Rroxscaffold_4G00309320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000124
Physical Location & Seq
Forward (+)
31089673 .. 31090285
613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309320.1

Sequence Viewer

Length: 348 bp
ATGCATGATCCAAGAATTGGGGGTTCGGAGGAATGGCTGATTGGGCCGAGTTCAATTGAAGCAGGGGTGGGACACTTTCATAATCACGCTCGGGAAGGTATGCCTAACCAGGAAAACCCGGTTGGAGACATACATAATGAAGTAGGGGAAGGCATTTCCAACATATTTTGCGAAGTTTCATCTTGGCGGAAGACCCTCAAGCCCGACTTTACGAAGGCCACGGGTGGAACATGGCCGGTAACTACAGCTGCCACAAATGGAACTCTATATGTAAGCCGGGTTATGCAAATTTCAAAACCGACAACAAATTCAATACCGGGGACTTGGTCCGCGTATTCTGGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.45

Weight (kDa)

6.17

Isoelectric Point (pI)

29.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 17
AccII CGCG 1 cut(s) 332
AciI CCGC 2 cut(s) 187, 330
AclWI GGATC 1 cut(s) 2
AcoI YGGCCR 1 cut(s) 233
AcsI RAATTY 2 cut(s) 288, 307
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 4 cut(s) 54, 59, 294, 312
AjnI CCWGG 1 cut(s) 108
AjuI GAANNNNNNNTTGG 4 cut(s) 24, 56, 105, 137
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 1 cut(s) 2
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 3 cut(s) 44, 216, 233
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 2 cut(s) 288, 307
AspS9I GGNCC 2 cut(s) 44, 327
AsuC2I CCSGG 3 cut(s) 119, 278, 318
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 110
BcnI CCSGG 3 cut(s) 119, 278, 318
BcoDI GTCTC 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 243
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 4 cut(s) 110, 119, 278, 318
Bme18I GGWCC 1 cut(s) 327
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 2 cut(s) 44, 327
BmrFI CCNGG 4 cut(s) 110, 119, 278, 318
BpiI GAAGAC 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 3 cut(s) 119, 278, 318
BsaJI CCNNGG 2 cut(s) 219, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 235
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 219, 317
BseLI CCNNNNNNNGG 1 cut(s) 17
BseXI GCAGC 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 332
BshFI GGCC 3 cut(s) 46, 218, 235
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 4 cut(s) 119, 236, 277, 317
BslFI GGGAC 2 cut(s) 84, 334
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 2 cut(s) 84, 334
BsnI GGCC 3 cut(s) 46, 218, 235
BsoBI CYCGRG 1 cut(s) 90
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 2 cut(s) 187, 330
BspANI GGCC 3 cut(s) 46, 218, 235
BspFNI CGCG 1 cut(s) 332
BspPI GGATC 1 cut(s) 2
BsrFI RCCGGY 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 219, 317
BssMI GATC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 110
BstDSI CCRYGG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 332
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 4 cut(s) 108, 117, 276, 316
BstSFI CTRYAG 1 cut(s) 243
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 197
BsuRI GGCC 3 cut(s) 46, 218, 235
BtgI CCRYGG 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 2 cut(s) 44, 327
CviAII CATG 2 cut(s) 5, 231
CviJI RGCY 7 cut(s) 37, 46, 202, 218, 235, 248, 276
CviKI_1 RGCY 7 cut(s) 37, 46, 202, 218, 235, 248, 276
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
EaeI YGGCCR 1 cut(s) 233
EciI GGCGGA 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 234
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FaqI GGGAC 2 cut(s) 84, 334
FatI CATG 2 cut(s) 4, 230
Fnu4HI GCNGC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 249
HaeIII GGCC 3 cut(s) 46, 218, 235
HapII CCGG 4 cut(s) 119, 236, 277, 317
Hin1II CATG 2 cut(s) 8, 234
HpaII CCGG 4 cut(s) 119, 236, 277, 317
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 92
HpyAV CCTTC 3 cut(s) 89, 143, 208
HpyCH4V TGCA 2 cut(s) 4, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
Hsp92II CATG 2 cut(s) 8, 234
Kzo9I GATC 1 cut(s) 7
LpnPI CCDG 8 cut(s) 48, 95, 122, 132, 249, 290, 324, 330
Lsp1109I GCAGC 1 cut(s) 235
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 1 cut(s) 202
MfeI CAATTG 1 cut(s) 54
MluCI AATT 4 cut(s) 15, 54, 288, 307
MmeI TCCRAC 2 cut(s) 103, 183
MnlI CCTC 2 cut(s) 22, 206
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 4 cut(s) 119, 236, 277, 317
MspR9I CCNGG 4 cut(s) 110, 119, 278, 318
MunI CAATTG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 3 cut(s) 119, 278, 318
NdeII GATC 1 cut(s) 7
NlaIII CATG 2 cut(s) 8, 234
NmeAIII GCCGAG 1 cut(s) 72
NsiI ATGCAT 1 cut(s) 6
PflFI GACNNNGTC 1 cut(s) 325
PflMI CCANNNNNTGG 1 cut(s) 17
PkrI GCNGC 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspPI GGNCC 2 cut(s) 44, 327
PsyI GACNNNGTC 1 cut(s) 325
PvuII CAGCTG 1 cut(s) 248
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 2 cut(s) 44, 327
ScrFI CCNGG 4 cut(s) 110, 119, 278, 318
SetI ASST 3 cut(s) 100, 250, 347
SfcI CTRYAG 1 cut(s) 243
SinI GGWCC 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 4 cut(s) 15, 54, 288, 307
SsiI CCGC 2 cut(s) 187, 330
StyD4I CCNGG 4 cut(s) 108, 117, 276, 316
TasI AATT 4 cut(s) 15, 54, 288, 307
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 3 cut(s) 68, 153, 168
Tth111I GACNNNGTC 1 cut(s) 325
Van91I CCANNNNNTGG 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 327
XapI RAATTY 2 cut(s) 288, 307
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.