Rmu_sc0003179.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003179.1
OG0000124
Physical Location & Seq
Reverse (-)
78689 .. 84380
5692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003179.1_g000019.1.cds

Sequence Viewer

Length: 2331 bp
atggtccgcattcccaagaaggtcaatagggaaaatttgaaaatttacatagatgccaacatgacgcgatacggtggcatggtgagggtgacactgcagggttcaagcggagaaggttgtgcgcggtgggtgtcggctaggcgtaagcttgacgtggggagagggaggattgagactgggttacaactccctggcaacctttccactgctgcggggaaggatgaacagaaaatgacattatctaagattggcgagttcaaggacaccgtgaacaacctatcagatgcaaaagttaaggccgttgtgggggtgggatatggatttatgcaatgcattaggtcagatgaagtcgtccccgaaattttgcgagacatggtcaaaaatatcgacacagaagcatgcaatatcaggctgaagggtaggcttctgtttgtagacgcggacgaatttacgcgtgttatgggcattcacaacagggggcatgccattgaactcgggggtgacattagtcctgctgaatatggaaatgttgtagctccgatgcttggcccagctggcaatatagcagtggataatctgaagttcattgtgcgagacagggaaattgttgacgactgtttcattataccttatgtattgttggctctgaccctagtaatatgtccgggaacaagtaatgatgtacaaagtgggttgttgttgccattgctagatacccgcagtataggagcgaagaattgggcaacatttgcagtggaatacttgatggagggaataagaaagcatcgtcaagaaggatccccggttgtagcgggatgtgcactatatctgcagctggtatattgtgacaaagttggtgagaagttactgccaaaggagcggctagtggcacctgtgatggattggagccttggggagataaatgtgttgctgggtaggttagtagcagaaactaaaaccaagataatgggtgagacgggagacaattgtaataaggggactagtgtggatgaggcagtgaacgacgaggagtctgtgggattttcattaagaaaatcactacacgaagacatgtttgatcttatggtcgacgtgggaaggttaaaagatgatatggtggttgtgaaagaaattgtaaccggaataccgcagaaattttcggagctaacagaaggtgtgctggtgcttttggaatctttattgaaggtgaaggaaacttgtgttgcggaggttagagaggagtggcgattcatgcggatgaacatgcatgatacggagcaacgacatgaaggggaggactattatagcccacatcgccatgcagtagagcaaggaattgaacaggcggttcggtcggacactggaagcagcccaaccggagcacaatgtcggaaaataaaaagcttcagggaagaaggcaccattaaagacagaggtgtgaagcgaagtcatggacgtgttgtgggtgaaaacagaagtgataagtatgactacatcaagtatgtaatgggctatatgggaaaggaagaggaaacttccaattcgatgggacgaatggttgccgggccgtacagactgaaggtcacatcaccagatttcgacgtcgcactgatagaatttgtttttttttggggaaaggtcctgacatcagaagaaatcagaacatggatcggggtgtgcggagatggggcagaagttatttatagaggggacttggtcaccctaaacccttgtgtatgggtatcgggaagtgtgataaattatgtaggggagtggcttaaccagcgggatggattcaggaattggtattggccggtggagtttgcgtatagagctacacataatgaggataacacatggatcgactgggtgaaccacacaagggaaatatgcaagttagagaggttcgacgggaagattgcagagtgcgagaagctacaagatattgaccgtgtgatggcggttgagaacttaaagcaaaatggaggagggaaaacagtctcatattttgtggcagttgaaccgcatcgtgtacccaaacaaaggaattcatatgactgtggggtgtacgttatgaagaacatgcaaaactatggagacgattgggcattaggggcaccaaataaccagatgtcaagaacaatagaagatgtcatcaaaggaagttgctatggggtggaggatcgactgactcaagtaaggggggagcagacccctggtatagctcatccatttgaagaatggggttctgatcagtttcacctgtttgataaagccgaagattggattggaggtggcgaagaagggggaacagaaaccagaaactgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

776

Amino Acids

87.18

Weight (kDa)

5.43

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1605
AccB1I GGYRCC 3 cut(s) 889, 1418, 2116
AccBSI CCGCTC 1 cut(s) 880
AccI GTMKAC 2 cut(s) 435, 1089
AccII CGCG 4 cut(s) 67, 124, 440, 454
AclWI GGATC 5 cut(s) 792, 805, 1676, 1868, 2190
AcoI YGGCCR 1 cut(s) 1811
AcsI RAATTY 7 cut(s) 34, 42, 360, 446, 1154, 1616, 2047
AcuI CTGAAG 4 cut(s) 434, 599, 1390, 1598
AcyI GRCGYC 1 cut(s) 1602
AfaI GTAC 4 cut(s) 684, 1571, 2034, 2069
AfiI CCNNNNNNNGG 6 cut(s) 306, 545, 1882, 1957, 2043, 2283
AflIII ACRYGT 3 cut(s) 452, 1071, 1456
AgsI TTSAA 8 cut(s) 40, 105, 259, 491, 1204, 1340, 2021, 2237
AhdI GACNNNNNGTC 2 cut(s) 1030, 1580
AhlI ACTAGT 1 cut(s) 1001
AjiI CACGTC 3 cut(s) 154, 1093, 1457
AjnI CCWGG 2 cut(s) 190, 2215
AjuI GAANNNNNNNTTGG 2 cut(s) 2271, 2303
AluBI AGCT 9 cut(s) 148, 536, 554, 835, 1165, 1404, 1835, 1936, 2225
AluI AGCT 9 cut(s) 148, 536, 554, 835, 1165, 1404, 1835, 1936, 2225
Alw21I GWGCWC 2 cut(s) 823, 1384
Alw26I GTCTC 7 cut(s) 167, 363, 588, 968, 975, 2005, 2091
Alw44I GTGCAC 1 cut(s) 819
AlwI GGATC 5 cut(s) 792, 805, 1676, 1868, 2190
AlwNI CAGNNNCTG 1 cut(s) 2325
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 4 cut(s) 297, 547, 1565, 1811
ApaLI GTGCAC 1 cut(s) 819
ApeKI GCWGC 3 cut(s) 209, 832, 1368
ApoI RAATTY 7 cut(s) 34, 42, 360, 446, 1154, 1616, 2047
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 4 cut(s) 4, 548, 1565, 1639
AsuC2I CCSGG 3 cut(s) 666, 803, 1564
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 2 cut(s) 4, 1639
BaeGI GKGCMC 2 cut(s) 823, 2119
BamHI GGATCC 1 cut(s) 797
BanI GGYRCC 3 cut(s) 889, 1418, 2116
BbsI GAAGAC 1 cut(s) 1074
Bbv12I GWGCWC 2 cut(s) 823, 1384
BbvI GCAGC 3 cut(s) 196, 844, 1380
BccI CCATC 6 cut(s) 760, 892, 1540, 1679, 1784, 1951
BceAI ACGGC 2 cut(s) 284, 1552
BciT130I CCWGG 2 cut(s) 192, 2217
BclI TGATCA 1 cut(s) 2251
BcnI CCSGG 3 cut(s) 666, 803, 1564
BcoDI GTCTC 7 cut(s) 167, 363, 588, 968, 975, 2005, 2091
BcuI ACTAGT 1 cut(s) 1001
BfaI CTAG 5 cut(s) 138, 653, 710, 884, 1002
BfmI CTRYAG 2 cut(s) 95, 830
BglI GCCNNNNNGGC 1 cut(s) 555
BisI GCNGC 4 cut(s) 210, 833, 881, 1369
BlsI GCNGC 4 cut(s) 211, 834, 882, 1370
Bme1390I CCNGG 5 cut(s) 192, 666, 803, 1564, 2217
Bme18I GGWCC 2 cut(s) 4, 1639
BmeRI GACNNNNNGTC 2 cut(s) 1030, 1580
BmeT110I CYCGRG 1 cut(s) 494
BmgBI CACGTC 3 cut(s) 154, 1093, 1457
BmgT120I GGNCC 4 cut(s) 4, 548, 1565, 1639
BmiI GGNNCC 5 cut(s) 799, 891, 908, 1420, 2118
BmrFI CCNGG 5 cut(s) 192, 666, 803, 1564, 2217
BmrI ACTGGG 2 cut(s) 186, 1876
BmsI GCATC 5 cut(s) 43, 274, 531, 793, 2035
BmuI ACTGGG 2 cut(s) 186, 1876
BoxI GACNNNNGTC 1 cut(s) 507
BpiI GAAGAC 1 cut(s) 1074
BpuEI CTTGAG 1 cut(s) 2178
BpuMI CCSGG 3 cut(s) 666, 803, 1564
BsaHI GRCGYC 1 cut(s) 1602
BsaJI CCNNGG 4 cut(s) 190, 801, 910, 2215
BsaWI WCCGGW 2 cut(s) 1139, 1376
BsaXI ACNNNNNCTCC 2 cut(s) 1811, 1841
Bsc4I CCNNNNNNNGG 6 cut(s) 306, 545, 1882, 1957, 2043, 2283
Bse118I RCCGGY 1 cut(s) 1813
Bse1I ACTGG 3 cut(s) 181, 1366, 1871
Bse3DI GCAATG 2 cut(s) 335, 704
BseBI CCWGG 2 cut(s) 192, 2217
BseDI CCNNGG 4 cut(s) 190, 801, 910, 2215
BseGI GGATG 6 cut(s) 226, 821, 1015, 1263, 1795, 2227
BseLI CCNNNNNNNGG 6 cut(s) 306, 545, 1882, 1957, 2043, 2283
BseMI GCAATG 2 cut(s) 335, 704
BseNI ACTGG 3 cut(s) 181, 1366, 1871
BseRI GAGGAG 3 cut(s) 1043, 1253, 2001
BseSI GKGCMC 2 cut(s) 823, 2119
BseXI GCAGC 3 cut(s) 196, 844, 1380
BseYI CCCAGC 2 cut(s) 550, 931
Bsh1236I CGCG 4 cut(s) 67, 124, 440, 454
Bsh1285I CGRYCG 1 cut(s) 1355
BshFI GGCC 4 cut(s) 299, 549, 1567, 1813
BshNI GGYRCC 3 cut(s) 889, 1418, 2116
BsiEI CGRYCG 1 cut(s) 1355
BsiHKAI GWGCWC 2 cut(s) 823, 1384
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 6 cut(s) 665, 803, 1140, 1377, 1563, 1814
BslFI GGGAC 4 cut(s) 338, 1012, 1563, 1724
BslI CCNNNNNNNGG 6 cut(s) 306, 545, 1882, 1957, 2043, 2283
BsmAI GTCTC 7 cut(s) 167, 363, 588, 968, 975, 2005, 2091
BsmBI CGTCTC 2 cut(s) 968, 2091
BsmFI GGGAC 4 cut(s) 338, 1012, 1563, 1724
BsmI GAATGC 2 cut(s) 9, 465
BsnI GGCC 4 cut(s) 299, 549, 1567, 1813
BsoBI CYCGRG 1 cut(s) 494
Bsp1286I GDGCHC 3 cut(s) 823, 1384, 2119
Bsp1407I TGTACA 1 cut(s) 682
Bsp143I GATC 6 cut(s) 797, 1078, 1668, 1860, 2182, 2251
BspANI GGCC 4 cut(s) 299, 549, 1567, 1813
BspFNI CGCG 4 cut(s) 67, 124, 440, 454
BspLI GGNNCC 5 cut(s) 799, 891, 908, 1420, 2118
BspMAI CTGCAG 2 cut(s) 99, 834
BspPI GGATC 5 cut(s) 792, 805, 1676, 1868, 2190
BspT107I GGYRCC 3 cut(s) 889, 1418, 2116
BsrBI CCGCTC 1 cut(s) 880
BsrDI GCAATG 2 cut(s) 335, 704
BsrFI RCCGGY 1 cut(s) 1813
BsrGI TGTACA 1 cut(s) 682
BsrI ACTGG 3 cut(s) 181, 1366, 1871
BssAI RCCGGY 1 cut(s) 1813
BssECI CCNNGG 4 cut(s) 190, 801, 910, 2215
BssMI GATC 6 cut(s) 797, 1078, 1668, 1860, 2182, 2251
BssNI GRCGYC 1 cut(s) 1602
BssT1I CCWWGG 1 cut(s) 910
Bst2UI CCWGG 2 cut(s) 192, 2217
Bst4CI ACNGT 7 cut(s) 74, 268, 617, 1952, 1999, 2060, 2327
Bst6I CTCTTC 1 cut(s) 1521
BstACI GRCGYC 1 cut(s) 1602
BstAPI GCANNNNNTGC 1 cut(s) 749
BstAUI TGTACA 1 cut(s) 682
BstC8I GCNNGC 3 cut(s) 400, 483, 556
BstDEI CTNAG 1 cut(s) 243
BstEII GGTNACC 1 cut(s) 1717
BstF5I GGATG 6 cut(s) 226, 821, 1015, 1263, 1795, 2227
BstFNI CGCG 4 cut(s) 67, 124, 440, 454
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 6 cut(s) 800, 1081, 1671, 1863, 2185, 2254
BstMAI GTCTC 7 cut(s) 167, 363, 588, 968, 975, 2005, 2091
BstMBI GATC 6 cut(s) 797, 1078, 1668, 1860, 2182, 2251
BstMCI CGRYCG 1 cut(s) 1355
BstMWI GCNNNNNNNGC 9 cut(s) 555, 749, 818, 877, 1252, 1314, 1783, 1832, 2114
BstNI CCWGG 2 cut(s) 192, 2217
BstNSI RCATGY 5 cut(s) 402, 485, 1075, 1267, 2086
BstPAI GACNNNNGTC 1 cut(s) 507
BstPI GGTNACC 1 cut(s) 1717
BstSCI CCNGG 5 cut(s) 190, 664, 801, 1562, 2215
BstSFI CTRYAG 2 cut(s) 95, 830
BstSLI GKGCMC 2 cut(s) 823, 2119
BstUI CGCG 4 cut(s) 67, 124, 440, 454
BstV1I GCAGC 3 cut(s) 196, 844, 1380
BstV2I GAAGAC 1 cut(s) 1074
BstX2I RGATCY 1 cut(s) 797
BstXI CCANNNNNNTGG 3 cut(s) 967, 1546, 1790
BstYI RGATCY 1 cut(s) 797
BsuRI GGCC 4 cut(s) 299, 549, 1567, 1813
BtgZI GCGATG 1 cut(s) 1298
BtrI CACGTC 3 cut(s) 154, 1093, 1457
BtsCI GGATG 6 cut(s) 226, 821, 1015, 1263, 1795, 2227
BtsI GCAGTG 5 cut(s) 92, 204, 573, 759, 1023
BtsIMutI CAGTG 7 cut(s) 92, 204, 573, 759, 1023, 1359, 1607
Cac8I GCNNGC 3 cut(s) 400, 483, 556
CaiI CAGNNNCTG 1 cut(s) 2325
CfoI GCGC 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 1813
Cfr13I GGNCC 4 cut(s) 4, 548, 1565, 1639
CseI GACGC 2 cut(s) 73, 446
Csp6I GTAC 4 cut(s) 683, 1570, 2033, 2068
CviQI GTAC 4 cut(s) 683, 1570, 2033, 2068
DdeI CTNAG 1 cut(s) 243
DpnI GATC 6 cut(s) 799, 1080, 1670, 1862, 2184, 2253
DpnII GATC 6 cut(s) 797, 1078, 1668, 1860, 2182, 2251
DriI GACNNNNNGTC 2 cut(s) 1030, 1580
EaeI YGGCCR 1 cut(s) 1811
Eam1104I CTCTTC 1 cut(s) 1521
Eam1105I GACNNNNNGTC 2 cut(s) 1030, 1580
EarI CTCTTC 1 cut(s) 1521
Eco130I CCWWGG 1 cut(s) 910
Eco47I GGWCC 2 cut(s) 4, 1639
Eco57I CTGAAG 4 cut(s) 434, 599, 1390, 1598
Eco88I CYCGRG 1 cut(s) 494
Eco91I GGTNACC 1 cut(s) 1717
EcoO109I RGGNCCY 1 cut(s) 1639
EcoO65I GGTNACC 1 cut(s) 1717
EcoRI GAATTC 1 cut(s) 2047
EcoRII CCWGG 2 cut(s) 190, 2215
EcoT14I CCWWGG 1 cut(s) 910
EcoT22I ATGCAT 2 cut(s) 335, 1269
ErhI CCWWGG 1 cut(s) 910
Esp3I CGTCTC 2 cut(s) 968, 2091
FaqI GGGAC 4 cut(s) 338, 1012, 1563, 1724
FauI CCCGC 4 cut(s) 205, 725, 805, 1779
FauNDI CATATG 1 cut(s) 2053
FbaI TGATCA 1 cut(s) 2251
FblI GTMKAC 2 cut(s) 435, 1089
Fnu4HI GCNGC 4 cut(s) 210, 833, 881, 1369
FokI GGATG 6 cut(s) 233, 828, 1022, 1270, 1802, 2214
Fsp4HI GCNGC 4 cut(s) 210, 833, 881, 1369
FspBI CTAG 5 cut(s) 138, 653, 710, 884, 1002
GlaI GCGC 1 cut(s) 123
GluI GCNGC 4 cut(s) 210, 833, 881, 1369
GsaI CCCAGC 2 cut(s) 554, 935
HaeIII GGCC 4 cut(s) 299, 549, 1567, 1813
HapII CCGG 6 cut(s) 665, 803, 1140, 1377, 1563, 1814
HgaI GACGC 2 cut(s) 73, 446
HhaI GCGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 1602
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HincII GTYRAC 2 cut(s) 610, 1090
HindII GTYRAC 2 cut(s) 610, 1090
HindIII AAGCTT 2 cut(s) 146, 1402
HinfI GANTC 5 cut(s) 1031, 1193, 1248, 1794, 2191
HpaII CCGG 6 cut(s) 665, 803, 1140, 1377, 1563, 1814
Hpy166II GTNNAC 9 cut(s) 271, 436, 610, 821, 1021, 1090, 1873, 2033, 2068
Hpy188III TCNNGA 5 cut(s) 791, 1642, 1746, 1798, 2136
Hpy8I GTNNAC 9 cut(s) 271, 436, 610, 821, 1021, 1090, 1873, 2033, 2068
Hpy99I CGWCG 5 cut(s) 1028, 1094, 1604, 1607, 1913
HpyCH4III ACNGT 7 cut(s) 74, 268, 617, 1952, 1999, 2060, 2327
HpyCH4IV ACGT 5 cut(s) 153, 1092, 1456, 1602, 2070
HpyF10VI GCNNNNNNNGC 9 cut(s) 555, 749, 818, 877, 1252, 1314, 1783, 1832, 2114
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 5 cut(s) 153, 1092, 1456, 1602, 2070
Hsp92I GRCGYC 1 cut(s) 1602
HspAI GCGC 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 2251
Kzo9I GATC 6 cut(s) 797, 1078, 1668, 1860, 2182, 2251
LmnI GCTCC 8 cut(s) 541, 728, 877, 906, 1162, 1276, 1379, 2206
Lsp1109I GCAGC 3 cut(s) 196, 844, 1380
LweI GCATC 5 cut(s) 43, 274, 531, 793, 2035
MaeI CTAG 5 cut(s) 138, 653, 710, 884, 1002
MaeII ACGT 5 cut(s) 153, 1092, 1456, 1602, 2070
MaeIII GTNAC 8 cut(s) 88, 180, 500, 845, 864, 1135, 1582, 1717
MalI GATC 6 cut(s) 799, 1080, 1670, 1862, 2184, 2253
MbiI CCGCTC 1 cut(s) 880
MboI GATC 6 cut(s) 797, 1078, 1668, 1860, 2182, 2251
MfeI CAATTG 1 cut(s) 985
MflI RGATCY 1 cut(s) 797
MhlI GDGCHC 3 cut(s) 823, 1384, 2119
MluI ACGCGT 1 cut(s) 452
MlyI GAGTC 2 cut(s) 1040, 2185
MmeI TCCRAC 2 cut(s) 1335, 1370
Mph1103I ATGCAT 2 cut(s) 335, 1269
MseI TTAA 6 cut(s) 294, 1049, 1103, 1425, 1779, 1973
MslI CAYNNNNRTG 3 cut(s) 1256, 1317, 1455
MspA1I CMGCKG 3 cut(s) 554, 835, 1786
MspI CCGG 6 cut(s) 665, 803, 1140, 1377, 1563, 1814
MspR9I CCNGG 5 cut(s) 192, 666, 803, 1564, 2217
MunI CAATTG 1 cut(s) 985
Mva1269I GAATGC 2 cut(s) 9, 465
MvaI CCWGG 2 cut(s) 192, 2217
MvnI CGCG 4 cut(s) 67, 124, 440, 454
MwoI GCNNNNNNNGC 9 cut(s) 555, 749, 818, 877, 1252, 1314, 1783, 1832, 2114
NciI CCSGG 3 cut(s) 666, 803, 1564
NdeI CATATG 1 cut(s) 2053
NdeII GATC 6 cut(s) 797, 1078, 1668, 1860, 2182, 2251
NlaIV GGNNCC 5 cut(s) 799, 891, 908, 1420, 2118
NmuCI GTSAC 5 cut(s) 88, 500, 845, 1582, 1717
NsiI ATGCAT 2 cut(s) 335, 1269
NspI RCATGY 5 cut(s) 402, 485, 1075, 1267, 2086
PaeI GCATGC 2 cut(s) 402, 485
PciI ACATGT 1 cut(s) 1071
PctI GAATGC 2 cut(s) 9, 465
PfeI GAWTC 3 cut(s) 1193, 1248, 1794
PflFI GACNNNGTC 2 cut(s) 374, 1715
PfoI TCCNGGA 1 cut(s) 664
PkrI GCNGC 4 cut(s) 211, 834, 882, 1370
PleI GAGTC 2 cut(s) 1039, 2185
PpsI GAGTC 2 cut(s) 1039, 2185
PpuMI RGGWCCY 1 cut(s) 1639
PscI ACATGT 1 cut(s) 1071
PshAI GACNNNNGTC 1 cut(s) 507
Psp5II RGGWCCY 1 cut(s) 1639
Psp6I CCWGG 2 cut(s) 190, 2215
PspEI GGTNACC 1 cut(s) 1717
PspFI CCCAGC 2 cut(s) 550, 931
PspGI CCWGG 2 cut(s) 190, 2215
PspN4I GGNNCC 5 cut(s) 799, 891, 908, 1420, 2118
PspPI GGNCC 4 cut(s) 4, 548, 1565, 1639
PspPPI RGGWCCY 1 cut(s) 1639
PstI CTGCAG 2 cut(s) 99, 834
PstNI CAGNNNCTG 1 cut(s) 2325
PsuI RGATCY 1 cut(s) 797
PsyI GACNNNGTC 2 cut(s) 374, 1715
PvuII CAGCTG 2 cut(s) 554, 835
RsaI GTAC 4 cut(s) 684, 1571, 2034, 2069
RsaNI GTAC 4 cut(s) 683, 1570, 2033, 2068
RseI CAYNNNNRTG 3 cut(s) 1256, 1317, 1455
SalI GTCGAC 1 cut(s) 1088
SaqAI TTAA 6 cut(s) 294, 1049, 1103, 1425, 1779, 1973
SatI GCNGC 4 cut(s) 210, 833, 881, 1369
Sau3AI GATC 6 cut(s) 797, 1078, 1668, 1860, 2182, 2251
Sau96I GGNCC 4 cut(s) 4, 548, 1565, 1639
SchI GAGTC 2 cut(s) 1040, 2185
ScrFI CCNGG 5 cut(s) 192, 666, 803, 1564, 2217
SduI GDGCHC 3 cut(s) 823, 1384, 2119
SfaNI GCATC 5 cut(s) 43, 274, 531, 793, 2035
SfcI CTRYAG 2 cut(s) 95, 830
SinI GGWCC 2 cut(s) 4, 1639
SmiMI CAYNNNNRTG 3 cut(s) 1256, 1317, 1455
SmlI CTYRAG 1 cut(s) 2193
SmoI CTYRAG 1 cut(s) 2193
SpeI ACTAGT 1 cut(s) 1001
SphI GCATGC 2 cut(s) 402, 485
SspMI CTAG 5 cut(s) 138, 653, 710, 884, 1002
StyD4I CCNGG 5 cut(s) 190, 664, 801, 1562, 2215
StyI CCWWGG 1 cut(s) 910
TaaI ACNGT 7 cut(s) 74, 268, 617, 1952, 1999, 2060, 2327
TaiI ACGT 5 cut(s) 156, 1095, 1459, 1605, 2073
TaqI TCGA 7 cut(s) 387, 1089, 1544, 1599, 1863, 1908, 2185
TaqII GACCGA 1 cut(s) 1341
TatI WGTACW 1 cut(s) 682
TauI GCSGC 1 cut(s) 883
TfiI GAWTC 3 cut(s) 1193, 1248, 1794
Tru1I TTAA 6 cut(s) 294, 1049, 1103, 1425, 1779, 1973
Tru9I TTAA 6 cut(s) 294, 1049, 1103, 1425, 1779, 1973
TscAI CASTG 7 cut(s) 99, 211, 573, 759, 1023, 1366, 1614
TseFI GTSAC 5 cut(s) 88, 500, 845, 1582, 1717
TseI GCWGC 3 cut(s) 209, 832, 1368
Tsp45I GTSAC 5 cut(s) 88, 500, 845, 1582, 1717
TspGWI ACGGA 1 cut(s) 1289
TspRI CASTG 7 cut(s) 99, 211, 573, 759, 1023, 1366, 1614
Tth111I GACNNNGTC 2 cut(s) 374, 1715
VneI GTGCAC 1 cut(s) 819
VpaK11BI GGWCC 2 cut(s) 4, 1639
XapI RAATTY 7 cut(s) 34, 42, 360, 446, 1154, 1616, 2047
XceI RCATGY 5 cut(s) 402, 485, 1075, 1267, 2086
XcmI CCANNNNNNNNNTGG 1 cut(s) 2238
XmiI GTMKAC 2 cut(s) 435, 1089
XspI CTAG 5 cut(s) 138, 653, 710, 884, 1002
ZraI GACGTC 1 cut(s) 1603
Zsp2I ATGCAT 2 cut(s) 335, 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.