Rw6G016600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000124
Physical Location & Seq
Forward (+)
32797421 .. 32801395
3975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016600.1

Sequence Viewer

Length: 2334 bp
ATGGGCAAAGGGAAGCATGAAAGTGCTGTGCAAGCGCCTGTCAACCTTTCACGTGATGCGGGGAGAAAAGAAAAGAAAGTGACATTTTCGAAGATTGCCGAGTTTAATATCGCCGTCAGGAACATGTCAGCGGAAAAAGCTCAGGCCGTTGAGGATGCGGGGTTTGGATTTCTTCAATGCATACGATGCGAAGACGTGGTTCCGGAAATATTTTGTGAAATGGTGAACAAAATCAACACGGAAGAGTGCAATGTCAGTTTGAAGGGAAAGATATTGTCTTTGGACGCTGATGAGTTTGCACGGGTCATGGGCATTCGCAACAGTGGGGTTCAGATTGAGCTCGGGGGTGACATTACTCCTGCTGAATATGGCAATGTTGTAGGTCCGATGATTGGGGCCGATGGGAAAATTTCATTGGACGCTCTGAGCTGCATTGTGCGTGACAGGGAAATGGTGGACGACACCTTCATTATAGCTTACGTAATGATGGCAATGACCACTTTGATTTGTCCCGGAACGAGTAATGCAGTCCAAAGTGGCCTGTTGTTGCCTTTAATAGACACCACAAGTATAGCAACCAAGAATTGGGCTGGGTTTGCAGTGGACTACTTGATGGACGGCATTCGAAATCACCGGCGACAAGGAACCCCGTTTGTAGCGGGATGTGCATTATATCTGCAGCTGGTATATTGTGACAAAATTGGTAACAAGTTACTCCGTAAGGAGCGGCTGGTTGCTCCTTTGATGGATTGGAGTCTTGGAGAGATAAATGAGCTGCTGGGAAGGTTAGTTGCAGACAATATAAGCAAGATACAAGGTGACACGAGGGACAACTATAATAAGGGAACGAGCGTGGATAAGCCGGATAACGATGAGGAGTCTGTGGGTTTCCCACTAAGGAAATCACTACACGAAGACCTATTTCAAGTGATGGTGGACGTGGGGAGGTTGAAGGATGATATGGCCATTGTCAAAGATGTGGTAACAATAATACCACATAAAGTCATGGAGCTAACAAACGGACTATTGTTGCTGGCGGAATCCTTATTGAAGGTGAAGGAAGAATGTGTTGCAGAGGTAAGAGAAGAGTGGAAAATGATGCGGATGAACAATCAGAGGACGGAGAGTAGGGAAATGCCGGACCAAGTCAATATGAGAAAGGGGTGGCGAGTGCAGAAAGGAAATGAGGGAGACAACAACGTACCTTGCATGGGAGCAGAGCAGATTGCATCGAAAGAGGGTGACAGAGTTATGGTAGAAGGACTTCATTGGCGTGGAAAGGCGGTTCGGTCGGACTCTGCAAGCAGTCCAACAGGAATACAATGTAATACATTGCGGCAGCCAGGCAACAGGGCAGAAGCAAGTGTAAAGCGATCTCATGCGCGTGCCATGGGTGAGAACAGAAGTGATAAATACGACTACATCAAGTACGTCATGGGCTTTACGGGTATGGAAGAGGATACTATTGGATGCAGGGGAGGAATTGTTGCAGGACCGTATAGACTGAGTGTGCCATTAACAGATTTGGACGTCGGTGTTATAGACTTCGTATTTTTGGGGGGAAAGGTTCTAACAGCAGAAGAAATAAGAACATGGCTAGCGGTGTGTGGCGAGGGGACTGACCTGCTGTACAGAGGTGACTTGGTCACCCTTAACCCTTGTGTTTGGGTATCCGCAAGTGTCATTAATTATGTCGCGGCATTCCTTACCAAGCGTGATGAGTACAGAAATTGGTATTGGCTGATAGAGTTTGCGTATAGAGCTACTCATAATGAGGATACATCATGGGTAGCATGGGTTCAGCATACTAGGGAAATCTGCAAGTTGGATGCGTTCAACGGACATATTGACAAGTGCGAAAAGCTACAACACATTGATCGTGTCATGATTGTTGAGAACATCAAGCAAAATGGGAGTGGGAAAACAGTATCTTATTTTGTTGCAGTGGAACCGCACCGTGTCCCCAAACAAAGGAATTCATACGATTGTGGGGTGTACGTTATTAAGAACATGCAACATTATGGGACTGACTGGGGAAAGCGGTATGACTCTCACGAAATGCGAGCTTCCATAGTACTAGACTGTATGAAAGCACCGAATAACGATATGTCAAGAGCAATAGAAGATGTGATTACAGGGATTCACTATGGTGCTGACGATCAAGTCACGCAAGTACGGGTGGAACAGACCCCAACAATAGCACATCCATTTGAGGAATGGGGTTCTGAGGAGTTTCACCTATTTCAGGAACCGGGGGATTGGATTGGAGATGGCCGTGATTGGGGAAACAAACAGCCCAAACTTGGGGAAATGTCACAAACTAGGATTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

777

Amino Acids

87.1

Weight (kDa)

5.52

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 603 - 674 7.4e-07 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2162
AatII GACGTC 1 cut(s) 1533
Acc36I ACCTGC 1 cut(s) 1632
AccB7I CCANNNNNTGG 1 cut(s) 585
AccBSI CCGCTC 1 cut(s) 727
AccII CGCG 2 cut(s) 1384, 1697
AccIII TCCGGA 1 cut(s) 202
AcoI YGGCCR 2 cut(s) 963, 2272
AcsI RAATTY 2 cut(s) 408, 1975
AcvI CACGTG 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 1530
AfaI GTAC 7 cut(s) 1203, 1430, 1631, 1724, 1997, 2076, 2175
AfiI CCNNNNNNNGG 8 cut(s) 392, 585, 1211, 1971, 2245, 2281, 2303, 2304
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 6 cut(s) 176, 262, 926, 952, 1051, 1837
AjiI CACGTC 2 cut(s) 196, 940
AjnI CCWGG 1 cut(s) 1342
AjuI GAANNNNNNNTTGG 4 cut(s) 398, 430, 1720, 1752
AleI CACNNNNGTG 1 cut(s) 2148
AloI GAACNNNNNNTCC 2 cut(s) 1269, 1301
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 1185
Ama87I CYCGRG 1 cut(s) 341
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 5 cut(s) 144, 396, 538, 963, 2272
ApeKI GCWGC 4 cut(s) 429, 679, 775, 1339
ApoI RAATTY 2 cut(s) 408, 1975
AseI ATTAAT 1 cut(s) 1686
Asp700I GAANNNNTTC 1 cut(s) 1263
AspLEI GCGC 2 cut(s) 37, 1384
AspS9I GGNCC 4 cut(s) 383, 396, 1141, 1493
AsuC2I CCSGG 2 cut(s) 513, 2253
AsuII TTCGAA 2 cut(s) 89, 625
AsuNHI GCTAGC 1 cut(s) 1597
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 3 cut(s) 383, 1141, 1493
BalI TGGCCA 1 cut(s) 965
BanII GRGCYC 1 cut(s) 342
BarI GAAGNNNNNNTAC 2 cut(s) 1248, 1280
BauI CACGAG 1 cut(s) 823
BbrPI CACGTG 1 cut(s) 53
BbsI GAAGAC 2 cut(s) 198, 921
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 4 cut(s) 416, 691, 762, 1351
BccI CCATC 6 cut(s) 395, 481, 607, 739, 925, 2264
BceAI ACGGC 4 cut(s) 98, 131, 634, 2259
BciT130I CCWGG 1 cut(s) 1344
BciVI GTATCC 3 cut(s) 1453, 1681, 1771
BcnI CCSGG 2 cut(s) 513, 2253
BcoDI GTCTC 1 cut(s) 1185
BfaI CTAG 4 cut(s) 1598, 1809, 2078, 2322
BfmI CTRYAG 1 cut(s) 677
BfoI RGCGCY 1 cut(s) 38
BfuAI ACCTGC 1 cut(s) 1632
BfuI GTATCC 3 cut(s) 1453, 1681, 1771
BisI GCNGC 7 cut(s) 430, 680, 728, 776, 1337, 1340, 1698
BlsI GCNGC 7 cut(s) 431, 681, 729, 777, 1338, 1341, 1699
BmcAI AGTACT 1 cut(s) 2076
Bme1390I CCNGG 3 cut(s) 513, 1344, 2253
Bme18I GGWCC 3 cut(s) 383, 1141, 1493
BmeT110I CYCGRG 1 cut(s) 341
BmgBI CACGTC 2 cut(s) 196, 940
BmgT120I GGNCC 4 cut(s) 383, 396, 1141, 1493
BmiI GGNNCC 5 cut(s) 201, 397, 646, 1950, 2250
BmrFI CCNGG 3 cut(s) 513, 1344, 2253
BmrI ACTGGG 1 cut(s) 2041
BmsI GCATC 7 cut(s) 46, 145, 176, 1089, 1238, 1460, 1819
BmtI GCTAGC 1 cut(s) 1601
BmuI ACTGGG 1 cut(s) 2041
BpiI GAAGAC 2 cut(s) 198, 921
Bpu10I CCTNAGC 1 cut(s) 141
Bpu14I TTCGAA 2 cut(s) 89, 625
BpuMI CCSGG 2 cut(s) 513, 2253
BsaAI YACGTR 2 cut(s) 53, 481
BsaHI GRCGYC 1 cut(s) 1530
BsaJI CCNNGG 2 cut(s) 1389, 2252
BsaWI WCCGGW 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 1470, 1500
Bsc4I CCNNNNNNNGG 8 cut(s) 392, 585, 1211, 1971, 2245, 2281, 2303, 2304
Bse118I RCCGGY 1 cut(s) 633
Bse1I ACTGG 1 cut(s) 2036
Bse3DI GCAATG 4 cut(s) 256, 379, 498, 1331
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 1 cut(s) 1344
BseDI CCNNGG 2 cut(s) 1389, 2252
BseGI GGATG 7 cut(s) 160, 668, 961, 1110, 1475, 1834, 2203
BseLI CCNNNNNNNGG 8 cut(s) 392, 585, 1211, 1971, 2245, 2281, 2303, 2304
BseMI GCAATG 4 cut(s) 256, 379, 498, 1331
BseMII CTCAG 4 cut(s) 155, 416, 1496, 2217
BseNI ACTGG 1 cut(s) 2036
BseRI GAGGAG 2 cut(s) 890, 2243
BseXI GCAGC 4 cut(s) 416, 691, 762, 1351
BseYI CCCAGC 2 cut(s) 590, 778
BsgI GTGCAG 1 cut(s) 1193
Bsh1236I CGCG 2 cut(s) 1384, 1697
Bsh1285I CGRYCG 1 cut(s) 1292
BshFI GGCC 5 cut(s) 146, 398, 540, 965, 2274
BsiEI CGRYCG 1 cut(s) 1292
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 6 cut(s) 203, 513, 634, 863, 1139, 2252
BslFI GGGAC 5 cut(s) 495, 842, 1630, 1946, 2038
BslI CCNNNNNNNGG 8 cut(s) 392, 585, 1211, 1971, 2245, 2281, 2303, 2304
BsmAI GTCTC 1 cut(s) 1185
BsmFI GGGAC 5 cut(s) 495, 842, 1630, 1946, 2038
BsmI GAATGC 3 cut(s) 312, 621, 1700
BsnI GGCC 5 cut(s) 146, 398, 540, 965, 2274
BsoBI CYCGRG 1 cut(s) 341
Bsp119I TTCGAA 2 cut(s) 89, 625
Bsp1286I GDGCHC 1 cut(s) 342
Bsp13I TCCGGA 1 cut(s) 202
Bsp1407I TGTACA 1 cut(s) 1629
Bsp143I GATC 3 cut(s) 1373, 1876, 2158
Bsp19I CCATGG 1 cut(s) 1389
BspANI GGCC 5 cut(s) 146, 398, 540, 965, 2274
BspCNI CTCAG 4 cut(s) 154, 417, 1497, 2218
BspEI TCCGGA 1 cut(s) 202
BspFNI CGCG 2 cut(s) 1384, 1697
BspHI TCATGA 1 cut(s) 1884
BspLI GGNNCC 5 cut(s) 201, 397, 646, 1950, 2250
BspMAI CTGCAG 1 cut(s) 681
BspMI ACCTGC 1 cut(s) 1632
BspOI GCTAGC 1 cut(s) 1601
BspT104I TTCGAA 2 cut(s) 89, 625
BsrBI CCGCTC 1 cut(s) 727
BsrDI GCAATG 4 cut(s) 256, 379, 498, 1331
BsrFI RCCGGY 1 cut(s) 633
BsrGI TGTACA 1 cut(s) 1629
BsrI ACTGG 1 cut(s) 2036
BssAI RCCGGY 1 cut(s) 633
BssECI CCNNGG 2 cut(s) 1389, 2252
BssMI GATC 3 cut(s) 1373, 1876, 2158
BssNI GRCGYC 1 cut(s) 1530
BssSI CACGAG 1 cut(s) 823
BssT1I CCWWGG 1 cut(s) 1389
Bst2BI CACGAG 1 cut(s) 823
Bst2UI CCWGG 1 cut(s) 1344
Bst4CI ACNGT 5 cut(s) 323, 1497, 1927, 1958, 2084
Bst6I CTCTTC 3 cut(s) 237, 1080, 1449
BstACI GRCGYC 1 cut(s) 1530
BstAPI GCANNNNNTGC 1 cut(s) 186
BstAUI TGTACA 1 cut(s) 1629
BstBAI YACGTR 2 cut(s) 53, 481
BstBI TTCGAA 2 cut(s) 89, 625
BstC8I GCNNGC 6 cut(s) 33, 1035, 1303, 1386, 1599, 2064
BstDEI CTNAG 5 cut(s) 141, 425, 896, 1505, 2226
BstDSI CCRYGG 1 cut(s) 1389
BstEII GGTNACC 1 cut(s) 1645
BstENI CCTNNNNNAGG 1 cut(s) 2243
BstF5I GGATG 7 cut(s) 160, 668, 961, 1110, 1475, 1834, 2203
BstFNI CGCG 2 cut(s) 1384, 1697
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 2 cut(s) 37, 1384
BstKTI GATC 3 cut(s) 1376, 1879, 2161
BstMAI GTCTC 1 cut(s) 1185
BstMBI GATC 3 cut(s) 1373, 1876, 2158
BstMCI CGRYCG 1 cut(s) 1292
BstMWI GCNNNNNNNGC 6 cut(s) 32, 137, 186, 596, 665, 1760
BstNI CCWGG 1 cut(s) 1344
BstNSI RCATGY 2 cut(s) 127, 2014
BstPI GGTNACC 1 cut(s) 1645
BstSCI CCNGG 3 cut(s) 511, 1342, 2251
BstSFI CTRYAG 1 cut(s) 677
BstSNI TACGTA 1 cut(s) 481
BstUI CGCG 2 cut(s) 1384, 1697
BstV1I GCAGC 4 cut(s) 416, 691, 762, 1351
BstV2I GAAGAC 2 cut(s) 198, 921
BsuI GTATCC 3 cut(s) 1453, 1681, 1771
BsuRI GGCC 5 cut(s) 146, 398, 540, 965, 2274
BtgI CCRYGG 1 cut(s) 1389
BtrI CACGTC 2 cut(s) 196, 940
BtsCI GGATG 7 cut(s) 160, 668, 961, 1110, 1475, 1834, 2203
BtsI GCAGTG 2 cut(s) 606, 1950
BtsIMutI CAGTG 3 cut(s) 328, 606, 1950
BveI ACCTGC 1 cut(s) 1632
Cac8I GCNNGC 6 cut(s) 33, 1035, 1303, 1386, 1599, 2064
CciI TCATGA 1 cut(s) 1884
CfoI GCGC 2 cut(s) 37, 1384
Cfr10I RCCGGY 1 cut(s) 633
Cfr13I GGNCC 4 cut(s) 383, 396, 1141, 1493
CseI GACGC 2 cut(s) 293, 428
Csp6I GTAC 7 cut(s) 1202, 1429, 1630, 1723, 1996, 2075, 2174
CviQI GTAC 7 cut(s) 1202, 1429, 1630, 1723, 1996, 2075, 2174
DdeI CTNAG 5 cut(s) 141, 425, 896, 1505, 2226
DpnI GATC 3 cut(s) 1375, 1878, 2160
DpnII GATC 3 cut(s) 1373, 1876, 2158
DrdI GACNNNNNNGTC 1 cut(s) 2162
DseDI GACNNNNNNGTC 1 cut(s) 2162
EaeI YGGCCR 2 cut(s) 963, 2272
Eam1104I CTCTTC 3 cut(s) 237, 1080, 1449
EarI CTCTTC 3 cut(s) 237, 1080, 1449
EciI GGCGGA 1 cut(s) 1052
Ecl136II GAGCTC 1 cut(s) 340
Eco105I TACGTA 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 1389
Eco24I GRGCYC 1 cut(s) 342
Eco47I GGWCC 3 cut(s) 383, 1141, 1493
Eco53kI GAGCTC 1 cut(s) 340
Eco72I CACGTG 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 341
Eco91I GGTNACC 1 cut(s) 1645
EcoICRI GAGCTC 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 2243
EcoO65I GGTNACC 1 cut(s) 1645
EcoRI GAATTC 1 cut(s) 1975
EcoRII CCWGG 1 cut(s) 1342
EcoT14I CCWWGG 1 cut(s) 1389
EcoT22I ATGCAT 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 1389
FaqI GGGAC 5 cut(s) 495, 842, 1630, 1946, 2038
FauI CCCGC 3 cut(s) 52, 151, 652
Fnu4HI GCNGC 7 cut(s) 430, 680, 728, 776, 1337, 1340, 1698
FokI GGATG 7 cut(s) 167, 675, 968, 1117, 1482, 1841, 2190
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 7 cut(s) 430, 680, 728, 776, 1337, 1340, 1698
FspBI CTAG 4 cut(s) 1598, 1809, 2078, 2322
GlaI GCGC 2 cut(s) 36, 1383
GluI GCNGC 7 cut(s) 430, 680, 728, 776, 1337, 1340, 1698
GsaI CCCAGC 2 cut(s) 594, 782
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 5 cut(s) 146, 398, 540, 965, 2274
HapII CCGG 6 cut(s) 203, 513, 634, 863, 1139, 2252
HgaI GACGC 2 cut(s) 293, 428
HhaI GCGC 2 cut(s) 37, 1384
Hin1I GRCGYC 1 cut(s) 1530
Hin6I GCGC 2 cut(s) 35, 1382
HinP1I GCGC 2 cut(s) 35, 1382
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 6 cut(s) 754, 878, 1040, 1295, 2048, 2140
HpaII CCGG 6 cut(s) 203, 513, 634, 863, 1139, 2252
Hpy166II GTNNAC 6 cut(s) 43, 226, 457, 604, 937, 1996
Hpy188I TCNGA 6 cut(s) 333, 387, 426, 1116, 1294, 2227
Hpy188III TCNNGA 6 cut(s) 118, 203, 1885, 2054, 2112, 2246
Hpy8I GTNNAC 6 cut(s) 43, 226, 457, 604, 937, 1996
Hpy99I CGWCG 1 cut(s) 1535
HpyAV CCTTC 7 cut(s) 256, 475, 777, 946, 1045, 1051, 1253
HpyCH4III ACNGT 5 cut(s) 323, 1497, 1927, 1958, 2084
HpyCH4IV ACGT 8 cut(s) 52, 195, 480, 939, 1200, 1431, 1530, 1998
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 137, 186, 596, 665, 1760
HpyF3I CTNAG 5 cut(s) 141, 425, 896, 1505, 2226
HpySE526I ACGT 8 cut(s) 52, 195, 480, 939, 1200, 1431, 1530, 1998
Hsp92I GRCGYC 1 cut(s) 1530
HspAI GCGC 2 cut(s) 35, 1382
Kpn2I TCCGGA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 1373, 1876, 2158
LmnI GCTCC 4 cut(s) 724, 742, 1009, 1214
Lsp1109I GCAGC 4 cut(s) 416, 691, 762, 1351
LweI GCATC 7 cut(s) 46, 145, 176, 1089, 1238, 1460, 1819
MaeI CTAG 4 cut(s) 1598, 1809, 2078, 2322
MaeII ACGT 8 cut(s) 52, 195, 480, 939, 1200, 1431, 1530, 1998
MalI GATC 3 cut(s) 1375, 1878, 2160
MbiI CCGCTC 1 cut(s) 727
MboI GATC 3 cut(s) 1373, 1876, 2158
MhlI GDGCHC 1 cut(s) 342
MlsI TGGCCA 1 cut(s) 965
MluCI AATT 7 cut(s) 408, 583, 699, 1482, 1687, 1729, 1975
MluNI TGGCCA 1 cut(s) 965
MlyI GAGTC 4 cut(s) 763, 887, 1289, 2042
MmeI TCCRAC 3 cut(s) 1272, 1334, 1806
Mox20I TGGCCA 1 cut(s) 965
Mph1103I ATGCAT 1 cut(s) 182
MroI TCCGGA 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 1263
MscI TGGCCA 1 cut(s) 965
MseI TTAA 6 cut(s) 105, 554, 1517, 1653, 1686, 2004
MslI CAYNNNNRTG 4 cut(s) 21, 1272, 1383, 2148
Msp20I TGGCCA 1 cut(s) 965
MspA1I CMGCKG 2 cut(s) 131, 682
MspI CCGG 6 cut(s) 203, 513, 634, 863, 1139, 2252
MspR9I CCNGG 3 cut(s) 513, 1344, 2253
Mva1269I GAATGC 3 cut(s) 312, 621, 1700
MvaI CCWGG 1 cut(s) 1344
MvnI CGCG 2 cut(s) 1384, 1697
MwoI GCNNNNNNNGC 6 cut(s) 32, 137, 186, 596, 665, 1760
NciI CCSGG 2 cut(s) 513, 2253
NcoI CCATGG 1 cut(s) 1389
NdeII GATC 3 cut(s) 1373, 1876, 2158
NheI GCTAGC 1 cut(s) 1597
NlaIV GGNNCC 5 cut(s) 201, 397, 646, 1950, 2250
NmeAIII GCCGAG 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 182
NspI RCATGY 2 cut(s) 127, 2014
NspV TTCGAA 2 cut(s) 89, 625
OliI CACNNNNGTG 1 cut(s) 2148
PagI TCATGA 1 cut(s) 1884
PciI ACATGT 1 cut(s) 123
PctI GAATGC 3 cut(s) 312, 621, 1700
PdmI GAANNNNTTC 1 cut(s) 1263
PfeI GAWTC 2 cut(s) 1040, 2140
PflFI GACNNNGTC 2 cut(s) 1145, 1643
PflMI CCANNNNNTGG 1 cut(s) 585
PfoI TCCNGGA 1 cut(s) 511
PkrI GCNGC 7 cut(s) 431, 681, 729, 777, 1338, 1341, 1699
PleI GAGTC 4 cut(s) 762, 886, 1289, 2042
PmaCI CACGTG 1 cut(s) 53
PmlI CACGTG 1 cut(s) 53
PpsI GAGTC 4 cut(s) 762, 886, 1289, 2042
Ppu21I YACGTR 2 cut(s) 53, 481
PscI ACATGT 1 cut(s) 123
PshBI ATTAAT 1 cut(s) 1686
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 1342
PspCI CACGTG 1 cut(s) 53
PspEI GGTNACC 1 cut(s) 1645
PspFI CCCAGC 2 cut(s) 590, 778
PspGI CCWGG 1 cut(s) 1342
PspN4I GGNNCC 5 cut(s) 201, 397, 646, 1950, 2250
PspPI GGNCC 4 cut(s) 383, 396, 1141, 1493
PsrI GAACNNNNNNTAC 2 cut(s) 1782, 1814
PstI CTGCAG 1 cut(s) 681
PsyI GACNNNGTC 2 cut(s) 1145, 1643
PvuII CAGCTG 1 cut(s) 682
RsaI GTAC 7 cut(s) 1203, 1430, 1631, 1724, 1997, 2076, 2175
RsaNI GTAC 7 cut(s) 1202, 1429, 1630, 1723, 1996, 2075, 2174
RseI CAYNNNNRTG 4 cut(s) 21, 1272, 1383, 2148
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 6 cut(s) 105, 554, 1517, 1653, 1686, 2004
SatI GCNGC 7 cut(s) 430, 680, 728, 776, 1337, 1340, 1698
Sau3AI GATC 3 cut(s) 1373, 1876, 2158
Sau96I GGNCC 4 cut(s) 383, 396, 1141, 1493
ScaI AGTACT 1 cut(s) 2076
SchI GAGTC 4 cut(s) 763, 887, 1289, 2042
ScrFI CCNGG 3 cut(s) 513, 1344, 2253
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 7 cut(s) 46, 145, 176, 1089, 1238, 1460, 1819
SfcI CTRYAG 1 cut(s) 677
SfuI TTCGAA 2 cut(s) 89, 625
SgrAI CRCCGGYG 1 cut(s) 633
SinI GGWCC 3 cut(s) 383, 1141, 1493
SmiMI CAYNNNNRTG 4 cut(s) 21, 1272, 1383, 2148
SnaBI TACGTA 1 cut(s) 481
Sse9I AATT 7 cut(s) 408, 583, 699, 1482, 1687, 1729, 1975
SspI AATATT 1 cut(s) 210
SspMI CTAG 4 cut(s) 1598, 1809, 2078, 2322
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 511, 1342, 2251
StyI CCWWGG 1 cut(s) 1389
TaaI ACNGT 5 cut(s) 323, 1497, 1927, 1958, 2084
TaiI ACGT 8 cut(s) 55, 198, 483, 942, 1203, 1434, 1533, 2001
TaqI TCGA 3 cut(s) 89, 625, 1232
TaqII GACCGA 1 cut(s) 1278
TasI AATT 7 cut(s) 408, 583, 699, 1482, 1687, 1729, 1975
TatI WGTACW 3 cut(s) 1629, 1722, 2074
TauI GCSGC 3 cut(s) 730, 1339, 1700
TfiI GAWTC 2 cut(s) 1040, 2140
Tru1I TTAA 6 cut(s) 105, 554, 1517, 1653, 1686, 2004
Tru9I TTAA 6 cut(s) 105, 554, 1517, 1653, 1686, 2004
TscAI CASTG 3 cut(s) 328, 606, 1950
TseI GCWGC 4 cut(s) 429, 679, 775, 1339
TspDTI ATGAA 7 cut(s) 33, 402, 457, 1121, 1256, 1968, 2102
TspGWI ACGGA 5 cut(s) 254, 707, 1035, 1136, 1854
TspRI CASTG 3 cut(s) 328, 606, 1950
Tth111I GACNNNGTC 2 cut(s) 1145, 1643
Van91I CCANNNNNTGG 1 cut(s) 585
VpaK11BI GGWCC 3 cut(s) 383, 1141, 1493
VspI ATTAAT 1 cut(s) 1686
XagI CCTNNNNNAGG 1 cut(s) 2243
XapI RAATTY 2 cut(s) 408, 1975
XceI RCATGY 2 cut(s) 127, 2014
XcmI CCANNNNNNNNNTGG 1 cut(s) 2214
XmnI GAANNNNTTC 1 cut(s) 1263
XspI CTAG 4 cut(s) 1598, 1809, 2078, 2322
ZraI GACGTC 1 cut(s) 1531
ZrmI AGTACT 1 cut(s) 2076
Zsp2I ATGCAT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.