Rh6CG151000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000124
Physical Location & Seq
Reverse (-)
19759669 .. 19759962
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG151000.1

Sequence Viewer

Length: 294 bp
ATGTTAGGGGAAGAAGCCAGCCGCAAAGGCAAGGGTGTGAAGCGAACTCATTCACTTGCTCTCAGTGATAACAGAAGTGATAAATACGACTACATCAAGTACGTAATGGGGTATACGGGAATGGATGATGAAACTTTTGGGACCATTGGACCATTTGTTGCCTGTCCATACAGATTGAAGCTGCCAATACAAGATCTGGACGTCGGTATTATTGATTTTGTATTTTTGGGCGGAAAGGTGCTGACAATAGACGAAATAAGGTTAGTTACTAAACGGATGTATTATTTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.07

Weight (kDa)

7.8

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 204
AccI GTMKAC 1 cut(s) 113
AciI CCGC 2 cut(s) 22, 231
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 1 cut(s) 101
AgsI TTSAA 2 cut(s) 178, 289
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
ApeKI GCWGC 1 cut(s) 181
Asp700I GAANNNNTTC 1 cut(s) 49
AspS9I GGNCC 2 cut(s) 141, 149
AvaII GGWCC 2 cut(s) 141, 149
BbvI GCAGC 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 27
BglII AGATCT 1 cut(s) 193
BisI GCNGC 2 cut(s) 22, 182
BlsI GCNGC 2 cut(s) 23, 183
Bme18I GGWCC 2 cut(s) 141, 149
BmgT120I GGNCC 2 cut(s) 141, 149
BmiI GGNNCC 1 cut(s) 142
BsaAI YACGTR 1 cut(s) 103
BsaHI GRCGYC 1 cut(s) 201
BseGI GGATG 2 cut(s) 130, 282
BseMII CTCAG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 168
BslFI GGGAC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 2 cut(s) 22, 231
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 142
BssMI GATC 1 cut(s) 193
BssNAI GTATAC 1 cut(s) 114
BssNI GRCGYC 1 cut(s) 201
Bst1107I GTATAC 1 cut(s) 114
BstACI GRCGYC 1 cut(s) 201
BstBAI YACGTR 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 2 cut(s) 130, 282
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstSNI TACGTA 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BstZ17I GTATAC 1 cut(s) 114
BtsCI GGATG 2 cut(s) 130, 282
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 141, 149
Csp6I GTAC 1 cut(s) 100
CviJI RGCY 3 cut(s) 17, 21, 181
CviKI_1 RGCY 3 cut(s) 17, 21, 181
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 62
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
EciI GGCGGA 1 cut(s) 246
Eco105I TACGTA 1 cut(s) 103
Eco47I GGWCC 2 cut(s) 141, 149
FaiI YATR 2 cut(s) 114, 169
FaqI GGGAC 1 cut(s) 154
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 2 cut(s) 22, 182
FokI GGATG 2 cut(s) 137, 289
Fsp4HI GCNGC 2 cut(s) 22, 182
GluI GCNGC 2 cut(s) 22, 182
Hin1I GRCGYC 1 cut(s) 201
Hpy166II GTNNAC 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 114
Hpy99I CGWCG 1 cut(s) 206
HpyCH4IV ACGT 2 cut(s) 102, 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 2 cut(s) 102, 201
Hsp92I GRCGYC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 3 cut(s) 31, 175, 182
Lsp1109I GCAGC 1 cut(s) 168
MaeII ACGT 2 cut(s) 102, 201
MaeIII GTNAC 1 cut(s) 265
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 1 cut(s) 23
MflI RGATCY 1 cut(s) 193
MluCI AATT 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 49
MseI TTAA 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 27
NdeII GATC 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 49
PkrI GCNGC 2 cut(s) 23, 183
Ppu21I YACGTR 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 2 cut(s) 141, 149
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 292
SatI GCNGC 2 cut(s) 22, 182
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 2 cut(s) 141, 149
SetI ASST 5 cut(s) 105, 183, 204, 240, 263
SgeI CNNG 8 cut(s) 30, 43, 68, 109, 129, 174, 203, 209
SinI GGWCC 2 cut(s) 141, 149
SnaBI TACGTA 1 cut(s) 103
Sse9I AATT 1 cut(s) 289
SsiI CCGC 2 cut(s) 22, 231
TaiI ACGT 2 cut(s) 105, 204
TasI AATT 1 cut(s) 289
TauI GCSGC 1 cut(s) 24
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 144
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 1 cut(s) 70
VpaK11BI GGWCC 2 cut(s) 141, 149
XmiI GTMKAC 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 49
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.