Rh6BG075900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000124
Physical Location & Seq
Reverse (-)
11635137 .. 11638017
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG075900.1

Sequence Viewer

Length: 567 bp
ATGCACATGAAGGATGACAACCAACCGATCGCTGATCTGTATTTGGACGGATTACCGGACGTTCCCTACTTCGTCGAGATTACACCACAAGGATCGGACAAGTGGTTTGATGGTCATTGGACCACTTTTCTTCACCGTGTCAGCAATGGTCAAGGACGGATGGTGTTGTGGTTCCATTATAGAGGGGATATGACCTTCATCGTACGCCGCTTCGATGTTAACGGCCGGTTGATGCTTGGAGCTCCCAAGCCGCCCTTTGGATTTGTGGTGGACCAGTCAATGGAACTGACTGGTATTTTGGACTCCTTCATGTCGGACATTTGGGATCGGAAAGTAACTGTGGCTTTCCATGCTGATTTTGCTCGTAGCCTATTTGGAGATGATGAGAGACGTGTGATAAAGGTGCAGAAATCAAATGGCCGGGTGTGGCGAATCAAGGTGGTCCCAAGCAACACAACTCATGTTTTGAGTGCAGGCTACACTCAAATGAAGGATGCTCTTCGACTGCCCCTATATTCTACAATCCGACTTCATGTGGTTAATCCAACACTACTTGTGTTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.73

Weight (kDa)

8.05

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 280
AciI CCGC 2 cut(s) 208, 251
AclWI GGATC 2 cut(s) 100, 333
AcoI YGGCCR 2 cut(s) 223, 418
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 2 cut(s) 257, 280
AflIII ACRYGT 1 cut(s) 391
AjiI CACGTC 1 cut(s) 392
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 2 cut(s) 100, 333
AoxI GGCC 2 cut(s) 223, 418
ArsI GACNNNNNNTTYG 4 cut(s) 89, 121, 280, 312
AspS9I GGNCC 3 cut(s) 120, 271, 442
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 3 cut(s) 120, 271, 442
BanII GRGCYC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 244
BccI CCATC 2 cut(s) 104, 154
BceAI ACGGC 1 cut(s) 238
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 1 cut(s) 382
BisI GCNGC 2 cut(s) 208, 251
BlsI GCNGC 2 cut(s) 209, 252
Bme1390I CCNGG 1 cut(s) 422
Bme18I GGWCC 3 cut(s) 120, 271, 442
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 3 cut(s) 120, 271, 442
BmiI GGNNCC 2 cut(s) 173, 444
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 2 cut(s) 222, 484
BpuMI CCSGG 1 cut(s) 422
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 280
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 274, 295
Bse3DI GCAATG 1 cut(s) 151
BseGI GGATG 3 cut(s) 19, 165, 499
BseLI CCNNNNNNNGG 2 cut(s) 257, 280
BseMI GCAATG 1 cut(s) 151
BseNI ACTGG 2 cut(s) 274, 295
BseX3I CGGCCG 1 cut(s) 223
BsgI GTGCAG 2 cut(s) 425, 492
Bsh1285I CGRYCG 2 cut(s) 30, 226
BshFI GGCC 2 cut(s) 225, 420
BsiEI CGRYCG 2 cut(s) 30, 226
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 3 cut(s) 56, 226, 421
BsiWI CGTACG 1 cut(s) 202
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 2 cut(s) 257, 280
BsmAI GTCTC 1 cut(s) 382
BsmBI CGTCTC 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 2 cut(s) 225, 420
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 4 cut(s) 27, 34, 92, 325
BspACI CCGC 2 cut(s) 208, 251
BspANI GGCC 2 cut(s) 225, 420
BspLI GGNNCC 2 cut(s) 173, 444
BspPI GGATC 2 cut(s) 100, 333
BspQI GCTCTTC 1 cut(s) 504
BsrDI GCAATG 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 2 cut(s) 274, 295
BssAI RCCGGY 1 cut(s) 225
BssMI GATC 4 cut(s) 27, 34, 92, 325
Bst4CI ACNGT 2 cut(s) 137, 340
Bst6I CTCTTC 1 cut(s) 504
BstC8I GCNNGC 1 cut(s) 475
BstF5I GGATG 3 cut(s) 19, 165, 499
BstKTI GATC 4 cut(s) 30, 37, 95, 328
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 4 cut(s) 27, 34, 92, 325
BstMCI CGRYCG 2 cut(s) 30, 226
BstMWI GCNNNNNNNGC 2 cut(s) 350, 359
BstSCI CCNGG 1 cut(s) 420
BstZI CGGCCG 1 cut(s) 223
BsuRI GGCC 2 cut(s) 225, 420
BtrI CACGTC 1 cut(s) 392
BtsCI GGATG 3 cut(s) 19, 165, 499
Cac8I GCNNGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 3 cut(s) 120, 271, 442
Csp6I GTAC 1 cut(s) 203
CviAII CATG 5 cut(s) 7, 310, 350, 461, 533
CviJI RGCY 7 cut(s) 225, 242, 250, 344, 369, 420, 477
CviKI_1 RGCY 7 cut(s) 225, 242, 250, 344, 369, 420, 477
CviQI GTAC 1 cut(s) 203
DpnI GATC 4 cut(s) 29, 36, 94, 327
DpnII GATC 4 cut(s) 27, 34, 92, 325
EaeI YGGCCR 2 cut(s) 223, 418
EagI CGGCCG 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Ecl136II GAGCTC 1 cut(s) 242
EclXI CGGCCG 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 244
Eco47I GGWCC 3 cut(s) 120, 271, 442
Eco52I CGGCCG 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 244
Esp3I CGTCTC 1 cut(s) 382
FaeI CATG 5 cut(s) 10, 313, 353, 464, 536
FaiI YATR 8 cut(s) 8, 180, 191, 311, 351, 462, 514, 534
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FaqI GGGAC 1 cut(s) 428
FatI CATG 5 cut(s) 6, 309, 349, 460, 532
Fnu4HI GCNGC 2 cut(s) 208, 251
FokI GGATG 3 cut(s) 26, 172, 506
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 2 cut(s) 208, 251
GluI GCNGC 2 cut(s) 208, 251
HaeIII GGCC 2 cut(s) 225, 420
HapII CCGG 3 cut(s) 56, 226, 421
Hin1II CATG 5 cut(s) 10, 313, 353, 464, 536
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 2 cut(s) 302, 432
HpaI GTTAAC 1 cut(s) 220
HpaII CCGG 3 cut(s) 56, 226, 421
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 2 cut(s) 220, 271
Hpy188I TCNGA 4 cut(s) 97, 316, 330, 527
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 2 cut(s) 220, 271
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 4 cut(s) 4, 205, 316, 484
HpyCH4III ACNGT 2 cut(s) 137, 340
HpyCH4IV ACGT 2 cut(s) 60, 391
HpyCH4V TGCA 3 cut(s) 4, 406, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 359
HpySE526I ACGT 2 cut(s) 60, 391
Hsp92II CATG 5 cut(s) 10, 313, 353, 464, 536
KspAI GTTAAC 1 cut(s) 220
Kzo9I GATC 4 cut(s) 27, 34, 92, 325
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 2 cut(s) 239, 247
LpnPI CCDG 6 cut(s) 69, 239, 276, 287, 434, 459
LweI GCATC 2 cut(s) 222, 484
MaeII ACGT 2 cut(s) 60, 391
MaeIII GTNAC 1 cut(s) 334
MalI GATC 4 cut(s) 29, 36, 94, 327
MboI GATC 4 cut(s) 27, 34, 92, 325
MboII GAAGA 2 cut(s) 122, 491
MhlI GDGCHC 1 cut(s) 244
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 294, 550
MnlI CCTC 1 cut(s) 176
MseI TTAA 2 cut(s) 219, 540
MslI CAYNNNNRTG 1 cut(s) 485
MspI CCGG 3 cut(s) 56, 226, 421
MspR9I CCNGG 1 cut(s) 422
MwoI GCNNNNNNNGC 2 cut(s) 350, 359
NciI CCSGG 1 cut(s) 422
NdeII GATC 4 cut(s) 27, 34, 92, 325
NlaIII CATG 5 cut(s) 10, 313, 353, 464, 536
NlaIV GGNNCC 2 cut(s) 173, 444
PciSI GCTCTTC 1 cut(s) 504
PfeI GAWTC 1 cut(s) 432
Pfl23II CGTACG 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 2 cut(s) 209, 252
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 244
PspLI CGTACG 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 173, 444
PspPI GGNCC 3 cut(s) 120, 271, 442
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 485
SacI GAGCTC 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 2 cut(s) 219, 540
SatI GCNGC 2 cut(s) 208, 251
Sau3AI GATC 4 cut(s) 27, 34, 92, 325
Sau96I GGNCC 3 cut(s) 120, 271, 442
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 422
SduI GDGCHC 1 cut(s) 244
SetI ASST 6 cut(s) 63, 197, 244, 394, 405, 441
SfaNI GCATC 2 cut(s) 222, 484
SinI GGWCC 3 cut(s) 120, 271, 442
SmiMI CAYNNNNRTG 1 cut(s) 485
SsiI CCGC 2 cut(s) 208, 251
SstI GAGCTC 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 420
TaaI ACNGT 2 cut(s) 137, 340
TaiI ACGT 2 cut(s) 63, 394
TaqI TCGA 4 cut(s) 75, 213, 502, 561
TauI GCSGC 2 cut(s) 210, 253
TfiI GAWTC 1 cut(s) 432
Tru1I TTAA 2 cut(s) 219, 540
Tru9I TTAA 2 cut(s) 219, 540
TspDTI ATGAA 5 cut(s) 23, 187, 298, 503, 521
TspGWI ACGGA 2 cut(s) 63, 172
Van91I CCANNNNNTGG 1 cut(s) 280
VpaK11BI GGWCC 3 cut(s) 120, 271, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.