Rh1AG007000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000124
Physical Location & Seq
Forward (+)
1022373 .. 1022941
569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG007000.1

Sequence Viewer

Length: 498 bp
ATGGGAGAAATCGGCGATGTCAACCTCCCTTACTTCATAATAACTGTTGCTTTTCTGAAGAAGAACATCAAAAAGGCGGTGAGTGTATGCGTTGTGTGTGTAATGCACCCCACCCCAGCCTACACCAACAAAATGTTAACCGACAAGCCGAAAAATTCCCCCTCTATTCACAGAGAGGCACATGGTGGGCGACAACTGGGAATCGCTTCAATAAGATTGGCCGGCTTACCGGACATTGAGTACCTGGTACAGGTGGAAGAAGAAGGACCCGTAAAGTGGCTGAAAGATCGATGGGAAATATTTCTGGATCGTATCAGAGATGGGGAGAGACAGTTGGTATTGTTGTTCGAATACAACGGCAACATGGAGTTCACCATTAAGCGATTTAATGTCATTGGGCAGTTAATGTTGCAGAACCAGAAACCGCCCAACGGATATGAAGTGGACCGAGCAGGAACATTGACGGGGCTATTGGACTCCTTCATGTGGGACGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.79

Weight (kDa)

6.83

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 77, 425
AclWI GGATC 1 cut(s) 315
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 77
AdeI CACNNNGTG 1 cut(s) 185
AfaI GTAC 2 cut(s) 242, 249
AfiI CCNNNNNNNGG 4 cut(s) 250, 276, 431, 486
AgsI TTSAA 1 cut(s) 210
AjnI CCWGG 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 1 cut(s) 315
AoxI GGCC 1 cut(s) 219
ApoI RAATTY 1 cut(s) 154
Asp700I GAANNNNTTC 2 cut(s) 205, 300
AspS9I GGNCC 2 cut(s) 266, 445
AsuHPI GGTGA 2 cut(s) 91, 364
AsuII TTCGAA 1 cut(s) 348
AvaII GGWCC 2 cut(s) 266, 445
BccI CCATC 2 cut(s) 285, 314
BceAI ACGGC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 2 cut(s) 266, 445
BmgT120I GGNCC 2 cut(s) 266, 445
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 206
Bpu14I TTCGAA 1 cut(s) 348
Bsa29I ATCGAT 1 cut(s) 289
BsaWI WCCGGW 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 4 cut(s) 250, 276, 431, 486
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 245
BseCI ATCGAT 1 cut(s) 289
BseLI CCNNNNNNNGG 4 cut(s) 250, 276, 431, 486
BseNI ACTGG 1 cut(s) 201
BseYI CCCAGC 1 cut(s) 115
BshFI GGCC 1 cut(s) 221
BshVI ATCGAT 1 cut(s) 289
BsiSI CCGG 2 cut(s) 222, 230
BslI CCNNNNNNNGG 4 cut(s) 250, 276, 431, 486
BsmAI GTCTC 1 cut(s) 322
BsnI GGCC 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 348
Bsp143I GATC 2 cut(s) 286, 307
BspACI CCGC 2 cut(s) 77, 425
BspANI GGCC 1 cut(s) 221
BspDI ATCGAT 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 268
BspPI GGATC 1 cut(s) 315
BspT104I TTCGAA 1 cut(s) 348
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 1 cut(s) 201
BssAI RCCGGY 1 cut(s) 221
BssMI GATC 2 cut(s) 286, 307
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 46, 333
BstBI TTCGAA 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 223
BstENI CCTNNNNNAGG 1 cut(s) 248
BstKTI GATC 2 cut(s) 289, 310
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 2 cut(s) 286, 307
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
Bsu15I ATCGAT 1 cut(s) 289
BsuRI GGCC 1 cut(s) 221
BsuTUI ATCGAT 1 cut(s) 289
BtgZI GCGATG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 2 cut(s) 266, 445
ClaI ATCGAT 1 cut(s) 289
CsiI ACCWGGT 1 cut(s) 243
Csp6I GTAC 2 cut(s) 241, 248
CviAII CATG 3 cut(s) 182, 364, 484
CviJI RGCY 6 cut(s) 119, 148, 221, 225, 280, 469
CviKI_1 RGCY 6 cut(s) 119, 148, 221, 225, 280, 469
CviQI GTAC 2 cut(s) 241, 248
DpnI GATC 2 cut(s) 288, 309
DpnII GATC 2 cut(s) 286, 307
DraIII CACNNNGTG 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 266, 445
Eco57I CTGAAG 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 243
FaeI CATG 3 cut(s) 185, 367, 487
FaiI YATR 7 cut(s) 38, 88, 183, 365, 438, 485, 496
FatI CATG 3 cut(s) 181, 363, 483
GsaI CCCAGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 221
HapII CCGG 2 cut(s) 222, 230
Hin1II CATG 3 cut(s) 185, 367, 487
HincII GTYRAC 2 cut(s) 22, 138
HindII GTYRAC 2 cut(s) 22, 138
HinfI GANTC 2 cut(s) 201, 476
HpaI GTTAAC 1 cut(s) 138
HpaII CCGG 2 cut(s) 222, 230
HphI GGTGA 2 cut(s) 91, 364
Hpy166II GTNNAC 4 cut(s) 22, 138, 372, 445
Hpy188I TCNGA 2 cut(s) 57, 317
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 4 cut(s) 22, 138, 372, 445
HpyAV CCTTC 2 cut(s) 257, 490
HpyCH4III ACNGT 2 cut(s) 46, 333
HpyCH4V TGCA 2 cut(s) 106, 412
Hsp92II CATG 3 cut(s) 185, 367, 487
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
KspAI GTTAAC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 286, 307
MabI ACCWGGT 1 cut(s) 243
MalI GATC 2 cut(s) 288, 309
MboI GATC 2 cut(s) 286, 307
MboII GAAGA 4 cut(s) 70, 73, 269, 272
MluCI AATT 1 cut(s) 154
MlyI GAGTC 1 cut(s) 470
MnlI CCTC 3 cut(s) 35, 169, 172
MroNI GCCGGC 1 cut(s) 221
MroXI GAANNNNTTC 2 cut(s) 205, 300
MseI TTAA 4 cut(s) 137, 378, 387, 404
MspI CCGG 2 cut(s) 222, 230
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
NaeI GCCGGC 1 cut(s) 223
NdeII GATC 2 cut(s) 286, 307
NgoMIV GCCGGC 1 cut(s) 221
NlaIII CATG 3 cut(s) 185, 367, 487
NlaIV GGNNCC 1 cut(s) 268
NspV TTCGAA 1 cut(s) 348
PdiI GCCGGC 1 cut(s) 223
PdmI GAANNNNTTC 2 cut(s) 205, 300
PfeI GAWTC 1 cut(s) 201
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
PpuMI RGGWCCY 1 cut(s) 266
Psp5II RGGWCCY 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 2 cut(s) 266, 445
PspPPI RGGWCCY 1 cut(s) 266
RsaI GTAC 2 cut(s) 242, 249
RsaNI GTAC 2 cut(s) 241, 248
SaqAI TTAA 4 cut(s) 137, 378, 387, 404
Sau3AI GATC 2 cut(s) 286, 307
Sau96I GGNCC 2 cut(s) 266, 445
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 1 cut(s) 245
SetI ASST 3 cut(s) 27, 246, 255
SexAI ACCWGGT 1 cut(s) 243
SfuI TTCGAA 1 cut(s) 348
SinI GGWCC 2 cut(s) 266, 445
Sse9I AATT 1 cut(s) 154
SsiI CCGC 2 cut(s) 77, 425
SspI AATATT 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 46, 333
TaqI TCGA 2 cut(s) 289, 348
TaqII GACCGA 1 cut(s) 462
TasI AATT 1 cut(s) 154
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 4 cut(s) 137, 378, 387, 404
Tru9I TTAA 4 cut(s) 137, 378, 387, 404
TspDTI ATGAA 3 cut(s) 25, 453, 472
TspGWI ACGGA 1 cut(s) 447
VpaK11BI GGWCC 2 cut(s) 266, 445
XagI CCTNNNNNAGG 1 cut(s) 248
XapI RAATTY 1 cut(s) 154
XmnI GAANNNNTTC 2 cut(s) 205, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.