Rw6G016590

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
32767520 .. 32768860
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016590.1

Sequence Viewer

Length: 909 bp
ATGGCTACCCTCCCAGGCCAACCTTTACAGCATGCTCAAATGCCGTACTTTGTGACCATCGTGGATACTACGGTAGCCACAAATCAGTCACTGAAAATTCCAAGTCTTTTTCGGGAGATTCATATGAAAGGAGATCACCGGAAGGAAGCAACTCTGCTGTTAGAAGGTTTACCTGGAAATGCATGGAAGGTGCGTGTCGTTCATGAAGATAATGAAAAGTGTCTGGCTGGAGGATGGGTTCAGTTTGTACGTGTCACTTGCGGTGTACAACGAAAGGTAACTCTTTTGTTCAAGTACGAAGGACGCATGACATTTACTGTGATACGTTTCGGAGAGGAGGGCCAGGTGCTGTACTTTCTTCCTTGGTTGACTGCAACCAACCCATGGAACAATTGTAAACAAATCATTGAAATGTTTCACGGATTTGCGCTGAACACATGGGGACCAGGAGACATGTCGCCCGCAATCGGATATGGTTCGCTGTTTCTGAGACTAATAGAGGATGGGGTGATTATGGGTAAGGTAACATTTGAGCTGCATCACAACAGAGGACCATATTGGATGACAGAAGCCACCCTCATAGATGATGAACTCGTGTTCGGTCATGGATGGCAGCATTTTCACAACGCCATTGCTCTGGACAGGAATAAATGTGCATTGTTCAAATATGAAGGAAATTTGGCATTCACTGTAATAGTGTTCAACTTGCCCTTCGGAACCGTTGCAATGGATGATATTGCTGACCCAAGAAAAGGGGGTTATGAGGCCGAGATACCGGCGGTCCAGCATGATCCGGTGGCTCTAGCAATTCAGGAAAATGTACAAGAAGAAGTCCTTGTACATGACAACGTGTTTGCCTTACCGTCATGCTTATTGAGGATCCAAAGGGGTCATGGGGTAAGCACCTGA

Protein Analysis

302

Amino Acids

34.03

Weight (kDa)

5.99

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 18 - 106 3.7e-08 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 384
AciI CCGC 3 cut(s) 261, 462, 779
AclWI GGATC 3 cut(s) 785, 874, 887
AcsI RAATTY 2 cut(s) 96, 676
AfaI GTAC 7 cut(s) 47, 249, 267, 296, 353, 822, 840
AfiI CCNNNNNNNGG 3 cut(s) 384, 467, 752
AflIII ACRYGT 3 cut(s) 250, 453, 849
AgsI TTSAA 4 cut(s) 292, 410, 664, 703
AjnI CCWGG 4 cut(s) 13, 172, 342, 445
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 1 cut(s) 535
AluI AGCT 1 cut(s) 535
Alw26I GTCTC 2 cut(s) 444, 484
AlwI GGATC 3 cut(s) 785, 874, 887
AlwNI CAGNNNCTG 2 cut(s) 91, 349
AoxI GGCC 3 cut(s) 16, 340, 765
ApeKI GCWGC 2 cut(s) 535, 613
ApoI RAATTY 2 cut(s) 96, 676
ArsI GACNNNNNNTTYG 2 cut(s) 836, 868
Asp700I GAANNNNTTC 1 cut(s) 414
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 4 cut(s) 340, 443, 551, 781
AsuHPI GGTGA 2 cut(s) 128, 520
AvaII GGWCC 3 cut(s) 443, 551, 781
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
BamHI GGATCC 1 cut(s) 879
BarI GAAGNNNNNNTAC 2 cut(s) 822, 854
BauI CACGAG 1 cut(s) 593
BbvI GCAGC 2 cut(s) 522, 625
BccI CCATC 4 cut(s) 65, 228, 497, 603
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 4 cut(s) 15, 174, 344, 447
BciVI GTATCC 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 444, 484
BfaI CTAG 1 cut(s) 803
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 2 cut(s) 536, 614
BlsI GCNGC 2 cut(s) 537, 615
Bme1390I CCNGG 4 cut(s) 15, 174, 344, 447
Bme18I GGWCC 3 cut(s) 443, 551, 781
BmgT120I GGNCC 4 cut(s) 340, 443, 551, 781
BmiI GGNNCC 3 cut(s) 444, 718, 881
BmrFI CCNGG 4 cut(s) 15, 174, 344, 447
BmsI GCATC 1 cut(s) 547
BpmI CTGGAG 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 13, 362, 383
BsaWI WCCGGW 2 cut(s) 138, 793
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 3 cut(s) 384, 467, 752
Bse118I RCCGGY 1 cut(s) 775
Bse3DI GCAATG 2 cut(s) 630, 732
BseBI CCWGG 4 cut(s) 15, 174, 344, 447
BseDI CCNNGG 3 cut(s) 13, 362, 383
BseGI GGATG 5 cut(s) 239, 508, 567, 614, 736
BseLI CCNNNNNNNGG 3 cut(s) 384, 467, 752
BseMI GCAATG 2 cut(s) 630, 732
BseMII CTCAG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 2 cut(s) 522, 625
BshFI GGCC 3 cut(s) 18, 342, 767
BsiSI CCGG 3 cut(s) 139, 776, 794
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 3 cut(s) 384, 467, 752
BsmAI GTCTC 2 cut(s) 444, 484
BsmFI GGGAC 1 cut(s) 456
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 3 cut(s) 18, 342, 767
Bsp1407I TGTACA 3 cut(s) 265, 820, 838
Bsp143I GATC 3 cut(s) 133, 790, 879
Bsp19I CCATGG 1 cut(s) 383
BspACI CCGC 3 cut(s) 261, 462, 779
BspANI GGCC 3 cut(s) 18, 342, 767
BspCNI CTCAG 1 cut(s) 480
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 3 cut(s) 444, 718, 881
BspPI GGATC 3 cut(s) 785, 874, 887
BsrDI GCAATG 2 cut(s) 630, 732
BsrFI RCCGGY 1 cut(s) 775
BsrGI TGTACA 3 cut(s) 265, 820, 838
BssAI RCCGGY 1 cut(s) 775
BssECI CCNNGG 3 cut(s) 13, 362, 383
BssMI GATC 3 cut(s) 133, 790, 879
BssSI CACGAG 1 cut(s) 593
BssT1I CCWWGG 2 cut(s) 362, 383
Bst2BI CACGAG 1 cut(s) 593
Bst2UI CCWGG 4 cut(s) 15, 174, 344, 447
Bst4CI ACNGT 5 cut(s) 73, 319, 691, 721, 864
BstAUI TGTACA 3 cut(s) 265, 820, 838
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 33, 462
BstDEI CTNAG 1 cut(s) 488
BstDSI CCRYGG 1 cut(s) 383
BstF5I GGATG 5 cut(s) 239, 508, 567, 614, 736
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 3 cut(s) 136, 793, 882
BstMAI GTCTC 2 cut(s) 444, 484
BstMBI GATC 3 cut(s) 133, 790, 879
BstNI CCWGG 4 cut(s) 15, 174, 344, 447
BstNSI RCATGY 2 cut(s) 35, 457
BstSCI CCNGG 4 cut(s) 13, 172, 342, 445
BstV1I GCAGC 2 cut(s) 522, 625
BstX2I RGATCY 1 cut(s) 879
BstXI CCANNNNNNTGG 1 cut(s) 637
BstYI RGATCY 1 cut(s) 879
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 3 cut(s) 18, 342, 767
BtgI CCRYGG 1 cut(s) 383
BtsCI GGATG 5 cut(s) 239, 508, 567, 614, 736
BtsIMutI CAGTG 2 cut(s) 89, 687
Cac8I GCNNGC 2 cut(s) 33, 462
CaiI CAGNNNCTG 2 cut(s) 91, 349
CciI TCATGA 1 cut(s) 202
CfoI GCGC 1 cut(s) 430
Cfr10I RCCGGY 1 cut(s) 775
Cfr13I GGNCC 4 cut(s) 340, 443, 551, 781
CseI GACGC 1 cut(s) 312
Csp6I GTAC 7 cut(s) 46, 248, 266, 295, 352, 821, 839
CviJI RGCY 9 cut(s) 5, 18, 77, 227, 342, 535, 572, 767, 800
CviKI_1 RGCY 9 cut(s) 5, 18, 77, 227, 342, 535, 572, 767, 800
CviQI GTAC 7 cut(s) 46, 248, 266, 295, 352, 821, 839
DdeI CTNAG 1 cut(s) 488
DpnI GATC 3 cut(s) 135, 792, 881
DpnII GATC 3 cut(s) 133, 790, 879
Eco130I CCWWGG 2 cut(s) 362, 383
Eco47I GGWCC 3 cut(s) 443, 551, 781
EcoRII CCWGG 4 cut(s) 13, 172, 342, 445
EcoT14I CCWWGG 2 cut(s) 362, 383
EcoT22I ATGCAT 1 cut(s) 184
ErhI CCWWGG 2 cut(s) 362, 383
FalI AAGNNNNNCTT 2 cut(s) 819, 851
FaqI GGGAC 1 cut(s) 456
FauI CCCGC 1 cut(s) 469
FauNDI CATATG 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 536, 614
FokI GGATG 5 cut(s) 246, 515, 574, 621, 743
Fsp4HI GCNGC 2 cut(s) 536, 614
FspBI CTAG 1 cut(s) 803
GlaI GCGC 1 cut(s) 429
GluI GCNGC 2 cut(s) 536, 614
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 3 cut(s) 18, 342, 767
HapII CCGG 3 cut(s) 139, 776, 794
HgaI GACGC 1 cut(s) 312
HhaI GCGC 1 cut(s) 430
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HinfI GANTC 1 cut(s) 118
HpaII CCGG 3 cut(s) 139, 776, 794
HphI GGTGA 2 cut(s) 128, 520
Hpy166II GTNNAC 4 cut(s) 170, 266, 369, 398
Hpy188I TCNGA 4 cut(s) 332, 470, 489, 716
Hpy188III TCNNGA 4 cut(s) 113, 203, 638, 812
Hpy8I GTNNAC 4 cut(s) 170, 266, 369, 398
HpyAV CCTTC 6 cut(s) 136, 158, 181, 293, 665, 721
HpyCH4III ACNGT 5 cut(s) 73, 319, 691, 721, 864
HpyCH4IV ACGT 3 cut(s) 250, 325, 849
HpyCH4V TGCA 5 cut(s) 182, 374, 538, 656, 725
HpyF3I CTNAG 1 cut(s) 488
HpySE526I ACGT 3 cut(s) 250, 325, 849
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 3 cut(s) 133, 790, 879
Lsp1109I GCAGC 2 cut(s) 522, 625
LweI GCATC 1 cut(s) 547
MaeI CTAG 1 cut(s) 803
MaeII ACGT 3 cut(s) 250, 325, 849
MaeIII GTNAC 5 cut(s) 52, 87, 253, 277, 523
MalI GATC 3 cut(s) 135, 792, 881
MboI GATC 3 cut(s) 133, 790, 879
MboII GAAGA 3 cut(s) 218, 350, 839
MfeI CAATTG 1 cut(s) 391
MflI RGATCY 1 cut(s) 879
MluCI AATT 4 cut(s) 96, 391, 676, 807
MnlI CCTC 9 cut(s) 20, 224, 328, 331, 493, 542, 587, 757, 870
Mph1103I ATGCAT 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 414
MslI CAYNNNNRTG 1 cut(s) 410
MspI CCGG 3 cut(s) 139, 776, 794
MspR9I CCNGG 4 cut(s) 15, 174, 344, 447
MunI CAATTG 1 cut(s) 391
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 4 cut(s) 15, 174, 344, 447
NcoI CCATGG 1 cut(s) 383
NdeI CATATG 1 cut(s) 123
NdeII GATC 3 cut(s) 133, 790, 879
NlaIV GGNNCC 3 cut(s) 444, 718, 881
NmeAIII GCCGAG 1 cut(s) 793
NmuCI GTSAC 3 cut(s) 52, 87, 253
NsiI ATGCAT 1 cut(s) 184
NspI RCATGY 2 cut(s) 35, 457
PaeI GCATGC 1 cut(s) 35
PagI TCATGA 1 cut(s) 202
PciI ACATGT 1 cut(s) 453
PctI GAATGC 1 cut(s) 683
PdmI GAANNNNTTC 1 cut(s) 414
PfeI GAWTC 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 384
PkrI GCNGC 2 cut(s) 537, 615
Ppu21I YACGTR 1 cut(s) 251
PscI ACATGT 1 cut(s) 453
Psp6I CCWGG 4 cut(s) 13, 172, 342, 445
PspGI CCWGG 4 cut(s) 13, 172, 342, 445
PspN4I GGNNCC 3 cut(s) 444, 718, 881
PspPI GGNCC 4 cut(s) 340, 443, 551, 781
PstNI CAGNNNCTG 2 cut(s) 91, 349
PsuI RGATCY 1 cut(s) 879
RsaI GTAC 7 cut(s) 47, 249, 267, 296, 353, 822, 840
RsaNI GTAC 7 cut(s) 46, 248, 266, 295, 352, 821, 839
RseI CAYNNNNRTG 1 cut(s) 410
SatI GCNGC 2 cut(s) 536, 614
Sau3AI GATC 3 cut(s) 133, 790, 879
Sau96I GGNCC 4 cut(s) 340, 443, 551, 781
ScrFI CCNGG 4 cut(s) 15, 174, 344, 447
SfaNI GCATC 1 cut(s) 547
SinI GGWCC 3 cut(s) 443, 551, 781
SmiMI CAYNNNNRTG 1 cut(s) 410
SphI GCATGC 1 cut(s) 35
Sse9I AATT 4 cut(s) 96, 391, 676, 807
SsiI CCGC 3 cut(s) 261, 462, 779
SspMI CTAG 1 cut(s) 803
StyD4I CCNGG 4 cut(s) 13, 172, 342, 445
StyI CCWWGG 2 cut(s) 362, 383
TaaI ACNGT 5 cut(s) 73, 319, 691, 721, 864
TaiI ACGT 3 cut(s) 253, 328, 852
TaqII GACCGA 1 cut(s) 590
TasI AATT 4 cut(s) 96, 391, 676, 807
TatI WGTACW 4 cut(s) 265, 351, 820, 838
TfiI GAWTC 1 cut(s) 118
TscAI CASTG 2 cut(s) 96, 694
TseFI GTSAC 3 cut(s) 52, 87, 253
TseI GCWGC 2 cut(s) 535, 613
Tsp45I GTSAC 3 cut(s) 52, 87, 253
TspDTI ATGAA 7 cut(s) 110, 140, 191, 219, 228, 603, 684
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 2 cut(s) 96, 694
Van91I CCANNNNNTGG 1 cut(s) 384
VpaK11BI GGWCC 3 cut(s) 443, 551, 781
XapI RAATTY 2 cut(s) 96, 676
XceI RCATGY 2 cut(s) 35, 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 890
XmnI GAANNNNTTC 1 cut(s) 414
XspI CTAG 1 cut(s) 803
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.