Rmu_sc0002045.1_g000028

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002045.1
OG0000124
Physical Location & Seq
Reverse (-)
149785 .. 151434
1650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002045.1_g000028.1.cds

Sequence Viewer

Length: 1005 bp
atgcaggttggcgaacacccaatcgacttcatgacattcggtgtcgagaagttgaagttccaaatggttacaatgggagaggaatctgtacacacagcagatataccatactttgtgaccacactggataatacagtggccggaagtcagacactgaaaatacccactgcttttaggaagctgcatatggcaggggatgacaatacggttgcagttcttaagttgatcggattacgcaacaatgcctggaaggtgcatgtggtgtccaaacgtagtggaaagtatttttctcgcggatgggactggtttgtacgggtcacttgtggagtagaagatacggtgacacttatgtttcgttacgaaggaaatatgaccttcagtttggttcgattcggagagcacggacaggttctgtattttcttccatggctgactgcagacaatcctgccaacaatctgaaacatatagctgatgactttgtagggtttgccgtcaacacatggggaccaagtgaaaccccgcccgcaatcggatatggctgcctgctttcgagactaaactgcgatggagtgatactggggaagataacatttgagctgtttcagaacaaagggcaatactggatgaccgaacccgcgatggttggcgatgcactcgtgttcggggaaggatggtataattttgtcaatgcaattggtttagacgagacgaaatgtgcaatcttcaaatatgaaggaaatttggcattcactgtaaatgtctttgacatgcccctgggtaccattgcagtggataatgtgcctcctcgaatatttggaggttccgaggaaggccacatggagggggtttcatataatacggtcgttggagaaatgattggcgtcggagggcaactcatggatctgcatcgtacccttctggggcgaccgaattgcctgttgacgatccaaaagggtcatggggttagtactttaatattgcaatactttgcacctacacattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

37.08

Weight (kDa)

5.67

Isoelectric Point (pI)

19.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 779
AccB1I GGYRCC 1 cut(s) 779
AccII CGCG 2 cut(s) 294, 638
AciI CCGC 4 cut(s) 294, 521, 525, 636
AclWI GGATC 2 cut(s) 909, 940
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 739
AcuI CTGAAG 1 cut(s) 361
AcyI GRCGYC 1 cut(s) 882
AfaI GTAC 5 cut(s) 90, 312, 781, 913, 970
AfiI CCNNNNNNNGG 3 cut(s) 530, 841, 921
AflII CTTAAG 1 cut(s) 218
AgsI TTSAA 2 cut(s) 55, 727
AjnI CCWGG 2 cut(s) 245, 774
AluBI AGCT 3 cut(s) 181, 470, 598
AluI AGCT 3 cut(s) 181, 470, 598
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 2 cut(s) 547, 701
AlwI GGATC 2 cut(s) 909, 940
AlwNI CAGNNNCTG 2 cut(s) 154, 412
AoxI GGCC 2 cut(s) 138, 832
ApeKI GCWGC 2 cut(s) 181, 540
ApoI RAATTY 1 cut(s) 739
ArsI GACNNNNNNTTYG 2 cut(s) 364, 396
Asp718I GGTACC 1 cut(s) 779
AspS9I GGNCC 1 cut(s) 506
AsuHPI GGTGA 1 cut(s) 352
AvaII GGWCC 1 cut(s) 506
BanI GGYRCC 1 cut(s) 779
BauI CACGAG 1 cut(s) 656
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 2 cut(s) 168, 527
BccI CCATC 4 cut(s) 291, 560, 634, 666
BceAI ACGGC 1 cut(s) 476
BcgI CGANNNNNNTGC 2 cut(s) 915, 949
BciT130I CCWGG 2 cut(s) 247, 776
BcoDI GTCTC 2 cut(s) 547, 701
BfmI CTRYAG 1 cut(s) 435
BfrI CTTAAG 1 cut(s) 218
BisI GCNGC 2 cut(s) 182, 541
BlsI GCNGC 2 cut(s) 183, 542
BmcAI AGTACT 1 cut(s) 970
Bme1390I CCNGG 2 cut(s) 247, 776
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 3 cut(s) 507, 781, 823
BmrFI CCNGG 2 cut(s) 247, 776
BmrI ACTGGG 1 cut(s) 587
BmsI GCATC 2 cut(s) 640, 916
BmuI ACTGGG 1 cut(s) 587
BplI GAGNNNNNCTC 2 cut(s) 879, 911
BsaBI GATNNNNATC 1 cut(s) 906
BsaHI GRCGYC 1 cut(s) 882
BsaJI CCNNGG 4 cut(s) 425, 774, 775, 825
Bsc4I CCNNNNNNNGG 3 cut(s) 530, 841, 921
Bse1I ACTGG 4 cut(s) 129, 308, 582, 626
Bse3DI GCAATG 1 cut(s) 783
Bse8I GATNNNNATC 1 cut(s) 906
BseBI CCWGG 2 cut(s) 247, 776
BseDI CCNNGG 4 cut(s) 425, 774, 775, 825
BseGI GGATG 4 cut(s) 202, 302, 630, 677
BseJI GATNNNNATC 1 cut(s) 906
BseLI CCNNNNNNNGG 3 cut(s) 530, 841, 921
BseMI GCAATG 1 cut(s) 783
BseNI ACTGG 4 cut(s) 129, 308, 582, 626
BseRI GAGGAG 1 cut(s) 795
BseXI GCAGC 2 cut(s) 168, 527
Bsh1236I CGCG 2 cut(s) 294, 638
Bsh1285I CGRYCG 2 cut(s) 864, 929
BshFI GGCC 2 cut(s) 140, 834
BshNI GGYRCC 1 cut(s) 779
BsiEI CGRYCG 2 cut(s) 864, 929
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 2 cut(s) 314, 519
BslI CCNNNNNNNGG 3 cut(s) 530, 841, 921
BsmAI GTCTC 2 cut(s) 547, 701
BsmBI CGTCTC 1 cut(s) 701
BsmFI GGGAC 2 cut(s) 314, 519
BsmI GAATGC 1 cut(s) 746
BsnI GGCC 2 cut(s) 140, 834
Bsp1286I GDGCHC 1 cut(s) 402
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 3 cut(s) 225, 901, 945
Bsp19I CCATGG 1 cut(s) 425
BspACI CCGC 4 cut(s) 294, 521, 525, 636
BspANI GGCC 2 cut(s) 140, 834
BspFNI CGCG 2 cut(s) 294, 638
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 3 cut(s) 507, 781, 823
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 2 cut(s) 909, 940
BspT107I GGYRCC 1 cut(s) 779
BspTI CTTAAG 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 783
BsrGI TGTACA 1 cut(s) 88
BsrI ACTGG 4 cut(s) 129, 308, 582, 626
BssECI CCNNGG 4 cut(s) 425, 774, 775, 825
BssMI GATC 3 cut(s) 225, 901, 945
BssNI GRCGYC 1 cut(s) 882
BssSI CACGAG 1 cut(s) 656
BssT1I CCWWGG 1 cut(s) 425
Bst2BI CACGAG 1 cut(s) 656
Bst2UI CCWGG 2 cut(s) 247, 776
Bst4CI ACNGT 5 cut(s) 136, 208, 340, 754, 862
BstACI GRCGYC 1 cut(s) 882
BstAFI CTTAAG 1 cut(s) 218
BstAUI TGTACA 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 525, 545
BstDSI CCRYGG 1 cut(s) 425
BstF5I GGATG 4 cut(s) 202, 302, 630, 677
BstFNI CGCG 2 cut(s) 294, 638
BstKTI GATC 3 cut(s) 228, 904, 948
BstMAI GTCTC 2 cut(s) 547, 701
BstMBI GATC 3 cut(s) 225, 901, 945
BstMCI CGRYCG 2 cut(s) 864, 929
BstNI CCWGG 2 cut(s) 247, 776
BstNSI RCATGY 2 cut(s) 260, 772
BstSCI CCNGG 2 cut(s) 245, 774
BstSFI CTRYAG 1 cut(s) 435
BstUI CGCG 2 cut(s) 294, 638
BstV1I GCAGC 2 cut(s) 168, 527
BstX2I RGATCY 1 cut(s) 901
BstXI CCANNNNNNTGG 1 cut(s) 790
BstYI RGATCY 1 cut(s) 901
BsuRI GGCC 2 cut(s) 140, 834
BtgI CCRYGG 1 cut(s) 425
BtgZI GCGATG 3 cut(s) 579, 653, 663
BtsCI GGATG 4 cut(s) 202, 302, 630, 677
BtsI GCAGTG 2 cut(s) 165, 795
BtsIMutI CAGTG 6 cut(s) 122, 141, 152, 165, 750, 795
Cac8I GCNNGC 2 cut(s) 525, 545
CaiI CAGNNNCTG 2 cut(s) 154, 412
CciI TCATGA 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 506
CseI GACGC 1 cut(s) 871
Csp6I GTAC 5 cut(s) 89, 311, 780, 912, 969
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CviAII CATG 8 cut(s) 31, 257, 426, 501, 769, 838, 898, 959
CviJI RGCY 7 cut(s) 140, 181, 430, 470, 540, 598, 834
CviKI_1 RGCY 7 cut(s) 140, 181, 430, 470, 540, 598, 834
CviQI GTAC 5 cut(s) 89, 311, 780, 912, 969
DpnI GATC 3 cut(s) 227, 903, 947
DpnII GATC 3 cut(s) 225, 901, 945
EaeI YGGCCR 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 506
Eco57I CTGAAG 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 245, 774
EcoT14I CCWWGG 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 425
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 8 cut(s) 34, 260, 429, 504, 772, 841, 901, 962
FaqI GGGAC 2 cut(s) 314, 519
FatI CATG 8 cut(s) 30, 256, 425, 500, 768, 837, 897, 958
FauI CCCGC 3 cut(s) 528, 532, 643
FauNDI CATATG 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 182, 541
FokI GGATG 4 cut(s) 209, 309, 637, 684
Fsp4HI GCNGC 2 cut(s) 182, 541
GluI GCNGC 2 cut(s) 182, 541
HaeIII GGCC 2 cut(s) 140, 834
HapII CCGG 1 cut(s) 141
HgaI GACGC 1 cut(s) 871
Hin1I GRCGYC 1 cut(s) 882
Hin1II CATG 8 cut(s) 34, 260, 429, 504, 772, 841, 901, 962
HincII GTYRAC 2 cut(s) 496, 942
HindII GTYRAC 2 cut(s) 496, 942
HinfI GANTC 2 cut(s) 83, 390
HpaII CCGG 1 cut(s) 141
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 3 cut(s) 91, 496, 942
Hpy188I TCNGA 8 cut(s) 150, 230, 395, 459, 533, 606, 826, 887
Hpy188III TCNNGA 3 cut(s) 31, 46, 552
Hpy8I GTNNAC 3 cut(s) 91, 496, 942
Hpy99I CGWCG 1 cut(s) 887
HpyAV CCTTC 7 cut(s) 244, 356, 385, 662, 728, 824, 926
HpyCH4III ACNGT 5 cut(s) 136, 208, 340, 754, 862
HpyCH4IV ACGT 1 cut(s) 271
HpySE526I ACGT 1 cut(s) 271
Hsp92I GRCGYC 1 cut(s) 882
Hsp92II CATG 8 cut(s) 34, 260, 429, 504, 772, 841, 901, 962
KpnI GGTACC 1 cut(s) 783
Kzo9I GATC 3 cut(s) 225, 901, 945
Lsp1109I GCAGC 2 cut(s) 168, 527
LweI GCATC 2 cut(s) 640, 916
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 5 cut(s) 67, 115, 316, 340, 356
MalI GATC 3 cut(s) 227, 903, 947
MboI GATC 3 cut(s) 225, 901, 945
MboII GAAGA 4 cut(s) 344, 413, 595, 715
MfeI CAATTG 1 cut(s) 693
MflI RGATCY 1 cut(s) 901
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 4 cut(s) 679, 693, 739, 931
MmeI TCCRAC 2 cut(s) 847, 865
MnlI CCTC 7 cut(s) 73, 812, 813, 816, 820, 835, 881
MseI TTAA 2 cut(s) 219, 974
MslI CAYNNNNRTG 1 cut(s) 788
MspCI CTTAAG 1 cut(s) 218
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 247, 776
MunI CAATTG 1 cut(s) 693
Mva1269I GAATGC 1 cut(s) 746
MvaI CCWGG 2 cut(s) 247, 776
MvnI CGCG 2 cut(s) 294, 638
NcoI CCATGG 1 cut(s) 425
NdeI CATATG 1 cut(s) 186
NdeII GATC 3 cut(s) 225, 901, 945
NlaIII CATG 8 cut(s) 34, 260, 429, 504, 772, 841, 901, 962
NlaIV GGNNCC 3 cut(s) 507, 781, 823
NmuCI GTSAC 3 cut(s) 115, 316, 340
NspI RCATGY 2 cut(s) 260, 772
PagI TCATGA 1 cut(s) 30
PasI CCCWGGG 1 cut(s) 775
PctI GAATGC 1 cut(s) 746
PfeI GAWTC 2 cut(s) 83, 390
PkrI GCNGC 2 cut(s) 183, 542
Psp6I CCWGG 2 cut(s) 245, 774
PspGI CCWGG 2 cut(s) 245, 774
PspN4I GGNNCC 3 cut(s) 507, 781, 823
PspPI GGNCC 1 cut(s) 506
PstI CTGCAG 1 cut(s) 439
PstNI CAGNNNCTG 2 cut(s) 154, 412
PsuI RGATCY 1 cut(s) 901
RsaI GTAC 5 cut(s) 90, 312, 781, 913, 970
RsaNI GTAC 5 cut(s) 89, 311, 780, 912, 969
RseI CAYNNNNRTG 1 cut(s) 788
SaqAI TTAA 2 cut(s) 219, 974
SatI GCNGC 2 cut(s) 182, 541
Sau3AI GATC 3 cut(s) 225, 901, 945
Sau96I GGNCC 1 cut(s) 506
ScaI AGTACT 1 cut(s) 970
ScrFI CCNGG 2 cut(s) 247, 776
SduI GDGCHC 1 cut(s) 402
SfaNI GCATC 2 cut(s) 640, 916
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 788
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 4 cut(s) 679, 693, 739, 931
SsiI CCGC 4 cut(s) 294, 521, 525, 636
SspI AATATT 2 cut(s) 813, 978
StyD4I CCNGG 2 cut(s) 245, 774
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 5 cut(s) 136, 208, 340, 754, 862
TaiI ACGT 1 cut(s) 274
TaqI TCGA 5 cut(s) 24, 45, 388, 551, 808
TaqII GACCGA 2 cut(s) 644, 943
TasI AATT 4 cut(s) 679, 693, 739, 931
TatI WGTACW 2 cut(s) 88, 968
TfiI GAWTC 2 cut(s) 83, 390
Tru1I TTAA 2 cut(s) 219, 974
Tru9I TTAA 2 cut(s) 219, 974
TscAI CASTG 6 cut(s) 129, 141, 159, 172, 757, 795
TseFI GTSAC 3 cut(s) 115, 316, 340
TseI GCWGC 2 cut(s) 181, 540
Tsp45I GTSAC 3 cut(s) 115, 316, 340
TspDTI ATGAA 3 cut(s) 19, 747, 840
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 6 cut(s) 129, 141, 159, 172, 757, 795
Vha464I CTTAAG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 506
XapI RAATTY 1 cut(s) 739
XceI RCATGY 2 cut(s) 260, 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 956
ZrmI AGTACT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.