Rh2AG642500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000124
Physical Location & Seq
Reverse (-)
86498264 .. 86500930
2667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG642500.1

Sequence Viewer

Length: 924 bp
ATGTGTTGTGCTCAATCGCAGCCTGCCATCCCAAGGGGTCGCCTATACGCGGCCATCCGTAATGACAGTGCTCTAGGACTGTGTCTCTTAAGGTGGGAGTCAAGGGAGGGGTTGATATTCTGGCATGTTGAGCTGACTAGAGGAGTAGGTTGCATGACTTTTGGTGAAGGGTGGAACAGATTTGCAGCCCACAATCGGCTGCTTGATGGAAAGCGGTTTTGTGTCTTCACTTACAGGGGTGGCCGTGAGTTCTCCGTCCTTGTTTTCCACAAACGAAGGGGTACGTTGATGATAAATGTCGATGAATATGCCGTGGTTCAGCAGGGGATGCAGGAGGTAAATGCTGATGAGGCTGAGCAGGATATGGACATTGGCGGTGTAGAGGGGGCTGGTTTGGGGGCTTCTACTAATGGGCCTGTGTACGAGGACGTTGTCGGTGACTACCAACGCCTCCGTCATTGTGATGTCAGGATTCAGCAAGGTCATGGAGTGTTTCTCACAAAAGATGCTCGTTATCTGTTTCCTAGAAAGGGTAACGCATGTGTTAACCTACAAAGGTCAGACGGAGCCGTATGGGATATGGGGGTCGCGCCTACGAACGATACTCACTACCTCACAAGGGGCTACAGTAAATTCAAGGAGTTCAATGGACTACGCAAGGGTCAGCTGCTCCGACTATATCATCTCAAAACGGATGTTCGTATTCGACATATGAGGCTAGTTTATGAATCAGTACGTTTTCCCGATGGTTCACGCGGGCGAAATTCTAGAGGTTTCATGAATCAGTACGTTATCAACGTACTGATATATAGGGTTTCGTGTTTGGGTTTAGGGTTCATGGCTGATTTCATCATCACCTTAGGTGGCTCAGGGTTTACGGGTTATATCGGGTTTAGGTTTTGGGCATTACGGTGTGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

34.78

Weight (kDa)

9.34

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 50, 590, 756
AciI CCGC 4 cut(s) 50, 214, 375, 756
AcoI YGGCCR 2 cut(s) 51, 241
AcsI RAATTY 2 cut(s) 632, 763
AfaI GTAC 5 cut(s) 283, 422, 735, 788, 801
AfiI CCNNNNNNNGG 5 cut(s) 33, 49, 195, 530, 619
AflII CTTAAG 1 cut(s) 88
AgsI TTSAA 2 cut(s) 637, 646
AluBI AGCT 2 cut(s) 133, 667
AluI AGCT 2 cut(s) 133, 667
Alw21I GWGCWC 2 cut(s) 13, 73
Alw26I GTCTC 1 cut(s) 89
AoxI GGCC 3 cut(s) 51, 241, 413
ApeKI GCWGC 4 cut(s) 19, 185, 199, 667
ApoI RAATTY 2 cut(s) 632, 763
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 3 cut(s) 176, 449, 847
AxyI CCTNAGG 1 cut(s) 859
BbsI GAAGAC 1 cut(s) 217
Bbv12I GWGCWC 2 cut(s) 13, 73
BbvI GCAGC 4 cut(s) 31, 186, 197, 654
BccI CCATC 4 cut(s) 35, 62, 200, 740
BceAI ACGGC 3 cut(s) 228, 296, 554
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 5 cut(s) 74, 138, 525, 719, 768
BfmI CTRYAG 1 cut(s) 625
BfrI CTTAAG 1 cut(s) 88
BisI GCNGC 5 cut(s) 20, 51, 186, 200, 668
BlpI GCTNAGC 1 cut(s) 354
BlsI GCNGC 5 cut(s) 21, 52, 187, 201, 669
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 1 cut(s) 568
BmsI GCATC 2 cut(s) 318, 496
BpiI GAAGAC 1 cut(s) 217
BplI GAGNNNNNCTC 2 cut(s) 480, 512
Bpu10I CCTNAGC 1 cut(s) 868
Bpu1102I GCTNAGC 1 cut(s) 354
BsaJI CCNNGG 2 cut(s) 32, 312
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 49, 195, 530, 619
Bse21I CCTNAGG 1 cut(s) 859
BseDI CCNNGG 2 cut(s) 32, 312
BseGI GGATG 4 cut(s) 27, 54, 333, 700
BseLI CCNNNNNNNGG 5 cut(s) 33, 49, 195, 530, 619
BseMII CTCAG 2 cut(s) 345, 882
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 4 cut(s) 31, 186, 197, 654
Bsh1236I CGCG 3 cut(s) 50, 590, 756
BshFI GGCC 3 cut(s) 53, 243, 415
BsiHKAI GWGCWC 2 cut(s) 13, 73
BslI CCNNNNNNNGG 5 cut(s) 33, 49, 195, 530, 619
BsmAI GTCTC 1 cut(s) 89
BsnI GGCC 3 cut(s) 53, 243, 415
Bsp1286I GDGCHC 2 cut(s) 13, 73
Bsp1720I GCTNAGC 1 cut(s) 354
BspACI CCGC 4 cut(s) 50, 214, 375, 756
BspANI GGCC 3 cut(s) 53, 243, 415
BspCNI CTCAG 2 cut(s) 346, 881
BspFNI CGCG 3 cut(s) 50, 590, 756
BspHI TCATGA 1 cut(s) 777
BspLI GGNNCC 1 cut(s) 568
BspTI CTTAAG 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 32, 312
BssT1I CCWWGG 1 cut(s) 32
Bst4CI ACNGT 4 cut(s) 68, 81, 629, 912
BstAFI CTTAAG 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 328
BstC8I GCNNGC 2 cut(s) 24, 758
BstDEI CTNAG 3 cut(s) 354, 859, 868
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 4 cut(s) 27, 54, 333, 700
BstFNI CGCG 3 cut(s) 50, 590, 756
BstHHI GCGC 1 cut(s) 592
BstMAI GTCTC 1 cut(s) 89
BstMWI GCNNNNNNNGC 3 cut(s) 130, 328, 350
BstNSI RCATGY 2 cut(s) 128, 543
BstSFI CTRYAG 1 cut(s) 625
BstUI CGCG 3 cut(s) 50, 590, 756
BstV1I GCAGC 4 cut(s) 31, 186, 197, 654
BstV2I GAAGAC 1 cut(s) 217
Bsu36I CCTNAGG 1 cut(s) 859
BsuRI GGCC 3 cut(s) 53, 243, 415
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 4 cut(s) 27, 54, 333, 700
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 24, 758
CciI TCATGA 1 cut(s) 777
CfoI GCGC 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 413
Csp6I GTAC 5 cut(s) 282, 421, 734, 787, 800
CviAII CATG 6 cut(s) 125, 154, 485, 540, 778, 838
CviQI GTAC 5 cut(s) 282, 421, 734, 787, 800
DdeI CTNAG 3 cut(s) 354, 859, 868
EaeI YGGCCR 2 cut(s) 51, 241
Eco130I CCWWGG 1 cut(s) 32
Eco81I CCTNAGG 1 cut(s) 859
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 6 cut(s) 128, 157, 488, 543, 781, 841
FatI CATG 6 cut(s) 124, 153, 484, 539, 777, 837
FauI CCCGC 1 cut(s) 749
FauNDI CATATG 1 cut(s) 711
Fnu4HI GCNGC 5 cut(s) 20, 51, 186, 200, 668
FokI GGATG 4 cut(s) 14, 41, 340, 707
Fsp4HI GCNGC 5 cut(s) 20, 51, 186, 200, 668
FspBI CTAG 5 cut(s) 74, 138, 525, 719, 768
GlaI GCGC 1 cut(s) 591
GluI GCNGC 5 cut(s) 20, 51, 186, 200, 668
HaeIII GGCC 3 cut(s) 53, 243, 415
HhaI GCGC 1 cut(s) 592
Hin1II CATG 6 cut(s) 128, 157, 488, 543, 781, 841
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 4 cut(s) 98, 472, 728, 781
HpaI GTTAAC 1 cut(s) 547
HphI GGTGA 3 cut(s) 176, 449, 847
Hpy166II GTNNAC 4 cut(s) 421, 547, 752, 876
Hpy188I TCNGA 2 cut(s) 562, 674
Hpy188III TCNNGA 4 cut(s) 469, 743, 768, 778
Hpy8I GTNNAC 4 cut(s) 421, 547, 752, 876
HpyAV CCTTC 2 cut(s) 161, 270
HpyCH4III ACNGT 4 cut(s) 68, 81, 629, 912
HpyCH4IV ACGT 5 cut(s) 284, 429, 736, 789, 798
HpyCH4V TGCA 3 cut(s) 153, 185, 331
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 328, 350
HpyF3I CTNAG 3 cut(s) 354, 859, 868
HpySE526I ACGT 5 cut(s) 284, 429, 736, 789, 798
Hsp92II CATG 6 cut(s) 128, 157, 488, 543, 781, 841
HspAI GCGC 1 cut(s) 590
KspAI GTTAAC 1 cut(s) 547
LmnI GCTCC 2 cut(s) 566, 675
Lsp1109I GCAGC 4 cut(s) 31, 186, 197, 654
LweI GCATC 2 cut(s) 318, 496
MaeI CTAG 5 cut(s) 74, 138, 525, 719, 768
MaeII ACGT 5 cut(s) 284, 429, 736, 789, 798
MaeIII GTNAC 2 cut(s) 437, 533
MboII GAAGA 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 13, 73
MluCI AATT 2 cut(s) 632, 763
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 697
MseI TTAA 2 cut(s) 89, 546
MslI CAYNNNNRTG 2 cut(s) 462, 910
MspA1I CMGCKG 1 cut(s) 667
MspCI CTTAAG 1 cut(s) 88
MvnI CGCG 3 cut(s) 50, 590, 756
MwoI GCNNNNNNNGC 3 cut(s) 130, 328, 350
NdeI CATATG 1 cut(s) 711
NlaIII CATG 6 cut(s) 128, 157, 488, 543, 781, 841
NlaIV GGNNCC 1 cut(s) 568
NmuCI GTSAC 1 cut(s) 437
NspI RCATGY 2 cut(s) 128, 543
PagI TCATGA 1 cut(s) 777
PcsI WCGNNNNNNNCGW 1 cut(s) 795
PfeI GAWTC 3 cut(s) 472, 728, 781
PflFI GACNNNGTC 2 cut(s) 81, 431
PkrI GCNGC 5 cut(s) 21, 52, 187, 201, 669
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 568
PspPI GGNCC 1 cut(s) 413
PsyI GACNNNGTC 2 cut(s) 81, 431
PvuII CAGCTG 1 cut(s) 667
RsaI GTAC 5 cut(s) 283, 422, 735, 788, 801
RsaNI GTAC 5 cut(s) 282, 421, 734, 787, 800
RseI CAYNNNNRTG 2 cut(s) 462, 910
SaqAI TTAA 2 cut(s) 89, 546
SatI GCNGC 5 cut(s) 20, 51, 186, 200, 668
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 1 cut(s) 107
SduI GDGCHC 2 cut(s) 13, 73
SfaNI GCATC 2 cut(s) 318, 496
SfcI CTRYAG 1 cut(s) 625
SmiMI CAYNNNNRTG 2 cut(s) 462, 910
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 2 cut(s) 632, 763
SsiI CCGC 4 cut(s) 50, 214, 375, 756
SspMI CTAG 5 cut(s) 74, 138, 525, 719, 768
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 4 cut(s) 68, 81, 629, 912
TaiI ACGT 5 cut(s) 287, 432, 739, 792, 801
TaqI TCGA 2 cut(s) 300, 706
TasI AATT 2 cut(s) 632, 763
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 3 cut(s) 472, 728, 781
Tru1I TTAA 2 cut(s) 89, 546
Tru9I TTAA 2 cut(s) 89, 546
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 4 cut(s) 19, 185, 199, 667
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 6 cut(s) 318, 741, 766, 794, 826, 838
TspGWI ACGGA 5 cut(s) 47, 244, 443, 579, 707
TspRI CASTG 1 cut(s) 73
Tth111I GACNNNGTC 2 cut(s) 81, 431
Vha464I CTTAAG 1 cut(s) 88
XapI RAATTY 2 cut(s) 632, 763
XbaI TCTAGA 1 cut(s) 767
XceI RCATGY 2 cut(s) 128, 543
XspI CTAG 5 cut(s) 74, 138, 525, 719, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.