) 443
EcoRII CCWGG 3 cut(s) 445, 843, 1143
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 4 cut(s) 272, 298, 362, 383
EcoT22I ATGCAT 2 cut(s) 184, 741
EcoT38I GRGCYC 1 cut(s) 78
ErhI CCWWGG 4 cut(s) 272, 298, 362, 383
Esp3I CGTCTC 1 cut(s) 855
FaeI CATG 6 cut(s) 186, 441, 608, 743, 953, 1038
FalI AAGNNNNNCTT 2 cut(s) 994, 1026
FaqI GGGAC 3 cut(s) 456, 603, 819
FatI CATG 6 cut(s) 182, 437, 604, 739, 949, 1034
FauI CCCGC 1 cut(s) 254
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 4 cut(s) 105, 614, 912, 1053
FokI GGATG 5 cut(s) 206, 246, 315, 574, 621
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 4 cut(s) 105, 614, 912, 1053
FspBI CTAG 1 cut(s) 638
GluI GCNGC 4 cut(s) 105, 614, 912, 1053
GsaI CCCAGC 1 cut(s) 35
HaeIII GGCC 5 cut(s) 76, 342, 509, 1022, 1039
HapII CCGG 7 cut(s) 72, 825, 854, 899, 1040, 1081, 1122
HgaI GACGC 1 cut(s) 635
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 6 cut(s) 186, 441, 608, 743, 953, 1038
HincII GTYRAC 2 cut(s) 369, 625
HindII GTYRAC 2 cut(s) 369, 625
HinfI GANTC 1 cut(s) 875
HpaII CCGG 7 cut(s) 72, 825, 854, 899, 1040, 1081, 1122
HphI GGTGA 2 cut(s) 512, 1163
Hpy166II GTNNAC 2 cut(s) 369, 625
Hpy188I TCNGA 5 cut(s) 156, 167, 332, 534, 763
Hpy188III TCNNGA 2 cut(s) 113, 899
Hpy8I GTNNAC 2 cut(s) 369, 625
Hpy99I CGWCG 3 cut(s) 61, 626, 629
HpyAV CCTTC 5 cut(s) 55, 542, 824, 1012, 1148
HpyCH4III ACNGT 3 cut(s) 61, 327, 721
HpyCH4IV ACGT 2 cut(s) 864, 906
HpyCH4V TGCA 6 cut(s) 182, 374, 635, 656, 739, 1091
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 736, 778
HpyF3I CTNAG 1 cut(s) 816
HpySE526I ACGT 2 cut(s) 864, 906
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 6 cut(s) 186, 441, 608, 743, 953, 1038
Kpn2I TCCGGA 1 cut(s) 898
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 3 cut(s) 397, 742, 936
LguI GCTCTTC 1 cut(s) 488
Lsp1109I GCAGC 3 cut(s) 91, 625, 1039
MaeI CTAG 1 cut(s) 638
MaeII ACGT 2 cut(s) 864, 906
MaeIII GTNAC 4 cut(s) 52, 430, 915, 1042
MalI GATC 3 cut(s) 399, 744, 938
MboI GATC 3 cut(s) 397, 742, 936
MboII GAAGA 7 cut(s) 97, 350, 475, 532, 568, 652, 1005
MfeI CAATTG 1 cut(s) 789
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 7 cut(s) 412, 710, 750, 789, 977, 1093, 1112
MmeI TCCRAC 3 cut(s) 145, 838, 986
MnlI CCTC 9 cut(s) 22, 183, 196, 299, 359, 472, 580, 757, 1009
Mph1103I ATGCAT 2 cut(s) 184, 741
MroI TCCGGA 1 cut(s) 898
MroXI GAANNNNTTC 2 cut(s) 150, 414
MslI CAYNNNNRTG 1 cut(s) 987
MspA1I CMGCKG 3 cut(s) 35, 881, 1052
MspI CCGG 7 cut(s) 72, 825, 854, 899, 1040, 1081, 1122
MspR9I CCNGG 7 cut(s) 73, 447, 826, 845, 854, 1082, 1145
MunI CAATTG 1 cut(s) 789
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 3 cut(s) 447, 845, 1145
MvnI CGCG 2 cut(s) 914, 1137
MwoI GCNNNNNNNGC 3 cut(s) 434, 736, 778
NciI CCSGG 4 cut(s) 73, 826, 854, 1082
NdeII GATC 3 cut(s) 397, 742, 936
NlaIII CATG 6 cut(s) 186, 441, 608, 743, 953, 1038
NlaIV GGNNCC 3 cut(s) 76, 444, 508
NmeAIII GCCGAG 1 cut(s) 807
NmuCI GTSAC 1 cut(s) 52
NsiI ATGCAT 2 cut(s) 184, 741
PciSI GCTCTTC 1 cut(s) 488
PctI GAATGC 1 cut(s) 683
PdmI GAANNNNTTC 2 cut(s) 150, 414
PfeI GAWTC 1 cut(s) 875
PflFI GACNNNGTC 1 cut(s) 1130
PflMI CCANNNNNTGG 2 cut(s) 384, 752
PkrI GCNGC 4 cut(s) 106, 615, 913, 1054
PpuMI RGGWCCY 1 cut(s) 443
Psp1406I AACGTT 1 cut(s) 906
Psp5II RGGWCCY 1 cut(s) 443
Psp6I CCWGG 3 cut(s) 445, 843, 1143
PspFI CCCAGC 1 cut(s) 31
PspGI CCWGG 3 cut(s) 445, 843, 1143
PspN4I GGNNCC 3 cut(s) 76, 444, 508
PspOMI GGGCCC 1 cut(s) 74
PspPI GGNCC 6 cut(s) 74, 75, 443, 507, 551, 1132
PspPPI RGGWCCY 1 cut(s) 443
PsyI GACNNNGTC 1 cut(s) 1130
PvuII CAGCTG 2 cut(s) 35, 1052
RsaI GTAC 4 cut(s) 249, 267, 282, 867
RsaNI GTAC 4 cut(s) 248, 266, 281, 866
RseI CAYNNNNRTG 1 cut(s) 987
SalI GTCGAC 1 cut(s) 623
SapI GCTCTTC 1 cut(s) 488
SatI GCNGC 4 cut(s) 105, 614, 912, 1053
Sau3AI GATC 3 cut(s) 397, 742, 936
Sau96I GGNCC 6 cut(s) 74, 75, 443, 507, 551, 1132
ScrFI CCNGG 7 cut(s) 73, 447, 826, 845, 854, 1082, 1145
SduI GDGCHC 1 cut(s) 78
SfcI CTRYAG 1 cut(s) 1047
SgrDI CGTCGACG 1 cut(s) 623
SinI GGWCC 3 cut(s) 443, 551, 1132
SmiMI CAYNNNNRTG 1 cut(s) 987
SmlI CTYRAG 1 cut(s) 1000
SmoI CTYRAG 1 cut(s) 1000
Sse9I AATT 7 cut(s) 412, 710, 750, 789, 977, 1093, 1112
SsiI CCGC 5 cut(s) 261, 435, 881, 912, 1135
SspMI CTAG 1 cut(s) 638
StyD4I CCNGG 7 cut(s) 71, 445, 824, 843, 852, 1080, 1143
StyI CCWWGG 4 cut(s) 272, 298, 362, 383
TaaI ACNGT 3 cut(s) 61, 327, 721
TaiI ACGT 2 cut(s) 867, 909
TaqI TCGA 2 cut(s) 112, 624
TaqII GACCGA 1 cut(s) 590
TasI AATT 7 cut(s) 412, 710, 750, 789, 977, 1093, 1112
TauI GCSGC 1 cut(s) 914
TfiI GAWTC 1 cut(s) 875
TscAI CASTG 1 cut(s) 694
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 3 cut(s) 104, 613, 1052
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 5 cut(s) 98, 110, 423, 888, 971
TspRI CASTG 1 cut(s) 694
Tth111I GACNNNGTC 1 cut(s) 1130
Van91I CCANNNNNTGG 2 cut(s) 384, 752
VpaK11BI GGWCC 3 cut(s) 443, 551, 1132
XapI RAATTY 5 cut(s) 412, 710, 977, 1093, 1112
XcmI CCANNNNNNNNNTGG 1 cut(s) 947
XmiI GTMKAC 1 cut(s) 624
XmnI GAANNNNTTC 2 cut(s) 150, 414
XspI CTAG 1 cut(s) 638
Zsp2I ATGCAT 2 cut(s) 184, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.