Rmu_sc0003047.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003047.1
OG0000124
Physical Location & Seq
Forward (+)
28496 .. 31031
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003047.1_g000008.1.cds

Sequence Viewer

Length: 915 bp
atgaattgggctgatgtggacgacatgttccgtattgcatttacaatgcttgcattggttctggtgctatgcctaggcacgggtgacaatgtcgatccatccttggtactcccgctactagagatgggggagattgggaagaaaaattgggcttcattctatgtgaagacattactggaagctgtgactactcagcgggaatctggtgactatgtaattggtgggtgcgttctgttcttgcaaaccctttattttgataaggttggcgattccatgtttcacgtggataggtgccttggaggcttcaagagcccaattgttatgatggaaaggagtaaccgttccaagatggcaacaaagtgcgatgtagatgacggtgagtttgggcttggactgaggaagggggttcatgaggatatttttgatatcaagctggacatgatgggtgttaagggtgacatcaacaggcttactgggattgttggaaggctgcaacctgacatggccgagctgacaaggaaagtggacattatatcacagcagttacgtagttggaagaaagaagctgcagagatggtgaggcgtgagaggcagccgaggaatgacaataggaaaaatgagaagtcggtgcaggatgctgcaatagagctggaggagaacatgggcacgcgaacaatgaattccaagcaggttacgggaaggaatggtctggctgagggacgcaccttgctggatgagggactgacgatgccagatcagacgcgttgcccagtggttccatttttagtgtttgtaaaaggattagaaggcagccccttcgtacaagatactgttgggtccctcacaatgttgctgcttggaggcacatttgatgtgtctattggtaaatccacacagaattcgctagaagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

304

Amino Acids

33.81

Weight (kDa)

5.22

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 679
AccB1I GGYRCC 1 cut(s) 291
AccII CGCG 2 cut(s) 670, 763
AciI CCGC 2 cut(s) 113, 196
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 2 cut(s) 679, 898
AcvI CACGTG 1 cut(s) 283
AfaI GTAC 2 cut(s) 108, 822
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 2 cut(s) 24, 761
AgsI TTSAA 1 cut(s) 307
AloI GAACNNNNNNTCC 4 cut(s) 11, 43, 325, 357
AluBI AGCT 5 cut(s) 182, 433, 511, 566, 649
AluI AGCT 5 cut(s) 182, 433, 511, 566, 649
AlwI GGATC 1 cut(s) 89
AoxI GGCC 1 cut(s) 504
ApeKI GCWGC 6 cut(s) 490, 566, 592, 638, 810, 853
ApoI RAATTY 2 cut(s) 679, 898
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AspA2I CCTAGG 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 837
AsuHPI GGTGA 5 cut(s) 95, 218, 389, 467, 589
AvaII GGWCC 1 cut(s) 837
AvrII CCTAGG 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 668
BanI GGYRCC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 314
BbrPI CACGTG 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 173
BbvCI CCTCAGC 1 cut(s) 714
BbvI GCAGC 6 cut(s) 477, 553, 604, 625, 822, 840
BccI CCATC 6 cut(s) 106, 118, 319, 343, 436, 568
BcgI CGANNNNNNTGC 2 cut(s) 799, 833
BfaI CTAG 3 cut(s) 74, 119, 905
BfmI CTRYAG 1 cut(s) 567
BfuAI ACCTGC 1 cut(s) 679
BglI GCCNNNNNGGC 1 cut(s) 300
BisI GCNGC 6 cut(s) 491, 567, 593, 639, 811, 854
BlnI CCTAGG 1 cut(s) 73
BlsI GCNGC 6 cut(s) 492, 568, 594, 640, 812, 855
Bme18I GGWCC 1 cut(s) 837
BmgT120I GGNCC 1 cut(s) 837
BmiI GGNNCC 4 cut(s) 293, 777, 838, 839
BmrI ACTGGG 2 cut(s) 483, 764
BmsI GCATC 2 cut(s) 625, 738
BmuI ACTGGG 2 cut(s) 483, 764
BpiI GAAGAC 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 671
Bpu10I CCTNAGC 1 cut(s) 714
BsaAI YACGTR 2 cut(s) 283, 548
BsaJI CCNNGG 4 cut(s) 73, 102, 295, 596
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 3 cut(s) 180, 478, 770
BseDI CCNNGG 4 cut(s) 73, 102, 295, 596
BseGI GGATG 3 cut(s) 98, 640, 739
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 3 cut(s) 206, 386, 705
BseNI ACTGG 3 cut(s) 180, 478, 770
BseRI GAGGAG 1 cut(s) 668
BseSI GKGCMC 1 cut(s) 668
BseXI GCAGC 6 cut(s) 477, 553, 604, 625, 822, 840
BsgI GTGCAG 1 cut(s) 650
Bsh1236I CGCG 2 cut(s) 670, 763
BshFI GGCC 1 cut(s) 506
BshNI GGYRCC 1 cut(s) 291
BslFI GGGAC 3 cut(s) 732, 753, 823
BslI CCNNNNNNNGG 1 cut(s) 79
BsmFI GGGAC 3 cut(s) 732, 753, 823
BsnI GGCC 1 cut(s) 506
Bsp1286I GDGCHC 2 cut(s) 314, 668
Bsp143I GATC 2 cut(s) 94, 754
BspACI CCGC 2 cut(s) 113, 196
BspANI GGCC 1 cut(s) 506
BspCNI CTCAG 3 cut(s) 205, 387, 706
BspFNI CGCG 2 cut(s) 670, 763
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 4 cut(s) 293, 777, 838, 839
BspMAI CTGCAG 1 cut(s) 571
BspMI ACCTGC 1 cut(s) 679
BspPI GGATC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 291
BsrI ACTGG 3 cut(s) 180, 478, 770
BssECI CCNNGG 4 cut(s) 73, 102, 295, 596
BssMI GATC 2 cut(s) 94, 754
BssT1I CCWWGG 3 cut(s) 73, 102, 295
Bst4CI ACNGT 3 cut(s) 341, 377, 832
BstBAI YACGTR 2 cut(s) 283, 548
BstC8I GCNNGC 2 cut(s) 51, 668
BstDEI CTNAG 3 cut(s) 192, 395, 714
BstF5I GGATG 3 cut(s) 98, 640, 739
BstFNI CGCG 2 cut(s) 670, 763
BstKTI GATC 2 cut(s) 97, 757
BstMBI GATC 2 cut(s) 94, 754
BstMWI GCNNNNNNNGC 3 cut(s) 300, 309, 589
BstNSI RCATGY 1 cut(s) 28
BstSFI CTRYAG 1 cut(s) 567
BstSLI GKGCMC 1 cut(s) 668
BstSNI TACGTA 1 cut(s) 548
BstUI CGCG 2 cut(s) 670, 763
BstV1I GCAGC 6 cut(s) 477, 553, 604, 625, 822, 840
BstV2I GAAGAC 1 cut(s) 173
BsuRI GGCC 1 cut(s) 506
BtgZI GCGATG 1 cut(s) 378
BtsCI GGATG 3 cut(s) 98, 640, 739
BtsIMutI CAGTG 1 cut(s) 777
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 2 cut(s) 51, 668
CciI TCATGA 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 837
CseI GACGC 2 cut(s) 729, 769
Csp6I GTAC 2 cut(s) 107, 821
CspCI CAANNNNNGTGG 2 cut(s) 504, 539
CviAII CATG 6 cut(s) 25, 274, 410, 439, 502, 661
CviQI GTAC 2 cut(s) 107, 821
DdeI CTNAG 3 cut(s) 192, 395, 714
DpnI GATC 2 cut(s) 96, 756
DpnII GATC 2 cut(s) 94, 754
EaeI YGGCCR 1 cut(s) 504
Eco105I TACGTA 1 cut(s) 548
Eco130I CCWWGG 3 cut(s) 73, 102, 295
Eco24I GRGCYC 1 cut(s) 314
Eco32I GATATC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 837
Eco72I CACGTG 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 837
EcoRI GAATTC 2 cut(s) 679, 898
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 3 cut(s) 73, 102, 295
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 3 cut(s) 73, 102, 295
FaeI CATG 6 cut(s) 28, 277, 413, 442, 505, 664
FaqI GGGAC 3 cut(s) 732, 753, 823
FatI CATG 6 cut(s) 24, 273, 409, 438, 501, 660
FauI CCCGC 2 cut(s) 120, 189
Fnu4HI GCNGC 6 cut(s) 491, 567, 593, 639, 811, 854
FokI GGATG 3 cut(s) 85, 647, 746
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 6 cut(s) 491, 567, 593, 639, 811, 854
FspBI CTAG 3 cut(s) 74, 119, 905
GluI GCNGC 6 cut(s) 491, 567, 593, 639, 811, 854
GsuI CTGGAG 1 cut(s) 671
HaeIII GGCC 1 cut(s) 506
HgaI GACGC 2 cut(s) 729, 769
Hin1II CATG 6 cut(s) 28, 277, 413, 442, 505, 664
HinfI GANTC 2 cut(s) 200, 269
HphI GGTGA 5 cut(s) 95, 218, 389, 467, 589
Hpy166II GTNNAC 2 cut(s) 19, 526
Hpy188I TCNGA 1 cut(s) 759
Hpy188III TCNNGA 2 cut(s) 307, 410
Hpy8I GTNNAC 2 cut(s) 19, 526
HpyAV CCTTC 5 cut(s) 394, 480, 693, 800, 826
HpyCH4III ACNGT 3 cut(s) 341, 377, 832
HpyCH4IV ACGT 2 cut(s) 282, 547
HpyCH4V TGCA 7 cut(s) 38, 53, 241, 493, 569, 631, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 300, 309, 589
HpyF3I CTNAG 3 cut(s) 192, 395, 714
HpySE526I ACGT 2 cut(s) 282, 547
Hsp92II CATG 6 cut(s) 28, 277, 413, 442, 505, 664
KflI GGGWCCC 1 cut(s) 837
Kzo9I GATC 2 cut(s) 94, 754
Lsp1109I GCAGC 6 cut(s) 477, 553, 604, 625, 822, 840
LweI GCATC 2 cut(s) 625, 738
MaeI CTAG 3 cut(s) 74, 119, 905
MaeII ACGT 2 cut(s) 282, 547
MaeIII GTNAC 7 cut(s) 83, 184, 206, 335, 455, 543, 691
MalI GATC 2 cut(s) 96, 756
MboI GATC 2 cut(s) 94, 754
MboII GAAGA 3 cut(s) 151, 178, 568
MfeI CAATTG 1 cut(s) 315
MhlI GDGCHC 2 cut(s) 314, 668
MluCI AATT 6 cut(s) 4, 145, 216, 315, 679, 898
MluI ACGCGT 1 cut(s) 761
MmeI TCCRAC 2 cut(s) 463, 533
MseI TTAA 1 cut(s) 450
MspA1I CMGCKG 1 cut(s) 196
MunI CAATTG 1 cut(s) 315
MvnI CGCG 2 cut(s) 670, 763
MwoI GCNNNNNNNGC 3 cut(s) 300, 309, 589
NdeII GATC 2 cut(s) 94, 754
NlaIII CATG 6 cut(s) 28, 277, 413, 442, 505, 664
NlaIV GGNNCC 4 cut(s) 293, 777, 838, 839
NmeAIII GCCGAG 2 cut(s) 532, 621
NmuCI GTSAC 4 cut(s) 83, 184, 206, 455
NspI RCATGY 1 cut(s) 28
PagI TCATGA 1 cut(s) 409
PciI ACATGT 1 cut(s) 24
PfeI GAWTC 2 cut(s) 200, 269
PflFI GACNNNGTC 1 cut(s) 89
PkrI GCNGC 6 cut(s) 492, 568, 594, 640, 812, 855
PmaCI CACGTG 1 cut(s) 283
PmlI CACGTG 1 cut(s) 283
Ppu21I YACGTR 2 cut(s) 283, 548
PpuMI RGGWCCY 1 cut(s) 837
PscI ACATGT 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 837
PspCI CACGTG 1 cut(s) 283
PspN4I GGNNCC 4 cut(s) 293, 777, 838, 839
PspPI GGNCC 1 cut(s) 837
PspPPI RGGWCCY 1 cut(s) 837
PstI CTGCAG 1 cut(s) 571
PsyI GACNNNGTC 1 cut(s) 89
RsaI GTAC 2 cut(s) 108, 822
RsaNI GTAC 2 cut(s) 107, 821
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 6 cut(s) 491, 567, 593, 639, 811, 854
Sau3AI GATC 2 cut(s) 94, 754
Sau96I GGNCC 1 cut(s) 837
SduI GDGCHC 2 cut(s) 314, 668
SfaNI GCATC 2 cut(s) 625, 738
SfcI CTRYAG 1 cut(s) 567
SinI GGWCC 1 cut(s) 837
SnaBI TACGTA 1 cut(s) 548
Sse9I AATT 6 cut(s) 4, 145, 216, 315, 679, 898
SsiI CCGC 2 cut(s) 113, 196
SspMI CTAG 3 cut(s) 74, 119, 905
StyI CCWWGG 3 cut(s) 73, 102, 295
TaaI ACNGT 3 cut(s) 341, 377, 832
TaiI ACGT 2 cut(s) 285, 550
TaqI TCGA 1 cut(s) 93
TasI AATT 6 cut(s) 4, 145, 216, 315, 679, 898
TfiI GAWTC 2 cut(s) 200, 269
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 1 cut(s) 777
TseFI GTSAC 4 cut(s) 83, 184, 206, 455
TseI GCWGC 6 cut(s) 490, 566, 592, 638, 810, 853
Tsp45I GTSAC 4 cut(s) 83, 184, 206, 455
TspDTI ATGAA 4 cut(s) 17, 144, 398, 692
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 1 cut(s) 777
Tth111I GACNNNGTC 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 837
XapI RAATTY 2 cut(s) 679, 898
XceI RCATGY 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XmaJI CCTAGG 1 cut(s) 73
XspI CTAG 3 cut(s) 74, 119, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.