Rh6CG151300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000124
Physical Location & Seq
Reverse (-)
19760958 .. 19761746
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG151300.1

Sequence Viewer

Length: 789 bp
ATGGGTAGAGGGAAGCTTGGCAGTAGGTTACAACCCGGTGTCAACTCTTCATACGATGCCGGGAAGAAAGAACATAAACTGACATTATCAAAAATTGGCAACTTCAAGGACACGGTTAAGCACCTATCAGATGCAAAAGTTAAGGTCATCAGGGAGGTGGGGTTTGGTTTTATGCAATGCATAAAACCGAACGATGTGGTTCCACAAATATTTGAGGATATGGTTAACAATATCAACACGGAAGAATGCACGATCAGTTTGAAGGGGACGGTGGTGTCATTAGACGCAGACGAATTTACTCGTGTAATGGGCATTCACAACGGGGGGTGTCCCATTGAGCTTCGGGGAGACATTAGTGCAGCTGAATATGGCAATGTGGTAGGTCCGATGCTTGGGGATGGTGGCAATATTGCACTGGAAAATTTGCGGTTCTTTGTGCGTGACAGGGAAATTGTGGACGACACTTTCATTATAGCTTACGTATTTGTGGCACTGACCACTGTGATTTGTCCTGGAACAAGTAATGTGGTCCAAAGTGGGATGTTGTTGCCTTTACTAGAGACCACAGGTATAGTAGGCAAGAATTGGGCTAATTTTGCCGTTGACTACTTGATGGAGGGAATACGAAATCACAGACAACAAAGAAGCCCGATTGTTGAGGGATGTGCACTATATCTGCAGCTGGTATATTACGACAAAGTTGGTCAGAAGTTACTGCCAAAAGAGCGCCTGGTTGCACCGGTGATGGATTGGAGTCTTGGAGAGATAAATGAGTTGTGGGAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

262

Amino Acids

28.92

Weight (kDa)

5.48

Isoelectric Point (pI)

28.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 274
AciI CCGC 1 cut(s) 427
AcsI RAATTY 2 cut(s) 293, 421
AfiI CCNNNNNNNGG 1 cut(s) 392
AgeI ACCGGT 1 cut(s) 739
AgsI TTSAA 2 cut(s) 106, 262
AjnI CCWGG 2 cut(s) 511, 729
AluBI AGCT 5 cut(s) 16, 340, 362, 476, 682
AluI AGCT 5 cut(s) 16, 340, 362, 476, 682
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 2 cut(s) 342, 554
Alw44I GTGCAC 1 cut(s) 666
ApaLI GTGCAC 1 cut(s) 666
ApeKI GCWGC 2 cut(s) 359, 679
ApoI RAATTY 2 cut(s) 293, 421
AsiGI ACCGGT 1 cut(s) 739
AspLEI GCGC 1 cut(s) 729
AspS9I GGNCC 2 cut(s) 383, 529
AsuC2I CCSGG 2 cut(s) 36, 61
AsuHPI GGTGA 1 cut(s) 754
AvaII GGWCC 2 cut(s) 383, 529
BaeGI GKGCMC 1 cut(s) 670
BauI CACGAG 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 670
BbvI GCAGC 2 cut(s) 371, 691
BccI CCATC 3 cut(s) 392, 607, 739
BceAI ACGGC 1 cut(s) 584
BciT130I CCWGG 2 cut(s) 513, 731
BcnI CCSGG 2 cut(s) 36, 61
BcoDI GTCTC 2 cut(s) 342, 554
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 1 cut(s) 677
BfoI RGCGCY 1 cut(s) 730
BisI GCNGC 2 cut(s) 360, 680
BlsI GCNGC 2 cut(s) 361, 681
Bme1390I CCNGG 4 cut(s) 36, 61, 513, 731
Bme18I GGWCC 2 cut(s) 383, 529
BmgT120I GGNCC 2 cut(s) 383, 529
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 4 cut(s) 36, 61, 513, 731
BmsI GCATC 3 cut(s) 46, 121, 378
BpuMI CCSGG 2 cut(s) 36, 61
BsaAI YACGTR 1 cut(s) 481
BsaI GGTCTC 1 cut(s) 554
BsaWI WCCGGW 1 cut(s) 739
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse118I RCCGGY 1 cut(s) 739
Bse1I ACTGG 1 cut(s) 420
Bse3DI GCAATG 2 cut(s) 182, 379
BseBI CCWGG 2 cut(s) 513, 731
BseGI GGATG 3 cut(s) 403, 546, 668
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMI GCAATG 2 cut(s) 182, 379
BseNI ACTGG 1 cut(s) 420
BseSI GKGCMC 1 cut(s) 670
BseXI GCAGC 2 cut(s) 371, 691
BsgI GTGCAG 1 cut(s) 378
BshTI ACCGGT 1 cut(s) 739
BsiHKAI GWGCWC 1 cut(s) 670
BsiSI CCGG 3 cut(s) 36, 60, 740
BslFI GGGAC 2 cut(s) 280, 315
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 2 cut(s) 342, 554
BsmFI GGGAC 2 cut(s) 280, 315
BsmI GAATGC 2 cut(s) 251, 312
Bso31I GGTCTC 1 cut(s) 554
Bsp1286I GDGCHC 1 cut(s) 670
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 681
BspTNI GGTCTC 1 cut(s) 554
BsrDI GCAATG 2 cut(s) 182, 379
BsrFI RCCGGY 1 cut(s) 739
BsrI ACTGG 1 cut(s) 420
BssAI RCCGGY 1 cut(s) 739
BssMI GATC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 300
Bst2UI CCWGG 2 cut(s) 513, 731
Bst4CI ACNGT 3 cut(s) 115, 271, 502
Bst6I CTCTTC 1 cut(s) 52
BstBAI YACGTR 1 cut(s) 481
BstF5I GGATG 3 cut(s) 403, 546, 668
BstH2I RGCGCY 1 cut(s) 730
BstHHI GCGC 1 cut(s) 729
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 2 cut(s) 342, 554
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 2 cut(s) 596, 724
BstNI CCWGG 2 cut(s) 513, 731
BstSCI CCNGG 4 cut(s) 34, 59, 511, 729
BstSFI CTRYAG 1 cut(s) 677
BstSLI GKGCMC 1 cut(s) 670
BstSNI TACGTA 1 cut(s) 481
BstV1I GCAGC 2 cut(s) 371, 691
BtsCI GGATG 3 cut(s) 403, 546, 668
BtsIMutI CAGTG 3 cut(s) 413, 491, 498
CfoI GCGC 1 cut(s) 729
Cfr10I RCCGGY 1 cut(s) 739
Cfr13I GGNCC 2 cut(s) 383, 529
CseI GACGC 1 cut(s) 293
CspAI ACCGGT 1 cut(s) 739
CspCI CAANNNNNGTGG 2 cut(s) 507, 542
CviJI RGCY 7 cut(s) 16, 340, 362, 476, 590, 648, 682
CviKI_1 RGCY 7 cut(s) 16, 340, 362, 476, 590, 648, 682
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
DrdI GACNNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco105I TACGTA 1 cut(s) 481
Eco31I GGTCTC 1 cut(s) 554
Eco47I GGWCC 2 cut(s) 383, 529
EcoRII CCWGG 2 cut(s) 511, 729
EcoT22I ATGCAT 1 cut(s) 182
FaqI GGGAC 2 cut(s) 280, 315
Fnu4HI GCNGC 2 cut(s) 360, 680
FokI GGATG 3 cut(s) 410, 553, 675
Fsp4HI GCNGC 2 cut(s) 360, 680
FspBI CTAG 1 cut(s) 557
GlaI GCGC 1 cut(s) 728
GluI GCNGC 2 cut(s) 360, 680
HaeII RGCGCY 1 cut(s) 730
HapII CCGG 3 cut(s) 36, 60, 740
HgaI GACGC 1 cut(s) 293
HhaI GCGC 1 cut(s) 729
Hin6I GCGC 1 cut(s) 727
HinP1I GCGC 1 cut(s) 727
HincII GTYRAC 3 cut(s) 43, 226, 604
HindII GTYRAC 3 cut(s) 43, 226, 604
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 1 cut(s) 754
HpaI GTTAAC 1 cut(s) 226
HpaII CCGG 3 cut(s) 36, 60, 740
HphI GGTGA 1 cut(s) 754
Hpy166II GTNNAC 5 cut(s) 43, 226, 457, 604, 668
Hpy188I TCNGA 3 cut(s) 130, 387, 708
Hpy8I GTNNAC 5 cut(s) 43, 226, 457, 604, 668
HpyAV CCTTC 2 cut(s) 256, 776
HpyCH4III ACNGT 3 cut(s) 115, 271, 502
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 9 cut(s) 134, 175, 180, 249, 359, 413, 668, 679, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 596, 724
HpySE526I ACGT 1 cut(s) 480
HspAI GCGC 1 cut(s) 727
KspAI GTTAAC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 252
Lsp1109I GCAGC 2 cut(s) 371, 691
LweI GCATC 3 cut(s) 46, 121, 378
MaeI CTAG 1 cut(s) 557
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 3 cut(s) 27, 440, 711
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 3 cut(s) 39, 76, 254
MhlI GDGCHC 1 cut(s) 670
MluCI AATT 6 cut(s) 93, 293, 421, 450, 583, 592
MlyI GAGTC 1 cut(s) 763
MnlI CCTC 4 cut(s) 148, 208, 610, 652
Mph1103I ATGCAT 1 cut(s) 182
MseI TTAA 3 cut(s) 117, 141, 225
MspA1I CMGCKG 2 cut(s) 362, 682
MspI CCGG 3 cut(s) 36, 60, 740
MspR9I CCNGG 4 cut(s) 36, 61, 513, 731
Mva1269I GAATGC 2 cut(s) 251, 312
MvaI CCWGG 2 cut(s) 513, 731
MwoI GCNNNNNNNGC 2 cut(s) 596, 724
NciI CCSGG 2 cut(s) 36, 61
NdeII GATC 1 cut(s) 252
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 440
NsiI ATGCAT 1 cut(s) 182
PctI GAATGC 2 cut(s) 251, 312
PfoI TCCNGGA 1 cut(s) 511
PinAI ACCGGT 1 cut(s) 739
PkrI GCNGC 2 cut(s) 361, 681
PleI GAGTC 1 cut(s) 762
PpsI GAGTC 1 cut(s) 762
Ppu21I YACGTR 1 cut(s) 481
Psp6I CCWGG 2 cut(s) 511, 729
PspGI CCWGG 2 cut(s) 511, 729
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 2 cut(s) 383, 529
PstI CTGCAG 1 cut(s) 681
PvuII CAGCTG 2 cut(s) 362, 682
SaqAI TTAA 3 cut(s) 117, 141, 225
SatI GCNGC 2 cut(s) 360, 680
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 2 cut(s) 383, 529
SchI GAGTC 1 cut(s) 763
ScrFI CCNGG 4 cut(s) 36, 61, 513, 731
SduI GDGCHC 1 cut(s) 670
SfaNI GCATC 3 cut(s) 46, 121, 378
SfcI CTRYAG 1 cut(s) 677
SgrAI CRCCGGYG 1 cut(s) 739
SinI GGWCC 2 cut(s) 383, 529
SnaBI TACGTA 1 cut(s) 481
Sse9I AATT 6 cut(s) 93, 293, 421, 450, 583, 592
SsiI CCGC 1 cut(s) 427
SspI AATATT 2 cut(s) 210, 409
SspMI CTAG 1 cut(s) 557
StyD4I CCNGG 4 cut(s) 34, 59, 511, 729
TaaI ACNGT 3 cut(s) 115, 271, 502
TaiI ACGT 1 cut(s) 483
TasI AATT 6 cut(s) 93, 293, 421, 450, 583, 592
Tru1I TTAA 3 cut(s) 117, 141, 225
Tru9I TTAA 3 cut(s) 117, 141, 225
TscAI CASTG 3 cut(s) 420, 498, 505
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 2 cut(s) 359, 679
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 2 cut(s) 39, 457
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 3 cut(s) 420, 498, 505
VneI GTGCAC 1 cut(s) 666
VpaK11BI GGWCC 2 cut(s) 383, 529
XapI RAATTY 2 cut(s) 293, 421
XspI CTAG 1 cut(s) 557
Zsp2I ATGCAT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.