Rh6AG173500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000124
Physical Location & Seq
Reverse (-)
28097851 .. 28098979
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG173500.1

Sequence Viewer

Length: 957 bp
ATGCACATGAAGGACGACAACCAACCGATCGCTGATCTGTATTTGGACGGATTACCGGACGTTCCGTACTTCGTCGAAATTACACCACAAGGATCGGACAAGTGGTTTGACGGTCATTGGACCACTTTTGTTAACCGTGTCAGCAATGGTCAAGGACGGATGGTGTTGTGGTTCCATTACAGAGGGAATATGACCTTCATCGTACGCCGCTTCGATGTTAACGGCTGGTTGATGCTCGGAGCTCCCAAACCGCCCTTTGGATTTGTGGTGGACCAGTCAATGGAGCTGACTGGTATTTTGGACTCGTTCATGTCGGACATTTGGGATCGGAAAGTCACTGTGCCTATTGTACGAAGAGGTTCTCTGCATGACAAGCTAGTGGCAGACGGTGTGCCAGGCAGATGTGAGCTCCGTTGGGAAACAATTCCGTCAAGGCGGTGGACGGTTCACATGACAGGAAAGAAAGAGTTGACATTCGGTTCTGGATGGGACCGCTATCAAACGGATGCAGGGTTGGACGATTCTCTGTGCTGTGTTTTCACGCGCATTGGTCGATTGTGTTTCTCTGTTCAAGTATTCAACATCAAGAGAGGGATTCTGTCAATGAATCTCAGCCAAGCAGGCCTATCTAGAACTCTGCCCGATGTCAAAACAGAGGATGAAGCCTCAATGGAAGAAGAAGCCGCAGTTGGGGCCGATGTGGGGGGGCAGCTATATGAACCGGATATGGGACCATATGGTGAGCTTCCTCAAAGGGAACTCGTCCACACTGGATGGGCTGGATTCCGCTCTGGCACTTGTAAGATTCAACAATCTCATGGGTTACGTACCTTCTGCATGGCATGGGCAACATCTAATCTTACTAAATATGGGAACTTGACACCCTTACGCTTTTACGGTAGGCTTTCCGTTCTGACTTTGCTCGTAGCCTATTTGGAGATGATGAGAGACGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

36.08

Weight (kDa)

6.18

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 280
AccBSI CCGCTC 1 cut(s) 789
AccII CGCG 1 cut(s) 544
AciI CCGC 6 cut(s) 208, 251, 436, 493, 684, 787
AclWI GGATC 2 cut(s) 100, 333
AfaI GTAC 4 cut(s) 68, 204, 351, 829
AfiI CCNNNNNNNGG 5 cut(s) 257, 280, 690, 702, 728
AflIII ACRYGT 1 cut(s) 951
AgsI TTSAA 3 cut(s) 572, 580, 809
AjiI CACGTC 1 cut(s) 952
AjnI CCWGG 1 cut(s) 394
AjuI GAANNNNNNNTTGG 2 cut(s) 672, 704
AluBI AGCT 6 cut(s) 242, 286, 376, 409, 712, 745
AluI AGCT 6 cut(s) 242, 286, 376, 409, 712, 745
Alw21I GWGCWC 2 cut(s) 244, 411
Alw26I GTCTC 1 cut(s) 942
AlwI GGATC 2 cut(s) 100, 333
AoxI GGCC 2 cut(s) 622, 693
ApeKI GCWGC 1 cut(s) 709
ArsI GACNNNNNNTTYG 4 cut(s) 89, 121, 280, 312
Asp700I GAANNNNTTC 2 cut(s) 358, 423
AspLEI GCGC 1 cut(s) 546
AspS9I GGNCC 5 cut(s) 120, 271, 490, 693, 731
AsuHPI GGTGA 1 cut(s) 752
AvaII GGWCC 4 cut(s) 120, 271, 490, 731
BanII GRGCYC 2 cut(s) 244, 411
Bbv12I GWGCWC 2 cut(s) 244, 411
BbvI GCAGC 1 cut(s) 721
BccI CCATC 3 cut(s) 154, 480, 768
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 942
BfaI CTAG 2 cut(s) 377, 630
BglI GCCNNNNNGGC 1 cut(s) 621
BisI GCNGC 3 cut(s) 208, 684, 710
BlsI GCNGC 3 cut(s) 209, 685, 711
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 4 cut(s) 120, 271, 490, 731
BmgBI CACGTC 1 cut(s) 952
BmgT120I GGNCC 5 cut(s) 120, 271, 490, 693, 731
BmiI GGNNCC 4 cut(s) 173, 491, 694, 732
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 2 cut(s) 222, 496
BsaAI YACGTR 1 cut(s) 827
BsaWI WCCGGW 2 cut(s) 55, 721
Bsc4I CCNNNNNNNGG 5 cut(s) 257, 280, 690, 702, 728
Bse1I ACTGG 3 cut(s) 274, 295, 775
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 396
BseGI GGATG 5 cut(s) 165, 491, 511, 664, 779
BseLI CCNNNNNNNGG 5 cut(s) 257, 280, 690, 702, 728
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 625
BseNI ACTGG 3 cut(s) 274, 295, 775
BseXI GCAGC 1 cut(s) 721
Bsh1236I CGCG 1 cut(s) 544
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 2 cut(s) 624, 695
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 244, 411
BsiSI CCGG 2 cut(s) 56, 722
BsiWI CGTACG 1 cut(s) 202
BslFI GGGAC 2 cut(s) 503, 744
BslI CCNNNNNNNGG 5 cut(s) 257, 280, 690, 702, 728
BsmAI GTCTC 1 cut(s) 942
BsmBI CGTCTC 1 cut(s) 942
BsmFI GGGAC 2 cut(s) 503, 744
BsnI GGCC 2 cut(s) 624, 695
Bsp1286I GDGCHC 2 cut(s) 244, 411
Bsp143I GATC 4 cut(s) 27, 34, 92, 325
BspACI CCGC 6 cut(s) 208, 251, 436, 493, 684, 787
BspANI GGCC 2 cut(s) 624, 695
BspCNI CTCAG 1 cut(s) 624
BspFNI CGCG 1 cut(s) 544
BspLI GGNNCC 4 cut(s) 173, 491, 694, 732
BspPI GGATC 2 cut(s) 100, 333
BsrBI CCGCTC 1 cut(s) 789
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 3 cut(s) 274, 295, 775
BssMI GATC 4 cut(s) 27, 34, 92, 325
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 6 cut(s) 113, 137, 340, 389, 445, 899
Bst6I CTCTTC 1 cut(s) 349
BstBAI YACGTR 1 cut(s) 827
BstC8I GCNNGC 1 cut(s) 622
BstDEI CTNAG 1 cut(s) 611
BstF5I GGATG 5 cut(s) 165, 491, 511, 664, 779
BstFNI CGCG 1 cut(s) 544
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 4 cut(s) 30, 37, 95, 328
BstMAI GTCTC 1 cut(s) 942
BstMBI GATC 4 cut(s) 27, 34, 92, 325
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 3 cut(s) 373, 621, 692
BstNI CCWGG 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 394
BstSNI TACGTA 1 cut(s) 827
BstUI CGCG 1 cut(s) 544
BstV1I GCAGC 1 cut(s) 721
BsuRI GGCC 2 cut(s) 624, 695
BtrI CACGTC 1 cut(s) 952
BtsCI GGATG 5 cut(s) 165, 491, 511, 664, 779
BtsIMutI CAGTG 2 cut(s) 336, 768
Cac8I GCNNGC 1 cut(s) 622
CfoI GCGC 1 cut(s) 546
Cfr13I GGNCC 5 cut(s) 120, 271, 490, 693, 731
Csp6I GTAC 4 cut(s) 67, 203, 350, 828
CviAII CATG 7 cut(s) 7, 310, 368, 451, 818, 838, 843
CviQI GTAC 4 cut(s) 67, 203, 350, 828
DdeI CTNAG 1 cut(s) 611
DpnI GATC 4 cut(s) 29, 36, 94, 327
DpnII GATC 4 cut(s) 27, 34, 92, 325
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
Ecl136II GAGCTC 2 cut(s) 242, 409
Eco105I TACGTA 1 cut(s) 827
Eco147I AGGCCT 1 cut(s) 624
Eco24I GRGCYC 2 cut(s) 244, 411
Eco47I GGWCC 4 cut(s) 120, 271, 490, 731
Eco53kI GAGCTC 2 cut(s) 242, 409
EcoICRI GAGCTC 2 cut(s) 242, 409
EcoRII CCWGG 1 cut(s) 394
EcoT38I GRGCYC 2 cut(s) 244, 411
Esp3I CGTCTC 1 cut(s) 942
FaeI CATG 7 cut(s) 10, 313, 371, 454, 821, 841, 846
FaqI GGGAC 2 cut(s) 503, 744
FatI CATG 7 cut(s) 6, 309, 367, 450, 817, 837, 842
FauNDI CATATG 1 cut(s) 736
Fnu4HI GCNGC 3 cut(s) 208, 684, 710
FokI GGATG 5 cut(s) 172, 498, 518, 671, 786
FriOI GRGCYC 2 cut(s) 244, 411
Fsp4HI GCNGC 3 cut(s) 208, 684, 710
FspBI CTAG 2 cut(s) 377, 630
GlaI GCGC 1 cut(s) 545
GluI GCNGC 3 cut(s) 208, 684, 710
HaeIII GGCC 2 cut(s) 624, 695
HapII CCGG 2 cut(s) 56, 722
HhaI GCGC 1 cut(s) 546
Hin1II CATG 7 cut(s) 10, 313, 371, 454, 821, 841, 846
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HincII GTYRAC 3 cut(s) 133, 220, 471
HindII GTYRAC 3 cut(s) 133, 220, 471
HinfI GANTC 6 cut(s) 302, 521, 595, 607, 783, 805
HpaI GTTAAC 2 cut(s) 133, 220
HpaII CCGG 2 cut(s) 56, 722
HphI GGTGA 1 cut(s) 752
Hpy166II GTNNAC 7 cut(s) 133, 220, 271, 441, 448, 471, 766
Hpy188I TCNGA 5 cut(s) 97, 239, 316, 330, 915
Hpy188III TCNNGA 3 cut(s) 483, 586, 630
Hpy8I GTNNAC 7 cut(s) 133, 220, 271, 441, 448, 471, 766
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 3 cut(s) 4, 205, 841
HpyCH4III ACNGT 6 cut(s) 113, 137, 340, 389, 445, 899
HpyCH4IV ACGT 3 cut(s) 60, 826, 951
HpyCH4V TGCA 4 cut(s) 4, 367, 509, 837
HpyF10VI GCNNNNNNNGC 3 cut(s) 373, 621, 692
HpyF3I CTNAG 1 cut(s) 611
HpySE526I ACGT 3 cut(s) 60, 826, 951
Hsp92II CATG 7 cut(s) 10, 313, 371, 454, 821, 841, 846
HspAI GCGC 1 cut(s) 544
KspAI GTTAAC 2 cut(s) 133, 220
Kzo9I GATC 4 cut(s) 27, 34, 92, 325
LmnI GCTCC 4 cut(s) 239, 247, 283, 414
Lsp1109I GCAGC 1 cut(s) 721
LweI GCATC 2 cut(s) 222, 496
MaeI CTAG 2 cut(s) 377, 630
MaeII ACGT 3 cut(s) 60, 826, 951
MaeIII GTNAC 2 cut(s) 334, 822
MalI GATC 4 cut(s) 29, 36, 94, 327
MbiI CCGCTC 1 cut(s) 789
MboI GATC 4 cut(s) 27, 34, 92, 325
MboII GAAGA 3 cut(s) 366, 686, 689
MhlI GDGCHC 2 cut(s) 244, 411
MluCI AATT 2 cut(s) 78, 423
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 294, 495
MnlI CCTC 6 cut(s) 176, 350, 584, 649, 676, 759
MroXI GAANNNNTTC 2 cut(s) 358, 423
MseI TTAA 2 cut(s) 132, 219
MspI CCGG 2 cut(s) 56, 722
MspR9I CCNGG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 396
MvnI CGCG 1 cut(s) 544
MwoI GCNNNNNNNGC 3 cut(s) 373, 621, 692
NdeI CATATG 1 cut(s) 736
NdeII GATC 4 cut(s) 27, 34, 92, 325
NlaIII CATG 7 cut(s) 10, 313, 371, 454, 821, 841, 846
NlaIV GGNNCC 4 cut(s) 173, 491, 694, 732
NmuCI GTSAC 1 cut(s) 334
PceI AGGCCT 1 cut(s) 624
PdmI GAANNNNTTC 2 cut(s) 358, 423
PfeI GAWTC 5 cut(s) 521, 595, 607, 783, 805
Pfl23II CGTACG 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 3 cut(s) 209, 685, 711
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Ppu21I YACGTR 1 cut(s) 827
Psp124BI GAGCTC 2 cut(s) 244, 411
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspLI CGTACG 1 cut(s) 202
PspN4I GGNNCC 4 cut(s) 173, 491, 694, 732
PspPI GGNCC 5 cut(s) 120, 271, 490, 693, 731
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 4 cut(s) 68, 204, 351, 829
RsaNI GTAC 4 cut(s) 67, 203, 350, 828
SacI GAGCTC 2 cut(s) 244, 411
SaqAI TTAA 2 cut(s) 132, 219
SatI GCNGC 3 cut(s) 208, 684, 710
Sau3AI GATC 4 cut(s) 27, 34, 92, 325
Sau96I GGNCC 5 cut(s) 120, 271, 490, 693, 731
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 396
SduI GDGCHC 2 cut(s) 244, 411
SfaNI GCATC 2 cut(s) 222, 496
SinI GGWCC 4 cut(s) 120, 271, 490, 731
SnaBI TACGTA 1 cut(s) 827
Sse9I AATT 2 cut(s) 78, 423
SseBI AGGCCT 1 cut(s) 624
SsiI CCGC 6 cut(s) 208, 251, 436, 493, 684, 787
SspMI CTAG 2 cut(s) 377, 630
SstI GAGCTC 2 cut(s) 244, 411
StuI AGGCCT 1 cut(s) 624
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 6 cut(s) 113, 137, 340, 389, 445, 899
TaiI ACGT 3 cut(s) 63, 829, 954
TaqI TCGA 3 cut(s) 75, 213, 553
TasI AATT 2 cut(s) 78, 423
TauI GCSGC 2 cut(s) 210, 686
TfiI GAWTC 5 cut(s) 521, 595, 607, 783, 805
Tru1I TTAA 2 cut(s) 132, 219
Tru9I TTAA 2 cut(s) 132, 219
TscAI CASTG 2 cut(s) 343, 775
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 1 cut(s) 709
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 6 cut(s) 23, 187, 298, 620, 675, 732
TspGWI ACGGA 7 cut(s) 54, 63, 172, 401, 417, 518, 898
TspRI CASTG 2 cut(s) 343, 775
Van91I CCANNNNNTGG 1 cut(s) 280
VpaK11BI GGWCC 4 cut(s) 120, 271, 490, 731
XbaI TCTAGA 1 cut(s) 629
XmnI GAANNNNTTC 2 cut(s) 358, 423
XspI CTAG 2 cut(s) 377, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.