Rh6CG205200

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000124
Physical Location & Seq
Reverse (-)
34227649 .. 34231650
4002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG205200.1

Sequence Viewer

Length: 468 bp
ATGGGCGGTGGAGGACTCCCATATGGGGTCTCAAACGCTGAAAGAGGCAAGAGAGCCAGTGAGCTCGTAATTGGGGACTTGGTGACGCATTCCAACCCCGCCGAGTTCTCATTCACTGTTGCAGATCTGTCACTGGAAAAGGTGGATGCAGTAGCTGAAATAGGCTACGAGAGTCTGTTGGATATTGGCTGCAACACCCTTGTCGGGCCCGTTTGGAGGATGATGGTCCAACAAATCGACCTCAGGGACCACACAGTGTCAATTCACGGTCGCACATATCCAATAAACGCGGAGGAGTTTGGCCGCATTATGGGAGTGCGTGATGGGGGTTCAGATTTTGATTTGGGAGCTGGTGCAGATGTGGCTGAATATGGGGCGATTGTCGAAGACCTGTGCGACAATGCAGGCTTTGTAGGAAGTGCAATGAAACATTCAGAAGACTGGAGGGGAAAGATCAGAATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

155

Amino Acids

16.57

Weight (kDa)

4.63

Isoelectric Point (pI)

20.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 290
AciI CCGC 4 cut(s) 6, 99, 290, 304
AcoI YGGCCR 1 cut(s) 301
AdeI CACNNNGTG 1 cut(s) 256
AfiI CCNNNNNNNGG 4 cut(s) 25, 204, 216, 310
AluBI AGCT 3 cut(s) 64, 155, 350
AluI AGCT 3 cut(s) 64, 155, 350
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 34
AlwNI CAGNNNCTG 1 cut(s) 155
AoxI GGCC 2 cut(s) 206, 301
ApaI GGGCCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 189
AspS9I GGNCC 4 cut(s) 206, 207, 226, 247
AsuHPI GGTGA 1 cut(s) 94
AvaII GGWCC 2 cut(s) 226, 247
AxyI CCTNAGG 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 210
BanII GRGCYC 2 cut(s) 66, 210
BbsI GAAGAC 2 cut(s) 393, 444
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 176
BccI CCATC 2 cut(s) 217, 317
BcoDI GTCTC 1 cut(s) 34
BglII AGATCT 1 cut(s) 124
BisI GCNGC 2 cut(s) 190, 304
BlsI GCNGC 2 cut(s) 191, 305
Bme18I GGWCC 2 cut(s) 226, 247
BmgT120I GGNCC 4 cut(s) 206, 207, 226, 247
BmiI GGNNCC 2 cut(s) 208, 248
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 2 cut(s) 393, 444
BpmI CTGGAG 1 cut(s) 463
BsaI GGTCTC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 204, 216, 310
Bse1I ACTGG 3 cut(s) 57, 138, 446
Bse21I CCTNAGG 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 429
BseGI GGATG 2 cut(s) 151, 225
BseLI CCNNNNNNNGG 4 cut(s) 25, 204, 216, 310
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 3 cut(s) 57, 138, 446
BseRI GAGGAG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 210
BseXI GCAGC 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 2 cut(s) 208, 303
BsiEI CGRYCG 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 66
BslFI GGGAC 2 cut(s) 89, 260
BslI CCNNNNNNNGG 4 cut(s) 25, 204, 216, 310
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 2 cut(s) 89, 260
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 2 cut(s) 208, 303
Bso31I GGTCTC 1 cut(s) 34
Bsp120I GGGCCC 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 66, 210
Bsp143I GATC 2 cut(s) 124, 453
BspACI CCGC 4 cut(s) 6, 99, 290, 304
BspANI GGCC 2 cut(s) 208, 303
BspCNI CTCAG 1 cut(s) 255
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 2 cut(s) 208, 248
BspTNI GGTCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 3 cut(s) 57, 138, 446
BssMI GATC 2 cut(s) 124, 453
Bst4CI ACNGT 3 cut(s) 118, 256, 269
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 151, 225
BstFNI CGCG 1 cut(s) 290
BstKTI GATC 2 cut(s) 127, 456
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 124, 453
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstSLI GKGCMC 1 cut(s) 210
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 176
BstV2I GAAGAC 2 cut(s) 393, 444
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
Bsu36I CCTNAGG 1 cut(s) 242
BsuRI GGCC 2 cut(s) 208, 303
BtsCI GGATG 2 cut(s) 151, 225
BtsIMutI CAGTG 4 cut(s) 64, 114, 131, 261
Cac8I GCNNGC 1 cut(s) 406
CaiI CAGNNNCTG 1 cut(s) 155
Cfr13I GGNCC 4 cut(s) 206, 207, 226, 247
CseI GACGC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 242
DpnI GATC 2 cut(s) 126, 455
DpnII GATC 2 cut(s) 124, 453
DraIII CACNNNGTG 1 cut(s) 256
EaeI YGGCCR 1 cut(s) 301
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 2 cut(s) 66, 210
Eco31I GGTCTC 1 cut(s) 34
Eco47I GGWCC 2 cut(s) 226, 247
Eco53kI GAGCTC 1 cut(s) 64
Eco81I CCTNAGG 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 64
EcoT38I GRGCYC 2 cut(s) 66, 210
FaiI YATR 5 cut(s) 22, 24, 277, 311, 372
FaqI GGGAC 2 cut(s) 89, 260
FauI CCCGC 1 cut(s) 106
FauNDI CATATG 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 190, 304
FokI GGATG 2 cut(s) 158, 232
FriOI GRGCYC 2 cut(s) 66, 210
Fsp4HI GCNGC 2 cut(s) 190, 304
GluI GCNGC 2 cut(s) 190, 304
GsuI CTGGAG 1 cut(s) 463
HaeIII GGCC 2 cut(s) 208, 303
HgaI GACGC 1 cut(s) 94
HinfI GANTC 2 cut(s) 15, 172
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 3 cut(s) 334, 436, 458
HpyCH4III ACNGT 3 cut(s) 118, 256, 269
HpyCH4V TGCA 6 cut(s) 122, 149, 192, 356, 404, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 1 cut(s) 242
Kzo9I GATC 2 cut(s) 124, 453
LmnI GCTCC 1 cut(s) 347
LpnPI CCDG 7 cut(s) 70, 119, 229, 336, 390, 404, 427
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 1 cut(s) 136
MaeIII GTNAC 2 cut(s) 82, 129
MalI GATC 2 cut(s) 126, 455
MboI GATC 2 cut(s) 124, 453
MboII GAAGA 2 cut(s) 398, 449
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 2 cut(s) 66, 210
MluCI AATT 3 cut(s) 69, 261, 459
MlyI GAGTC 2 cut(s) 9, 181
MmeI TCCRAC 3 cut(s) 117, 159, 253
MnlI CCTC 6 cut(s) 5, 38, 210, 251, 286, 438
MseI TTAA 1 cut(s) 466
Mva1269I GAATGC 1 cut(s) 88
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 362
NdeI CATATG 1 cut(s) 22
NdeII GATC 2 cut(s) 124, 453
NlaIV GGNNCC 2 cut(s) 208, 248
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 2 cut(s) 82, 129
PctI GAATGC 1 cut(s) 88
PkrI GCNGC 2 cut(s) 191, 305
PleI GAGTC 2 cut(s) 9, 180
PpsI GAGTC 2 cut(s) 9, 180
Psp124BI GAGCTC 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 208, 248
PspOMI GGGCCC 1 cut(s) 206
PspPI GGNCC 4 cut(s) 206, 207, 226, 247
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 124
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 466
SatI GCNGC 2 cut(s) 190, 304
Sau3AI GATC 2 cut(s) 124, 453
Sau96I GGNCC 4 cut(s) 206, 207, 226, 247
SchI GAGTC 2 cut(s) 9, 181
SduI GDGCHC 2 cut(s) 66, 210
SetI ASST 6 cut(s) 66, 144, 157, 243, 352, 393
SfaNI GCATC 1 cut(s) 136
SinI GGWCC 2 cut(s) 226, 247
Sse9I AATT 3 cut(s) 69, 261, 459
SsiI CCGC 4 cut(s) 6, 99, 290, 304
SstI GAGCTC 1 cut(s) 66
TaaI ACNGT 3 cut(s) 118, 256, 269
TaqI TCGA 2 cut(s) 237, 384
TasI AATT 3 cut(s) 69, 261, 459
TauI GCSGC 1 cut(s) 306
Tru1I TTAA 1 cut(s) 466
Tru9I TTAA 1 cut(s) 466
TscAI CASTG 4 cut(s) 64, 121, 138, 261
TseFI GTSAC 2 cut(s) 82, 129
TseI GCWGC 1 cut(s) 189
Tsp45I GTSAC 2 cut(s) 82, 129
TspDTI ATGAA 1 cut(s) 440
TspRI CASTG 4 cut(s) 64, 121, 138, 261
VpaK11BI GGWCC 2 cut(s) 226, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.