Rmu_sc0025304.1_g000001

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025304.1
OG0000124
Physical Location & Seq
Reverse (-)
137 .. 708
572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025304.1_g000001.1.cds

Sequence Viewer

Length: 378 bp
atggatgcggatagggcacagggggaagaagacgaggaatggatcccggatcaggatgttgaagatgaagatgaggaacctcatatggaacgggtgaacccaggatggcgtactttcaggtcggacaaatgcacaattcaaagatgtcactgttatccgccggccaagtttgctcaggccacatttcccagaggagcagctgtgaagataaaggtccagaaatcagatggacgtgtctggaggatgaaagctgtcccatccaataccactcactacctaagtgctgggtactccaaattcagggaggctctgaaactgcccatagggtccacaatcgagctccatgtggttgacaggaacagaatagtgttcgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

125

Amino Acids

14.46

Weight (kDa)

5.83

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 158
AclWI GGATC 3 cut(s) 37, 50, 57
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 296
AfaI GTAC 2 cut(s) 112, 290
AfiI CCNNNNNNNGG 2 cut(s) 52, 300
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 2 cut(s) 62, 140
AjiI CACGTC 1 cut(s) 233
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 3 cut(s) 200, 251, 340
AluI AGCT 3 cut(s) 200, 251, 340
Alw21I GWGCWC 1 cut(s) 342
AlwI GGATC 3 cut(s) 37, 50, 57
AoxI GGCC 2 cut(s) 162, 177
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 214, 327
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 2 cut(s) 214, 327
BaeGI GKGCMC 1 cut(s) 19
BamHI GGATCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 209
BccI CCATC 3 cut(s) 99, 221, 265
BciT130I CCWGG 1 cut(s) 102
BcnI CCSGG 1 cut(s) 47
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 2 cut(s) 47, 102
Bme18I GGWCC 2 cut(s) 214, 327
BmgBI CACGTC 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 214, 327
BmiI GGNNCC 3 cut(s) 44, 78, 328
BmrFI CCNGG 2 cut(s) 47, 102
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 259
Bpu10I CCTNAGC 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 300
Bse118I RCCGGY 1 cut(s) 160
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 5 cut(s) 10, 61, 110, 249, 257
BseLI CCNNNNNNNGG 2 cut(s) 52, 300
BseMII CTCAG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 207
BseSI GKGCMC 1 cut(s) 19
BseXI GCAGC 1 cut(s) 209
BseYI CCCAGC 1 cut(s) 284
BshFI GGCC 2 cut(s) 164, 179
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 2 cut(s) 47, 161
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 52, 300
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 2 cut(s) 164, 179
Bsp1286I GDGCHC 2 cut(s) 19, 342
Bsp143I GATC 2 cut(s) 42, 49
BspACI CCGC 2 cut(s) 8, 158
BspANI GGCC 2 cut(s) 164, 179
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 3 cut(s) 44, 78, 328
BspPI GGATC 3 cut(s) 37, 50, 57
BsrFI RCCGGY 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 42, 49
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 174, 278
BstF5I GGATG 5 cut(s) 10, 61, 110, 249, 257
BstKTI GATC 2 cut(s) 45, 52
BstMBI GATC 2 cut(s) 42, 49
BstMWI GCNNNNNNNGC 2 cut(s) 14, 170
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 2 cut(s) 45, 100
BstSLI GKGCMC 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuRI GGCC 2 cut(s) 164, 179
BtrI CACGTC 1 cut(s) 233
BtsCI GGATG 5 cut(s) 10, 61, 110, 249, 257
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 214, 327
Csp6I GTAC 2 cut(s) 111, 289
CviAII CATG 1 cut(s) 344
CviJI RGCY 6 cut(s) 164, 179, 200, 251, 308, 340
CviKI_1 RGCY 6 cut(s) 164, 179, 200, 251, 308, 340
CviQI GTAC 2 cut(s) 111, 289
DdeI CTNAG 2 cut(s) 174, 278
DpnI GATC 2 cut(s) 44, 51
DpnII GATC 2 cut(s) 42, 49
EaeI YGGCCR 1 cut(s) 162
EciI GGCGGA 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 342
Eco47I GGWCC 2 cut(s) 214, 327
Eco53kI GAGCTC 1 cut(s) 340
EcoICRI GAGCTC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 342
FaeI CATG 1 cut(s) 347
FaiI YATR 4 cut(s) 84, 86, 323, 345
FaqI GGGAC 1 cut(s) 239
FatI CATG 1 cut(s) 343
FauNDI CATATG 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 5 cut(s) 17, 68, 117, 244, 256
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 198
GsaI CCCAGC 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 259
HaeIII GGCC 2 cut(s) 164, 179
HapII CCGG 2 cut(s) 47, 161
Hin1II CATG 1 cut(s) 347
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HpaII CCGG 2 cut(s) 47, 161
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 3 cut(s) 97, 330, 352
Hpy188I TCNGA 3 cut(s) 124, 226, 312
Hpy188III TCNNGA 3 cut(s) 53, 217, 238
Hpy8I GTNNAC 3 cut(s) 97, 330, 352
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 170
HpyF3I CTNAG 2 cut(s) 174, 278
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 1 cut(s) 347
KroI GCCGGC 1 cut(s) 160
KroNI GCCGGC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 42, 49
LmnI GCTCC 2 cut(s) 194, 345
Lsp1109I GCAGC 1 cut(s) 209
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 146
MalI GATC 2 cut(s) 44, 51
MboI GATC 2 cut(s) 42, 49
MboII GAAGA 5 cut(s) 38, 41, 74, 80, 217
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 2 cut(s) 19, 342
MluCI AATT 2 cut(s) 135, 296
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 6 cut(s) 28, 67, 90, 185, 234, 298
MroNI GCCGGC 1 cut(s) 160
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 2 cut(s) 47, 161
MspR9I CCNGG 2 cut(s) 47, 102
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 14, 170
NaeI GCCGGC 1 cut(s) 162
NciI CCSGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 84
NdeII GATC 2 cut(s) 42, 49
NgoMIV GCCGGC 1 cut(s) 160
NlaIII CATG 1 cut(s) 347
NlaIV GGNNCC 3 cut(s) 44, 78, 328
NmuCI GTSAC 1 cut(s) 146
PdiI GCCGGC 1 cut(s) 162
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 1 cut(s) 199
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 3 cut(s) 44, 78, 328
PspPI GGNCC 2 cut(s) 214, 327
PsuI RGATCY 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 2 cut(s) 112, 290
RsaNI GTAC 2 cut(s) 111, 289
SacI GAGCTC 1 cut(s) 342
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 2 cut(s) 42, 49
Sau96I GGNCC 2 cut(s) 214, 327
ScrFI CCNGG 2 cut(s) 47, 102
SduI GDGCHC 2 cut(s) 19, 342
SetI ASST 8 cut(s) 82, 122, 202, 216, 235, 253, 279, 342
SinI GGWCC 2 cut(s) 214, 327
Sse9I AATT 2 cut(s) 135, 296
SsiI CCGC 2 cut(s) 8, 158
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 2 cut(s) 45, 100
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 235
TaqI TCGA 2 cut(s) 336, 372
TasI AATT 2 cut(s) 135, 296
TscAI CASTG 1 cut(s) 155
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 81, 260
TspRI CASTG 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 214, 327
XapI RAATTY 1 cut(s) 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.