Rw0G002290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00072
OG0000124
Physical Location & Seq
Forward (+)
184772 .. 185606
835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002290.1

Sequence Viewer

Length: 726 bp
ATGCACATGAAGGATGACAACCAATCGATCGCTGATCTGTATTTGGAAGGATTACCGGACGTTCCCTACTTCGTCGACATTACACCACAAGGATCGGACAAGTGGTTTGATGGTCATTGGACTACTTTTGTTCACCGTGTCAGCAATGGTCAAGGACGGATGCTGTTGTGGTTCCATTACAGAGGGGATATGACCTTCATCGCACACCGTTTCGATGTTAACGACCGGTTGATGCTCGGAGCTCCCAAACCGCCCTTTGGATTTGTGGTGGACCAGTCAATGGAACTGACTGGTATTTTGGACTCCTTCATGTCGGACATTTGGGATCGGAAAGTAACTGTGCCTATTGTACGAAGAGGTTCTCTGCGTGACAAGCTAGTGGCAGACGGCGCGCCGGGCAGATGTGAGCTCCGTTGGGAAACAATTCTGTCAAGGCGGTGGACGGTTCACATGACAGGAAAGAAAGAGTTGACATTCGGTTCTGGATGGGACCGCTTTCAAACGGATGCAGAGTTGGACGATTCTCTGTGCTGTGTTTTCACGTGCATTGGTCGATTGTGTTTCTCTGTTCAAGTATTCAACATCAAGAGAGGGATTATGTCAATGAATCTCAGCCAAGCAGGCCTATCTAGAACTCTGCCTGATGTGAAAACAGAGGATGAAGCCTTAATGGAAGAAGAAGTCACAATTGGGGGGGGGGGGGGGGGGGGGGGGGTAGCTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.13

Weight (kDa)

5.37

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 280
AccI GTMKAC 1 cut(s) 75
AccII CGCG 1 cut(s) 392
AciI CCGC 3 cut(s) 251, 436, 493
AclWI GGATC 2 cut(s) 100, 333
AcvI CACGTG 1 cut(s) 543
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 2 cut(s) 257, 280
AgeI ACCGGT 1 cut(s) 225
AgsI TTSAA 3 cut(s) 500, 572, 580
AjuI GAANNNNNNNTTGG 2 cut(s) 672, 704
AluBI AGCT 4 cut(s) 242, 376, 409, 719
AluI AGCT 4 cut(s) 242, 376, 409, 719
Alw21I GWGCWC 2 cut(s) 244, 411
AlwI GGATC 2 cut(s) 100, 333
AoxI GGCC 1 cut(s) 622
ArsI GACNNNNNNTTYG 4 cut(s) 89, 121, 280, 312
AscI GGCGCGCC 1 cut(s) 390
AsiGI ACCGGT 1 cut(s) 225
Asp700I GAANNNNTTC 2 cut(s) 358, 423
AspLEI GCGC 2 cut(s) 392, 394
AspS9I GGNCC 2 cut(s) 271, 490
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 2 cut(s) 271, 490
BanII GRGCYC 2 cut(s) 244, 411
BbrPI CACGTG 1 cut(s) 543
Bbv12I GWGCWC 2 cut(s) 244, 411
BccI CCATC 2 cut(s) 104, 480
BceAI ACGGC 1 cut(s) 403
BcnI CCSGG 1 cut(s) 396
BfaI CTAG 2 cut(s) 377, 630
BglI GCCNNNNNGGC 1 cut(s) 621
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 2 cut(s) 271, 490
BmgT120I GGNCC 2 cut(s) 271, 490
BmiI GGNNCC 2 cut(s) 173, 491
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 3 cut(s) 150, 222, 496
BpuMI CCSGG 1 cut(s) 396
Bsa29I ATCGAT 1 cut(s) 26
BsaAI YACGTR 1 cut(s) 543
BsaWI WCCGGW 2 cut(s) 55, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 280
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 274, 295
Bse3DI GCAATG 1 cut(s) 151
BseCI ATCGAT 1 cut(s) 26
BseGI GGATG 5 cut(s) 19, 165, 491, 511, 664
BseLI CCNNNNNNNGG 2 cut(s) 257, 280
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 625
BseNI ACTGG 2 cut(s) 274, 295
BsePI GCGCGC 1 cut(s) 390
Bsh1236I CGCG 1 cut(s) 392
Bsh1285I CGRYCG 2 cut(s) 30, 226
BshFI GGCC 1 cut(s) 624
BshTI ACCGGT 1 cut(s) 225
BshVI ATCGAT 1 cut(s) 26
BsiEI CGRYCG 2 cut(s) 30, 226
BsiHKAI GWGCWC 2 cut(s) 244, 411
BsiSI CCGG 3 cut(s) 56, 226, 395
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 2 cut(s) 257, 280
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 1 cut(s) 624
Bsp1286I GDGCHC 2 cut(s) 244, 411
Bsp143I GATC 4 cut(s) 27, 34, 92, 325
BspACI CCGC 3 cut(s) 251, 436, 493
BspANI GGCC 1 cut(s) 624
BspCNI CTCAG 1 cut(s) 624
BspDI ATCGAT 1 cut(s) 26
BspFNI CGCG 1 cut(s) 392
BspLI GGNNCC 2 cut(s) 173, 491
BspPI GGATC 2 cut(s) 100, 333
BsrDI GCAATG 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 2 cut(s) 274, 295
BssAI RCCGGY 1 cut(s) 225
BssHII GCGCGC 1 cut(s) 390
BssMI GATC 4 cut(s) 27, 34, 92, 325
Bst4CI ACNGT 4 cut(s) 137, 209, 340, 445
Bst6I CTCTTC 1 cut(s) 349
BstBAI YACGTR 1 cut(s) 543
BstC8I GCNNGC 2 cut(s) 392, 622
BstDEI CTNAG 1 cut(s) 611
BstF5I GGATG 5 cut(s) 19, 165, 491, 511, 664
BstFNI CGCG 1 cut(s) 392
BstHHI GCGC 2 cut(s) 392, 394
BstKTI GATC 4 cut(s) 30, 37, 95, 328
BstMBI GATC 4 cut(s) 27, 34, 92, 325
BstMCI CGRYCG 2 cut(s) 30, 226
BstMWI GCNNNNNNNGC 4 cut(s) 373, 389, 396, 621
BstSCI CCNGG 1 cut(s) 394
BstUI CGCG 1 cut(s) 392
Bsu15I ATCGAT 1 cut(s) 26
BsuRI GGCC 1 cut(s) 624
BsuTUI ATCGAT 1 cut(s) 26
BtgZI GCGATG 1 cut(s) 184
BtsCI GGATG 5 cut(s) 19, 165, 491, 511, 664
Cac8I GCNNGC 2 cut(s) 392, 622
CfoI GCGC 2 cut(s) 392, 394
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 271, 490
ClaI ATCGAT 1 cut(s) 26
Csp6I GTAC 1 cut(s) 350
CspAI ACCGGT 1 cut(s) 225
CviAII CATG 3 cut(s) 7, 310, 451
CviJI RGCY 7 cut(s) 242, 376, 409, 615, 624, 665, 719
CviKI_1 RGCY 7 cut(s) 242, 376, 409, 615, 624, 665, 719
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 1 cut(s) 611
DpnI GATC 4 cut(s) 29, 36, 94, 327
DpnII GATC 4 cut(s) 27, 34, 92, 325
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
Ecl136II GAGCTC 2 cut(s) 242, 409
Eco147I AGGCCT 1 cut(s) 624
Eco24I GRGCYC 2 cut(s) 244, 411
Eco47I GGWCC 2 cut(s) 271, 490
Eco53kI GAGCTC 2 cut(s) 242, 409
Eco72I CACGTG 1 cut(s) 543
EcoICRI GAGCTC 2 cut(s) 242, 409
EcoT38I GRGCYC 2 cut(s) 244, 411
FaeI CATG 3 cut(s) 10, 313, 454
FaiI YATR 5 cut(s) 8, 191, 311, 452, 599
FaqI GGGAC 1 cut(s) 503
FatI CATG 3 cut(s) 6, 309, 450
FblI GTMKAC 1 cut(s) 75
FokI GGATG 5 cut(s) 26, 172, 498, 518, 671
FriOI GRGCYC 2 cut(s) 244, 411
FspBI CTAG 2 cut(s) 377, 630
GlaI GCGC 2 cut(s) 391, 393
HaeIII GGCC 1 cut(s) 624
HapII CCGG 3 cut(s) 56, 226, 395
HhaI GCGC 2 cut(s) 392, 394
Hin1II CATG 3 cut(s) 10, 313, 454
Hin6I GCGC 2 cut(s) 390, 392
HinP1I GCGC 2 cut(s) 390, 392
HincII GTYRAC 3 cut(s) 76, 220, 471
HindII GTYRAC 3 cut(s) 76, 220, 471
HinfI GANTC 3 cut(s) 302, 521, 607
HpaI GTTAAC 1 cut(s) 220
HpaII CCGG 3 cut(s) 56, 226, 395
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 7 cut(s) 76, 133, 220, 271, 441, 448, 471
Hpy188I TCNGA 5 cut(s) 97, 239, 316, 330, 725
Hpy188III TCNNGA 3 cut(s) 483, 586, 630
Hpy8I GTNNAC 7 cut(s) 76, 133, 220, 271, 441, 448, 471
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 4 cut(s) 4, 41, 205, 316
HpyCH4III ACNGT 4 cut(s) 137, 209, 340, 445
HpyCH4IV ACGT 2 cut(s) 60, 542
HpyCH4V TGCA 3 cut(s) 4, 509, 546
HpyF10VI GCNNNNNNNGC 4 cut(s) 373, 389, 396, 621
HpyF3I CTNAG 1 cut(s) 611
HpySE526I ACGT 2 cut(s) 60, 542
Hsp92II CATG 3 cut(s) 10, 313, 454
HspAI GCGC 2 cut(s) 390, 392
KspAI GTTAAC 1 cut(s) 220
Kzo9I GATC 4 cut(s) 27, 34, 92, 325
LmnI GCTCC 3 cut(s) 239, 247, 414
LpnPI CCDG 9 cut(s) 69, 239, 276, 287, 408, 441, 468, 606, 654
LweI GCATC 3 cut(s) 150, 222, 496
MaeI CTAG 2 cut(s) 377, 630
MaeII ACGT 2 cut(s) 60, 542
MaeIII GTNAC 3 cut(s) 334, 368, 682
MalI GATC 4 cut(s) 29, 36, 94, 327
MboI GATC 4 cut(s) 27, 34, 92, 325
MboII GAAGA 3 cut(s) 366, 686, 689
MfeI CAATTG 1 cut(s) 687
MhlI GDGCHC 2 cut(s) 244, 411
MluCI AATT 2 cut(s) 423, 687
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 294, 495
MnlI CCTC 4 cut(s) 176, 350, 584, 649
MroXI GAANNNNTTC 2 cut(s) 358, 423
MseI TTAA 2 cut(s) 219, 668
MspI CCGG 3 cut(s) 56, 226, 395
MspR9I CCNGG 1 cut(s) 396
MunI CAATTG 1 cut(s) 687
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 4 cut(s) 373, 389, 396, 621
NciI CCSGG 1 cut(s) 396
NdeII GATC 4 cut(s) 27, 34, 92, 325
NlaIII CATG 3 cut(s) 10, 313, 454
NlaIV GGNNCC 2 cut(s) 173, 491
NmuCI GTSAC 2 cut(s) 368, 682
PalAI GGCGCGCC 1 cut(s) 390
PauI GCGCGC 1 cut(s) 390
PceI AGGCCT 1 cut(s) 624
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PdmI GAANNNNTTC 2 cut(s) 358, 423
PfeI GAWTC 2 cut(s) 521, 607
PflMI CCANNNNNTGG 1 cut(s) 280
PinAI ACCGGT 1 cut(s) 225
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 1 cut(s) 296
PmaCI CACGTG 1 cut(s) 543
PmlI CACGTG 1 cut(s) 543
PpsI GAGTC 1 cut(s) 296
Ppu21I YACGTR 1 cut(s) 543
Psp124BI GAGCTC 2 cut(s) 244, 411
PspCI CACGTG 1 cut(s) 543
PspN4I GGNNCC 2 cut(s) 173, 491
PspPI GGNCC 2 cut(s) 271, 490
PteI GCGCGC 1 cut(s) 390
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SacI GAGCTC 2 cut(s) 244, 411
SalI GTCGAC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 219, 668
Sau3AI GATC 4 cut(s) 27, 34, 92, 325
Sau96I GGNCC 2 cut(s) 271, 490
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 396
SduI GDGCHC 2 cut(s) 244, 411
SetI ASST 8 cut(s) 63, 197, 244, 361, 378, 411, 545, 721
SfaNI GCATC 3 cut(s) 150, 222, 496
SgsI GGCGCGCC 1 cut(s) 390
SinI GGWCC 2 cut(s) 271, 490
Sse9I AATT 2 cut(s) 423, 687
SseBI AGGCCT 1 cut(s) 624
SsiI CCGC 3 cut(s) 251, 436, 493
SspMI CTAG 2 cut(s) 377, 630
SstI GAGCTC 2 cut(s) 244, 411
StuI AGGCCT 1 cut(s) 624
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 4 cut(s) 137, 209, 340, 445
TaiI ACGT 2 cut(s) 63, 545
TaqI TCGA 4 cut(s) 26, 75, 213, 553
TasI AATT 2 cut(s) 423, 687
TfiI GAWTC 2 cut(s) 521, 607
Tru1I TTAA 2 cut(s) 219, 668
Tru9I TTAA 2 cut(s) 219, 668
TseFI GTSAC 2 cut(s) 368, 682
Tsp45I GTSAC 2 cut(s) 368, 682
TspDTI ATGAA 5 cut(s) 23, 187, 298, 620, 675
TspGWI ACGGA 3 cut(s) 172, 401, 518
Van91I CCANNNNNTGG 1 cut(s) 280
VpaK11BI GGWCC 2 cut(s) 271, 490
XbaI TCTAGA 1 cut(s) 629
XmiI GTMKAC 1 cut(s) 75
XmnI GAANNNNTTC 2 cut(s) 358, 423
XspI CTAG 2 cut(s) 377, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.