Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 18 - 106 | 3.7e-08 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 384 |
| AciI | CCGC | 3 cut(s) | 261, 462, 779 |
| AclWI | GGATC | 3 cut(s) | 785, 874, 887 |
| AcsI | RAATTY | 2 cut(s) | 96, 676 |
| AfaI | GTAC | 7 cut(s) | 47, 249, 267, 296, 353, 822, 840 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 384, 467, 752 |
| AflIII | ACRYGT | 3 cut(s) | 250, 453, 849 |
| AgsI | TTSAA | 4 cut(s) | 292, 410, 664, 703 |
| AjnI | CCWGG | 4 cut(s) | 13, 172, 342, 445 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 222, 254 |
| AluBI | AGCT | 1 cut(s) | 535 |
| AluI | AGCT | 1 cut(s) | 535 |
| Alw26I | GTCTC | 2 cut(s) | 444, 484 |
| AlwI | GGATC | 3 cut(s) | 785, 874, 887 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 91, 349 |
| AoxI | GGCC | 3 cut(s) | 16, 340, 765 |
| ApeKI | GCWGC | 2 cut(s) | 535, 613 |
| ApoI | RAATTY | 2 cut(s) | 96, 676 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 836, 868 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 414 |
| AspLEI | GCGC | 1 cut(s) | 430 |
| AspS9I | GGNCC | 4 cut(s) | 340, 443, 551, 781 |
| AsuHPI | GGTGA | 2 cut(s) | 128, 520 |
| AvaII | GGWCC | 3 cut(s) | 443, 551, 781 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 57, 90 |
| BamHI | GGATCC | 1 cut(s) | 879 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 822, 854 |
| BauI | CACGAG | 1 cut(s) | 593 |
| BbvI | GCAGC | 2 cut(s) | 522, 625 |
| BccI | CCATC | 4 cut(s) | 65, 228, 497, 603 |
| BceAI | ACGGC | 1 cut(s) | 28 |
| BciT130I | CCWGG | 4 cut(s) | 15, 174, 344, 447 |
| BciVI | GTATCC | 1 cut(s) | 58 |
| BcoDI | GTCTC | 2 cut(s) | 444, 484 |
| BfaI | CTAG | 1 cut(s) | 803 |
| BfuI | GTATCC | 1 cut(s) | 58 |
| BisI | GCNGC | 2 cut(s) | 536, 614 |
| BlsI | GCNGC | 2 cut(s) | 537, 615 |
| Bme1390I | CCNGG | 4 cut(s) | 15, 174, 344, 447 |
| Bme18I | GGWCC | 3 cut(s) | 443, 551, 781 |
| BmgT120I | GGNCC | 4 cut(s) | 340, 443, 551, 781 |
| BmiI | GGNNCC | 3 cut(s) | 444, 718, 881 |
| BmrFI | CCNGG | 4 cut(s) | 15, 174, 344, 447 |
| BmsI | GCATC | 1 cut(s) | 547 |
| BpmI | CTGGAG | 1 cut(s) | 249 |
| BsaAI | YACGTR | 1 cut(s) | 251 |
| BsaJI | CCNNGG | 3 cut(s) | 13, 362, 383 |
| BsaWI | WCCGGW | 2 cut(s) | 138, 793 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 222, 252 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 384, 467, 752 |
| Bse118I | RCCGGY | 1 cut(s) | 775 |
| Bse3DI | GCAATG | 2 cut(s) | 630, 732 |
| BseBI | CCWGG | 4 cut(s) | 15, 174, 344, 447 |
| BseDI | CCNNGG | 3 cut(s) | 13, 362, 383 |
| BseGI | GGATG | 5 cut(s) | 239, 508, 567, 614, 736 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 384, 467, 752 |
| BseMI | GCAATG | 2 cut(s) | 630, 732 |
| BseMII | CTCAG | 1 cut(s) | 479 |
| BseRI | GAGGAG | 1 cut(s) | 350 |
| BseXI | GCAGC | 2 cut(s) | 522, 625 |
| BshFI | GGCC | 3 cut(s) | 18, 342, 767 |
| BsiSI | CCGG | 3 cut(s) | 139, 776, 794 |
| BslFI | GGGAC | 1 cut(s) | 456 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 384, 467, 752 |
| BsmAI | GTCTC | 2 cut(s) | 444, 484 |
| BsmFI | GGGAC | 1 cut(s) | 456 |
| BsmI | GAATGC | 1 cut(s) | 683 |
| BsnI | GGCC | 3 cut(s) | 18, 342, 767 |
| Bsp1407I | TGTACA | 3 cut(s) | 265, 820, 838 |
| Bsp143I | GATC | 3 cut(s) | 133, 790, 879 |
| Bsp19I | CCATGG | 1 cut(s) | 383 |
| BspACI | CCGC | 3 cut(s) | 261, 462, 779 |
| BspANI | GGCC | 3 cut(s) | 18, 342, 767 |
| BspCNI | CTCAG | 1 cut(s) | 480 |
| BspHI | TCATGA | 1 cut(s) | 202 |
| BspLI | GGNNCC | 3 cut(s) | 444, 718, 881 |
| BspPI | GGATC | 3 cut(s) | 785, 874, 887 |
| BsrDI | GCAATG | 2 cut(s) | 630, 732 |
| BsrFI | RCCGGY | 1 cut(s) | 775 |
| BsrGI | TGTACA | 3 cut(s) | 265, 820, 838 |
| BssAI | RCCGGY | 1 cut(s) | 775 |
| BssECI | CCNNGG | 3 cut(s) | 13, 362, 383 |
| BssMI | GATC | 3 cut(s) | 133, 790, 879 |
| BssSI | CACGAG | 1 cut(s) | 593 |
| BssT1I | CCWWGG | 2 cut(s) | 362, 383 |
| Bst2BI | CACGAG | 1 cut(s) | 593 |
| Bst2UI | CCWGG | 4 cut(s) | 15, 174, 344, 447 |
| Bst4CI | ACNGT | 5 cut(s) | 73, 319, 691, 721, 864 |
| BstAUI | TGTACA | 3 cut(s) | 265, 820, 838 |
| BstBAI | YACGTR | 1 cut(s) | 251 |
| BstC8I | GCNNGC | 2 cut(s) | 33, 462 |
| BstDEI | CTNAG | 1 cut(s) | 488 |
| BstDSI | CCRYGG | 1 cut(s) | 383 |
| BstF5I | GGATG | 5 cut(s) | 239, 508, 567, 614, 736 |
| BstHHI | GCGC | 1 cut(s) | 430 |
| BstKTI | GATC | 3 cut(s) | 136, 793, 882 |
| BstMAI | GTCTC | 2 cut(s) | 444, 484 |
| BstMBI | GATC | 3 cut(s) | 133, 790, 879 |
| BstNI | CCWGG | 4 cut(s) | 15, 174, 344, 447 |
| BstNSI | RCATGY | 2 cut(s) | 35, 457 |
| BstSCI | CCNGG | 4 cut(s) | 13, 172, 342, 445 |
| BstV1I | GCAGC | 2 cut(s) | 522, 625 |
| BstX2I | RGATCY | 1 cut(s) | 879 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 637 |
| BstYI | RGATCY | 1 cut(s) | 879 |
| BsuI | GTATCC | 1 cut(s) | 58 |
| BsuRI | GGCC | 3 cut(s) | 18, 342, 767 |
| BtgI | CCRYGG | 1 cut(s) | 383 |
| BtsCI | GGATG | 5 cut(s) | 239, 508, 567, 614, 736 |
| BtsIMutI | CAGTG | 2 cut(s) | 89, 687 |
| Cac8I | GCNNGC | 2 cut(s) | 33, 462 |
| CaiI | CAGNNNCTG | 2 cut(s) | 91, 349 |
| CciI | TCATGA | 1 cut(s) | 202 |
| CfoI | GCGC | 1 cut(s) | 430 |
| Cfr10I | RCCGGY | 1 cut(s) | 775 |
| Cfr13I | GGNCC | 4 cut(s) | 340, 443, 551, 781 |
| CseI | GACGC | 1 cut(s) | 312 |
| Csp6I | GTAC | 7 cut(s) | 46, 248, 266, 295, 352, 821, 839 |
| CviJI | RGCY | 9 cut(s) | 5, 18, 77, 227, 342, 535, 572, 767, 800 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 18, 77, 227, 342, 535, 572, 767, 800 |
| CviQI | GTAC | 7 cut(s) | 46, 248, 266, 295, 352, 821, 839 |
| DdeI | CTNAG | 1 cut(s) | 488 |
| DpnI | GATC | 3 cut(s) | 135, 792, 881 |
| DpnII | GATC | 3 cut(s) | 133, 790, 879 |
| Eco130I | CCWWGG | 2 cut(s) | 362, 383 |
| Eco47I | GGWCC | 3 cut(s) | 443, 551, 781 |
| EcoRII | CCWGG | 4 cut(s) | 13, 172, 342, 445 |
| EcoT14I | CCWWGG | 2 cut(s) | 362, 383 |
| EcoT22I | ATGCAT | 1 cut(s) | 184 |
| ErhI | CCWWGG | 2 cut(s) | 362, 383 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 819, 851 |
| FaqI | GGGAC | 1 cut(s) | 456 |
| FauI | CCCGC | 1 cut(s) | 469 |
| FauNDI | CATATG | 1 cut(s) | 123 |
| Fnu4HI | GCNGC | 2 cut(s) | 536, 614 |
| FokI | GGATG | 5 cut(s) | 246, 515, 574, 621, 743 |
| Fsp4HI | GCNGC | 2 cut(s) | 536, 614 |
| FspBI | CTAG | 1 cut(s) | 803 |
| GlaI | GCGC | 1 cut(s) | 429 |
| GluI | GCNGC | 2 cut(s) | 536, 614 |
| GsuI | CTGGAG | 1 cut(s) | 249 |
| HaeIII | GGCC | 3 cut(s) | 18, 342, 767 |
| HapII | CCGG | 3 cut(s) | 139, 776, 794 |
| HgaI | GACGC | 1 cut(s) | 312 |
| HhaI | GCGC | 1 cut(s) | 430 |
| Hin6I | GCGC | 1 cut(s) | 428 |
| HinP1I | GCGC | 1 cut(s) | 428 |
| HincII | GTYRAC | 1 cut(s) | 369 |
| HindII | GTYRAC | 1 cut(s) | 369 |
| HinfI | GANTC | 1 cut(s) | 118 |
| HpaII | CCGG | 3 cut(s) | 139, 776, 794 |
| HphI | GGTGA | 2 cut(s) | 128, 520 |
| Hpy166II | GTNNAC | 4 cut(s) | 170, 266, 369, 398 |
| Hpy188I | TCNGA | 4 cut(s) | 332, 470, 489, 716 |
| Hpy188III | TCNNGA | 4 cut(s) | 113, 203, 638, 812 |
| Hpy8I | GTNNAC | 4 cut(s) | 170, 266, 369, 398 |
| HpyAV | CCTTC | 6 cut(s) | 136, 158, 181, 293, 665, 721 |
| HpyCH4III | ACNGT | 5 cut(s) | 73, 319, 691, 721, 864 |
| HpyCH4IV | ACGT | 3 cut(s) | 250, 325, 849 |
| HpyCH4V | TGCA | 5 cut(s) | 182, 374, 538, 656, 725 |
| HpyF3I | CTNAG | 1 cut(s) | 488 |
| HpySE526I | ACGT | 3 cut(s) | 250, 325, 849 |
| HspAI | GCGC | 1 cut(s) | 428 |
| Kzo9I | GATC | 3 cut(s) | 133, 790, 879 |
| Lsp1109I | GCAGC | 2 cut(s) | 522, 625 |
| LweI | GCATC | 1 cut(s) | 547 |
| MaeI | CTAG | 1 cut(s) | 803 |
| MaeII | ACGT | 3 cut(s) | 250, 325, 849 |
| MaeIII | GTNAC | 5 cut(s) | 52, 87, 253, 277, 523 |
| MalI | GATC | 3 cut(s) | 135, 792, 881 |
| MboI | GATC | 3 cut(s) | 133, 790, 879 |
| MboII | GAAGA | 3 cut(s) | 218, 350, 839 |
| MfeI | CAATTG | 1 cut(s) | 391 |
| MflI | RGATCY | 1 cut(s) | 879 |
| MluCI | AATT | 4 cut(s) | 96, 391, 676, 807 |
| MnlI | CCTC | 9 cut(s) | 20, 224, 328, 331, 493, 542, 587, 757, 870 |
| Mph1103I | ATGCAT | 1 cut(s) | 184 |
| MroXI | GAANNNNTTC | 1 cut(s) | 414 |
| MslI | CAYNNNNRTG | 1 cut(s) | 410 |
| MspI | CCGG | 3 cut(s) | 139, 776, 794 |
| MspR9I | CCNGG | 4 cut(s) | 15, 174, 344, 447 |
| MunI | CAATTG | 1 cut(s) | 391 |
| Mva1269I | GAATGC | 1 cut(s) | 683 |
| MvaI | CCWGG | 4 cut(s) | 15, 174, 344, 447 |
| NcoI | CCATGG | 1 cut(s) | 383 |
| NdeI | CATATG | 1 cut(s) | 123 |
| NdeII | GATC | 3 cut(s) | 133, 790, 879 |
| NlaIV | GGNNCC | 3 cut(s) | 444, 718, 881 |
| NmeAIII | GCCGAG | 1 cut(s) | 793 |
| NmuCI | GTSAC | 3 cut(s) | 52, 87, 253 |
| NsiI | ATGCAT | 1 cut(s) | 184 |
| NspI | RCATGY | 2 cut(s) | 35, 457 |
| PaeI | GCATGC | 1 cut(s) | 35 |
| PagI | TCATGA | 1 cut(s) | 202 |
| PciI | ACATGT | 1 cut(s) | 453 |
| PctI | GAATGC | 1 cut(s) | 683 |
| PdmI | GAANNNNTTC | 1 cut(s) | 414 |
| PfeI | GAWTC | 1 cut(s) | 118 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 384 |
| PkrI | GCNGC | 2 cut(s) | 537, 615 |
| Ppu21I | YACGTR | 1 cut(s) | 251 |
| PscI | ACATGT | 1 cut(s) | 453 |
| Psp6I | CCWGG | 4 cut(s) | 13, 172, 342, 445 |
| PspGI | CCWGG | 4 cut(s) | 13, 172, 342, 445 |
| PspN4I | GGNNCC | 3 cut(s) | 444, 718, 881 |
| PspPI | GGNCC | 4 cut(s) | 340, 443, 551, 781 |
| PstNI | CAGNNNCTG | 2 cut(s) | 91, 349 |
| PsuI | RGATCY | 1 cut(s) | 879 |
| RsaI | GTAC | 7 cut(s) | 47, 249, 267, 296, 353, 822, 840 |
| RsaNI | GTAC | 7 cut(s) | 46, 248, 266, 295, 352, 821, 839 |
| RseI | CAYNNNNRTG | 1 cut(s) | 410 |
| SatI | GCNGC | 2 cut(s) | 536, 614 |
| Sau3AI | GATC | 3 cut(s) | 133, 790, 879 |
| Sau96I | GGNCC | 4 cut(s) | 340, 443, 551, 781 |
| ScrFI | CCNGG | 4 cut(s) | 15, 174, 344, 447 |
| SfaNI | GCATC | 1 cut(s) | 547 |
| SinI | GGWCC | 3 cut(s) | 443, 551, 781 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 410 |
| SphI | GCATGC | 1 cut(s) | 35 |
| Sse9I | AATT | 4 cut(s) | 96, 391, 676, 807 |
| SsiI | CCGC | 3 cut(s) | 261, 462, 779 |
| SspMI | CTAG | 1 cut(s) | 803 |
| StyD4I | CCNGG | 4 cut(s) | 13, 172, 342, 445 |
| StyI | CCWWGG | 2 cut(s) | 362, 383 |
| TaaI | ACNGT | 5 cut(s) | 73, 319, 691, 721, 864 |
| TaiI | ACGT | 3 cut(s) | 253, 328, 852 |
| TaqII | GACCGA | 1 cut(s) | 590 |
| TasI | AATT | 4 cut(s) | 96, 391, 676, 807 |
| TatI | WGTACW | 4 cut(s) | 265, 351, 820, 838 |
| TfiI | GAWTC | 1 cut(s) | 118 |
| TscAI | CASTG | 2 cut(s) | 96, 694 |
| TseFI | GTSAC | 3 cut(s) | 52, 87, 253 |
| TseI | GCWGC | 2 cut(s) | 535, 613 |
| Tsp45I | GTSAC | 3 cut(s) | 52, 87, 253 |
| TspDTI | ATGAA | 7 cut(s) | 110, 140, 191, 219, 228, 603, 684 |
| TspGWI | ACGGA | 1 cut(s) | 435 |
| TspRI | CASTG | 2 cut(s) | 96, 694 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 384 |
| VpaK11BI | GGWCC | 3 cut(s) | 443, 551, 781 |
| XapI | RAATTY | 2 cut(s) | 96, 676 |
| XceI | RCATGY | 2 cut(s) | 35, 457 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 890 |
| XmnI | GAANNNNTTC | 1 cut(s) | 414 |
| XspI | CTAG | 1 cut(s) | 803 |
| Zsp2I | ATGCAT | 1 cut(s) | 184 |