Rh6CG419900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000124
Physical Location & Seq
Forward (+)
60311552 .. 60311914
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG419900.1

Sequence Viewer

Length: 363 bp
ATGTGCGACAGAGAAGGAAGGATCCAGTACTGTCATCTTAAGGAAATAGTACGGGACCGTGAGGAAGCCGACGACAAGTTCAGGATCTCATTTTCCTTGCTTGCACTAGGTTTGGTTCTGTGCCCTACAATAGATGACGCTGTTGATACGTCTCTGATTCTACCCCTTCTGGAAATGAGACGCATTGGGCAGAAGAACTGGGCTTCCTTTTGTCTCCAAAGATTGCTAGACTCTGTGACGGCCCAGAGGGAACATGGGGACGGTGTTGTTGGAGGGTGTGTGCTCTTCCTCCAGGTTCTATACTTCGAGAAGGTCGGCTCGGCTTGTTTTCATATTGATACTATACTTCCACTTAAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

120

Amino Acids

13.57

Weight (kDa)

5.54

Isoelectric Point (pI)

30.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 16, 29, 92
AfaI GTAC 2 cut(s) 29, 51
AflII CTTAAG 2 cut(s) 38, 353
AjnI CCWGG 1 cut(s) 291
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 3 cut(s) 156, 172, 218
AlwI GGATC 3 cut(s) 16, 29, 92
AoxI GGCC 2 cut(s) 240, 357
AspS9I GGNCC 2 cut(s) 55, 241
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 125
BamHI GGATCC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 285
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 293
BcoDI GTCTC 3 cut(s) 156, 172, 218
BfaI CTAG 3 cut(s) 107, 227, 361
BfrI CTTAAG 2 cut(s) 38, 353
BmcAI AGTACT 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 55, 241
BmiI GGNNCC 2 cut(s) 23, 56
BmrFI CCNGG 1 cut(s) 293
BmrI ACTGGG 1 cut(s) 208
BmuI ACTGGG 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bse1I ACTGG 2 cut(s) 25, 203
BseBI CCWGG 1 cut(s) 293
BseNI ACTGG 2 cut(s) 25, 203
BseSI GKGCMC 1 cut(s) 125
BshFI GGCC 2 cut(s) 242, 359
BsiHKAI GWGCWC 1 cut(s) 285
BslFI GGGAC 2 cut(s) 68, 272
BsmAI GTCTC 3 cut(s) 156, 172, 218
BsmBI CGTCTC 2 cut(s) 156, 172
BsmFI GGGAC 2 cut(s) 68, 272
BsnI GGCC 2 cut(s) 242, 359
Bsp1286I GDGCHC 2 cut(s) 125, 285
Bsp143I GATC 2 cut(s) 21, 84
BspANI GGCC 2 cut(s) 242, 359
BspLI GGNNCC 2 cut(s) 23, 56
BspPI GGATC 3 cut(s) 16, 29, 92
BspQI GCTCTTC 1 cut(s) 290
BspTI CTTAAG 2 cut(s) 38, 353
BsrI ACTGG 2 cut(s) 25, 203
BssMI GATC 2 cut(s) 21, 84
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 3 cut(s) 32, 59, 263
Bst6I CTCTTC 1 cut(s) 290
BstAFI CTTAAG 2 cut(s) 38, 353
BstC8I GCNNGC 1 cut(s) 102
BstKTI GATC 2 cut(s) 24, 87
BstMAI GTCTC 3 cut(s) 156, 172, 218
BstMBI GATC 2 cut(s) 21, 84
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 125
BstX2I RGATCY 2 cut(s) 21, 84
BstYI RGATCY 2 cut(s) 21, 84
BsuRI GGCC 2 cut(s) 242, 359
Cac8I GCNNGC 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 55, 241
CseI GACGC 2 cut(s) 146, 189
Csp6I GTAC 2 cut(s) 28, 50
CviAII CATG 1 cut(s) 254
CviJI RGCY 6 cut(s) 68, 203, 242, 318, 323, 359
CviKI_1 RGCY 6 cut(s) 68, 203, 242, 318, 323, 359
CviQI GTAC 2 cut(s) 28, 50
DpnI GATC 2 cut(s) 23, 86
DpnII GATC 2 cut(s) 21, 84
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Eco147I AGGCCT 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 291
Esp3I CGTCTC 2 cut(s) 156, 172
FaeI CATG 1 cut(s) 257
FaiI YATR 4 cut(s) 255, 301, 333, 344
FaqI GGGAC 2 cut(s) 68, 272
FatI CATG 1 cut(s) 253
FspBI CTAG 3 cut(s) 107, 227, 361
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 2 cut(s) 242, 359
HgaI GACGC 2 cut(s) 146, 189
Hin1II CATG 1 cut(s) 257
HinfI GANTC 2 cut(s) 157, 230
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 3 cut(s) 82, 170, 307
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 4 cut(s) 8, 12, 176, 304
HpyCH4III ACNGT 3 cut(s) 32, 59, 263
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 1 cut(s) 257
Kzo9I GATC 2 cut(s) 21, 84
LguI GCTCTTC 1 cut(s) 290
LpnPI CCDG 7 cut(s) 38, 67, 155, 184, 257, 278, 305
MaeI CTAG 3 cut(s) 107, 227, 361
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 235
MalI GATC 2 cut(s) 23, 86
MboI GATC 2 cut(s) 21, 84
MboII GAAGA 2 cut(s) 205, 277
MflI RGATCY 2 cut(s) 21, 84
MhlI GDGCHC 2 cut(s) 125, 285
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 4 cut(s) 55, 240, 266, 299
MseI TTAA 2 cut(s) 39, 354
MspCI CTTAAG 2 cut(s) 38, 353
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
NdeII GATC 2 cut(s) 21, 84
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 2 cut(s) 23, 56
NmeAIII GCCGAG 1 cut(s) 299
NmuCI GTSAC 1 cut(s) 235
PceI AGGCCT 1 cut(s) 359
PciSI GCTCTTC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 157
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 23, 56
PspPI GGNCC 2 cut(s) 55, 241
PsuI RGATCY 2 cut(s) 21, 84
RsaI GTAC 2 cut(s) 29, 51
RsaNI GTAC 2 cut(s) 28, 50
SapI GCTCTTC 1 cut(s) 290
SaqAI TTAA 2 cut(s) 39, 354
Sau3AI GATC 2 cut(s) 21, 84
Sau96I GGNCC 2 cut(s) 55, 241
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 2 cut(s) 125, 285
SetI ASST 4 cut(s) 112, 152, 297, 315
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 2 cut(s) 38, 353
SmoI CTYRAG 2 cut(s) 38, 353
SseBI AGGCCT 1 cut(s) 359
SspMI CTAG 3 cut(s) 107, 227, 361
StuI AGGCCT 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 3 cut(s) 32, 59, 263
TaiI ACGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 306
TatI WGTACW 1 cut(s) 27
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 2 cut(s) 39, 354
Tru9I TTAA 2 cut(s) 39, 354
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 320
Vha464I CTTAAG 2 cut(s) 38, 353
VpaK11BI GGWCC 1 cut(s) 55
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XspI CTAG 3 cut(s) 107, 227, 361
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.