Rh4DG058000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000124
Physical Location & Seq
Forward (+)
8928336 .. 8929604
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG058000.1

Sequence Viewer

Length: 1269 bp
ATGACGGTGATGCGCGGTCCACTCTTCGGGGGAGGTGGAAACAGTGAAGTATTGAAGAGATCCAGTCAACTGGTACCCGGAGATTTGGTGACCAAGTCCAGCATCCAGAAGTTCGTATTGAGCACCCGGGGTCTGTCCCCTGAAAAGGTGACTACCATATCTGAACTGGGGCTTGCGAGTCTTCTGGATATTGGGTGCACCACCCAGGTCGGCCCCGTGTGGAGGTTAATGGTGCACAACATTGACCTCTCAAACGACACCGTGTCCATTCACGGTCACAACTTCCCCGTCAATGCATTGGAGTTCAGCCGTATAATGGGAGTGCTTGACGGGGGTGCAGAGATCGAGCTGGGGGCTACCACAGATGCGGTAGAGTACGGTGTCTTTGTGCAGGACTTGTGCGACGGAGAAGGTCGGATACATGTCTATCTGTTGAAGGAAATTGTCATGAACCGGGCTGATGTGGACGACATGTTCCGTATTGCATTTACAATTCTTGCATTGGCTCTGGTACTGTGCCCAAGCACGGGTGATGACGTCGATCCGTCCTTGGTACTCCCGCTTCTGGAGACGGGGGAGATTGGGAAGAAAAATTGGGCTTCATTCTGTGTGAAAAGATTACTGGAAGCTGTGACTGCTCAGCGGGAGTCTGGTGACGGTGTAATTGGTGGGTGCGTTCTGTTTTTGCAGACCCTTTATTTTGATAAGGTTGGCCATTCCATGTTTCACGTTGATAGGTCTGTCCTGCCAGTCAGAGGGTGGGGTGACTTTGAGGTGAGGGAGCTTATTAGCAGGATCAGATGCCTTGGAGGCTTCAAGAGCCCAATTGTTATGATGGAAAGGAGTAAGCGTTCCAAGATGGCAACCAAGTGCGATGTGGATGACGGTGAGTTTGGGCTTGGACTGAGGAAGGGGGTTCATGAGGACATTTTTGACATCAAGCTTGACATGATGGGAGTTAAGGGTGACATCAGCAGGTTTACTGGGATTGTCGGAAGGCTGCAGCCGGACATGGCCGAGCTGACAGGGAAAGTGGACATCATATCACGGGAGTTACGTAGCTGGAAGAAAGAAGCTGCACAGATGGTGAGGCATGAGACGCGGCAAGTACTGTCCGAAAGATGGGAAACTTGCAACCTTCGCTCTGTCCCGGTGTGGACGCCGCCGAGGAATGACGTTAGGAAAAATGGGAAGTCGGTGCAGGATGCTGCAATAGAGCTGGAGGAGAACATGGGCACGCGAACAATCAATGCCAAGCAGGTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

422

Amino Acids

46.61

Weight (kDa)

5.98

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 540
Acc36I ACCTGC 2 cut(s) 966, 1249
Acc65I GGTACC 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 73
AccII CGCG 3 cut(s) 15, 1102, 1240
AciI CCGC 6 cut(s) 15, 368, 560, 643, 1102, 1163
AclWI GGATC 3 cut(s) 54, 536, 803
AcoI YGGCCR 2 cut(s) 712, 1014
AcyI GRCGYC 2 cut(s) 537, 1160
AfaI GTAC 5 cut(s) 75, 377, 513, 555, 1110
AfiI CCNNNNNNNGG 9 cut(s) 26, 145, 222, 316, 526, 527, 565, 755, 1122
AflIII ACRYGT 2 cut(s) 421, 471
AgsI TTSAA 3 cut(s) 55, 436, 817
AhdI GACNNNNNGTC 1 cut(s) 262
AjnI CCWGG 1 cut(s) 204
AloI GAACNNNNNNTCC 4 cut(s) 458, 490, 835, 867
AluBI AGCT 8 cut(s) 349, 629, 784, 943, 1021, 1062, 1076, 1219
AluI AGCT 8 cut(s) 349, 629, 784, 943, 1021, 1062, 1076, 1219
Alw21I GWGCWC 3 cut(s) 125, 200, 237
Alw26I GTCTC 2 cut(s) 563, 1091
Alw44I GTGCAC 2 cut(s) 196, 233
AlwI GGATC 3 cut(s) 54, 536, 803
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 3 cut(s) 211, 712, 1014
ApaLI GTGCAC 2 cut(s) 196, 233
ApeKI GCWGC 4 cut(s) 1000, 1003, 1076, 1208
ArsI GACNNNNNNTTYG 2 cut(s) 875, 907
Asp718I GGTACC 1 cut(s) 73
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 2 cut(s) 17, 212
AsuC2I CCSGG 5 cut(s) 78, 127, 128, 455, 1151
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 1 cut(s) 17
BaeGI GKGCMC 4 cut(s) 200, 237, 521, 1238
BalI TGGCCA 1 cut(s) 714
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 824
BarI GAAGNNNNNNTAC 4 cut(s) 402, 434, 546, 578
BbsI GAAGAC 1 cut(s) 173
Bbv12I GWGCWC 3 cut(s) 125, 200, 237
BbvI GCAGC 4 cut(s) 987, 1015, 1063, 1195
BccI CCATC 5 cut(s) 829, 853, 946, 1078, 1116
BceAI ACGGC 1 cut(s) 294
BciT130I CCWGG 1 cut(s) 206
BciVI GTATCC 1 cut(s) 411
BcnI CCSGG 5 cut(s) 78, 127, 128, 455, 1151
BcoDI GTCTC 2 cut(s) 563, 1091
BfmI CTRYAG 1 cut(s) 1001
BfuAI ACCTGC 2 cut(s) 966, 1249
BfuI GTATCC 1 cut(s) 411
BglI GCCNNNNNGGC 1 cut(s) 810
BisI GCNGC 6 cut(s) 1001, 1004, 1077, 1103, 1163, 1209
BlpI GCTNAGC 1 cut(s) 639
BlsI GCNGC 6 cut(s) 1002, 1005, 1078, 1104, 1164, 1210
BmcAI AGTACT 1 cut(s) 1110
Bme1390I CCNGG 6 cut(s) 78, 127, 128, 206, 455, 1151
Bme18I GGWCC 1 cut(s) 17
BmeRI GACNNNNNGTC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 2 cut(s) 17, 212
BmiI GGNNCC 2 cut(s) 75, 214
BmrFI CCNGG 6 cut(s) 78, 127, 128, 206, 455, 1151
BmrI ACTGGG 2 cut(s) 176, 993
BmsI GCATC 4 cut(s) 111, 355, 791, 1195
BmuI ACTGGG 2 cut(s) 176, 993
BpiI GAAGAC 1 cut(s) 173
BpmI CTGGAG 2 cut(s) 587, 1241
Bpu1102I GCTNAGC 1 cut(s) 639
BpuMI CCSGG 5 cut(s) 78, 127, 128, 455, 1151
BsaAI YACGTR 1 cut(s) 1058
BsaHI GRCGYC 2 cut(s) 537, 1160
BsaJI CCNNGG 6 cut(s) 126, 127, 204, 549, 805, 1166
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 835, 865
Bsc4I CCNNNNNNNGG 9 cut(s) 26, 145, 222, 316, 526, 527, 565, 755, 1122
Bse1I ACTGG 6 cut(s) 63, 75, 171, 627, 749, 988
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 6 cut(s) 126, 127, 204, 549, 805, 1166
BseGI GGATG 3 cut(s) 102, 886, 1210
BseLI CCNNNNNNNGG 9 cut(s) 26, 145, 222, 316, 526, 527, 565, 755, 1122
BseMII CTCAG 2 cut(s) 653, 896
BseNI ACTGG 6 cut(s) 63, 75, 171, 627, 749, 988
BseRI GAGGAG 1 cut(s) 1238
BseSI GKGCMC 4 cut(s) 200, 237, 521, 1238
BseXI GCAGC 4 cut(s) 987, 1015, 1063, 1195
BseYI CCCAGC 1 cut(s) 349
BsgI GTGCAG 4 cut(s) 357, 410, 1062, 1220
Bsh1236I CGCG 3 cut(s) 15, 1102, 1240
BshFI GGCC 3 cut(s) 213, 714, 1016
BshNI GGYRCC 1 cut(s) 73
BsiHKAI GWGCWC 3 cut(s) 125, 200, 237
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 5 cut(s) 78, 127, 454, 1007, 1151
BslFI GGGAC 2 cut(s) 121, 1133
BslI CCNNNNNNNGG 9 cut(s) 26, 145, 222, 316, 526, 527, 565, 755, 1122
BsmAI GTCTC 2 cut(s) 563, 1091
BsmBI CGTCTC 2 cut(s) 563, 1091
BsmFI GGGAC 2 cut(s) 121, 1133
BsnI GGCC 3 cut(s) 213, 714, 1016
BsoBI CYCGRG 1 cut(s) 126
Bsp1286I GDGCHC 6 cut(s) 125, 200, 237, 521, 824, 1238
Bsp143I GATC 4 cut(s) 59, 342, 541, 795
Bsp1720I GCTNAGC 1 cut(s) 639
BspACI CCGC 6 cut(s) 15, 368, 560, 643, 1102, 1163
BspANI GGCC 3 cut(s) 213, 714, 1016
BspCNI CTCAG 2 cut(s) 652, 897
BspFNI CGCG 3 cut(s) 15, 1102, 1240
BspHI TCATGA 2 cut(s) 447, 919
BspLI GGNNCC 2 cut(s) 75, 214
BspMAI CTGCAG 1 cut(s) 1005
BspMI ACCTGC 2 cut(s) 966, 1249
BspPI GGATC 3 cut(s) 54, 536, 803
BspT107I GGYRCC 1 cut(s) 73
BsrI ACTGG 6 cut(s) 63, 75, 171, 627, 749, 988
BssECI CCNNGG 6 cut(s) 126, 127, 204, 549, 805, 1166
BssMI GATC 4 cut(s) 59, 342, 541, 795
BssNI GRCGYC 2 cut(s) 537, 1160
BssT1I CCWWGG 2 cut(s) 549, 805
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 9 cut(s) 7, 44, 262, 275, 380, 516, 659, 887, 1113
Bst6I CTCTTC 2 cut(s) 29, 50
BstACI GRCGYC 2 cut(s) 537, 1160
BstBAI YACGTR 1 cut(s) 1058
BstC8I GCNNGC 2 cut(s) 174, 1238
BstDEI CTNAG 2 cut(s) 639, 905
BstEII GGTNACC 1 cut(s) 88
BstF5I GGATG 3 cut(s) 102, 886, 1210
BstFNI CGCG 3 cut(s) 15, 1102, 1240
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 4 cut(s) 62, 345, 544, 798
BstMAI GTCTC 2 cut(s) 563, 1091
BstMBI GATC 4 cut(s) 59, 342, 541, 795
BstMWI GCNNNNNNNGC 5 cut(s) 635, 810, 819, 1099, 1140
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 2 cut(s) 425, 475
BstPI GGTNACC 1 cut(s) 88
BstSCI CCNGG 6 cut(s) 76, 125, 126, 204, 453, 1149
BstSFI CTRYAG 1 cut(s) 1001
BstSLI GKGCMC 4 cut(s) 200, 237, 521, 1238
BstSNI TACGTA 1 cut(s) 1058
BstUI CGCG 3 cut(s) 15, 1102, 1240
BstV1I GCAGC 4 cut(s) 987, 1015, 1063, 1195
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 70
BstYI RGATCY 1 cut(s) 59
BsuI GTATCC 1 cut(s) 411
BsuRI GGCC 3 cut(s) 213, 714, 1016
BtgZI GCGATG 1 cut(s) 888
BtsCI GGATG 3 cut(s) 102, 886, 1210
BtsIMutI CAGTG 1 cut(s) 49
BveI ACCTGC 2 cut(s) 966, 1249
Cac8I GCNNGC 2 cut(s) 174, 1238
CciI TCATGA 2 cut(s) 447, 919
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 17, 212
Cfr9I CCCGGG 1 cut(s) 126
CseI GACGC 2 cut(s) 1108, 1168
Csp6I GTAC 5 cut(s) 74, 376, 512, 554, 1109
CviAII CATG 9 cut(s) 422, 448, 472, 721, 920, 949, 1012, 1094, 1231
CviQI GTAC 5 cut(s) 74, 376, 512, 554, 1109
DdeI CTNAG 2 cut(s) 639, 905
DpnI GATC 4 cut(s) 61, 344, 543, 797
DpnII GATC 4 cut(s) 59, 342, 541, 795
DriI GACNNNNNGTC 1 cut(s) 262
EaeI YGGCCR 2 cut(s) 712, 1014
Eam1104I CTCTTC 2 cut(s) 29, 50
Eam1105I GACNNNNNGTC 1 cut(s) 262
EarI CTCTTC 2 cut(s) 29, 50
Eco105I TACGTA 1 cut(s) 1058
Eco130I CCWWGG 2 cut(s) 549, 805
Eco24I GRGCYC 1 cut(s) 824
Eco47I GGWCC 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 126
Eco91I GGTNACC 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 549, 805
EcoT22I ATGCAT 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 824
ErhI CCWWGG 2 cut(s) 549, 805
Esp3I CGTCTC 2 cut(s) 563, 1091
FaeI CATG 9 cut(s) 425, 451, 475, 724, 923, 952, 1015, 1097, 1234
FaqI GGGAC 2 cut(s) 121, 1133
FatI CATG 9 cut(s) 421, 447, 471, 720, 919, 948, 1011, 1093, 1230
FauI CCCGC 2 cut(s) 567, 636
Fnu4HI GCNGC 6 cut(s) 1001, 1004, 1077, 1103, 1163, 1209
FokI GGATG 3 cut(s) 89, 893, 1217
FriOI GRGCYC 1 cut(s) 824
Fsp4HI GCNGC 6 cut(s) 1001, 1004, 1077, 1103, 1163, 1209
GlaI GCGC 1 cut(s) 14
GluI GCNGC 6 cut(s) 1001, 1004, 1077, 1103, 1163, 1209
GsaI CCCAGC 1 cut(s) 353
GsuI CTGGAG 2 cut(s) 587, 1241
HaeIII GGCC 3 cut(s) 213, 714, 1016
HapII CCGG 5 cut(s) 78, 127, 454, 1007, 1151
HgaI GACGC 2 cut(s) 1108, 1168
HhaI GCGC 1 cut(s) 15
Hin1I GRCGYC 2 cut(s) 537, 1160
Hin1II CATG 9 cut(s) 425, 451, 475, 724, 923, 952, 1015, 1097, 1234
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HincII GTYRAC 1 cut(s) 68
HindII GTYRAC 1 cut(s) 68
HindIII AAGCTT 1 cut(s) 941
HinfI GANTC 2 cut(s) 178, 647
HpaII CCGG 5 cut(s) 78, 127, 454, 1007, 1151
Hpy166II GTNNAC 8 cut(s) 20, 68, 198, 235, 466, 981, 1036, 1158
Hpy188I TCNGA 6 cut(s) 163, 417, 755, 800, 995, 1117
Hpy188III TCNNGA 6 cut(s) 106, 185, 448, 566, 817, 920
Hpy8I GTNNAC 8 cut(s) 20, 68, 198, 235, 466, 981, 1036, 1158
Hpy99I CGWCG 2 cut(s) 407, 542
HpyAV CCTTC 5 cut(s) 404, 430, 904, 990, 1148
HpyCH4III ACNGT 9 cut(s) 7, 44, 262, 275, 380, 516, 659, 887, 1113
HpyCH4IV ACGT 4 cut(s) 537, 729, 1057, 1176
HpyF10VI GCNNNNNNNGC 5 cut(s) 635, 810, 819, 1099, 1140
HpyF3I CTNAG 2 cut(s) 639, 905
HpySE526I ACGT 4 cut(s) 537, 729, 1057, 1176
Hsp92I GRCGYC 2 cut(s) 537, 1160
Hsp92II CATG 9 cut(s) 425, 451, 475, 724, 923, 952, 1015, 1097, 1234
HspAI GCGC 1 cut(s) 13
KpnI GGTACC 1 cut(s) 77
Kzo9I GATC 4 cut(s) 59, 342, 541, 795
LmnI GCTCC 1 cut(s) 781
Lsp1109I GCAGC 4 cut(s) 987, 1015, 1063, 1195
LweI GCATC 4 cut(s) 111, 355, 791, 1195
MaeII ACGT 4 cut(s) 537, 729, 1057, 1176
MaeIII GTNAC 8 cut(s) 88, 148, 275, 631, 653, 764, 965, 1053
MalI GATC 4 cut(s) 61, 344, 543, 797
MboI GATC 4 cut(s) 59, 342, 541, 795
MboII GAAGA 5 cut(s) 16, 67, 173, 598, 1078
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 6 cut(s) 125, 200, 237, 521, 824, 1238
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 5 cut(s) 441, 492, 592, 663, 825
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 2 cut(s) 187, 656
MmeI TCCRAC 2 cut(s) 395, 973
Mox20I TGGCCA 1 cut(s) 714
Mph1103I ATGCAT 1 cut(s) 298
MscI TGGCCA 1 cut(s) 714
MseI TTAA 2 cut(s) 227, 960
Msp20I TGGCCA 1 cut(s) 714
MspA1I CMGCKG 1 cut(s) 643
MspI CCGG 5 cut(s) 78, 127, 454, 1007, 1151
MspR9I CCNGG 6 cut(s) 78, 127, 128, 206, 455, 1151
MunI CAATTG 1 cut(s) 825
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 3 cut(s) 15, 1102, 1240
MwoI GCNNNNNNNGC 5 cut(s) 635, 810, 819, 1099, 1140
NciI CCSGG 5 cut(s) 78, 127, 128, 455, 1151
NdeII GATC 4 cut(s) 59, 342, 541, 795
NlaIII CATG 9 cut(s) 425, 451, 475, 724, 923, 952, 1015, 1097, 1234
NlaIV GGNNCC 2 cut(s) 75, 214
NmeAIII GCCGAG 2 cut(s) 1042, 1191
NmuCI GTSAC 7 cut(s) 88, 148, 275, 631, 653, 764, 965
NsiI ATGCAT 1 cut(s) 298
NspI RCATGY 2 cut(s) 425, 475
PagI TCATGA 2 cut(s) 447, 919
PciI ACATGT 2 cut(s) 421, 471
PcsI WCGNNNNNNNCGW 1 cut(s) 1054
PflFI GACNNNGTC 1 cut(s) 94
PkrI GCNGC 6 cut(s) 1002, 1005, 1078, 1104, 1164, 1210
PleI GAGTC 2 cut(s) 186, 655
PpsI GAGTC 2 cut(s) 186, 655
Ppu21I YACGTR 1 cut(s) 1058
PscI ACATGT 2 cut(s) 421, 471
Psp6I CCWGG 1 cut(s) 204
PspEI GGTNACC 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 349
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 75, 214
PspPI GGNCC 2 cut(s) 17, 212
PstI CTGCAG 1 cut(s) 1005
PsuI RGATCY 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 94
RsaI GTAC 5 cut(s) 75, 377, 513, 555, 1110
RsaNI GTAC 5 cut(s) 74, 376, 512, 554, 1109
SaqAI TTAA 2 cut(s) 227, 960
SatI GCNGC 6 cut(s) 1001, 1004, 1077, 1103, 1163, 1209
Sau3AI GATC 4 cut(s) 59, 342, 541, 795
Sau96I GGNCC 2 cut(s) 17, 212
ScaI AGTACT 1 cut(s) 1110
SchI GAGTC 2 cut(s) 187, 656
ScrFI CCNGG 6 cut(s) 78, 127, 128, 206, 455, 1151
SduI GDGCHC 6 cut(s) 125, 200, 237, 521, 824, 1238
SfaNI GCATC 4 cut(s) 111, 355, 791, 1195
SfcI CTRYAG 1 cut(s) 1001
SinI GGWCC 1 cut(s) 17
SmaI CCCGGG 1 cut(s) 128
SnaBI TACGTA 1 cut(s) 1058
Sse9I AATT 5 cut(s) 441, 492, 592, 663, 825
SsiI CCGC 6 cut(s) 15, 368, 560, 643, 1102, 1163
StyD4I CCNGG 6 cut(s) 76, 125, 126, 204, 453, 1149
StyI CCWWGG 2 cut(s) 549, 805
TaaI ACNGT 9 cut(s) 7, 44, 262, 275, 380, 516, 659, 887, 1113
TaiI ACGT 4 cut(s) 540, 732, 1060, 1179
TaqI TCGA 2 cut(s) 345, 540
TasI AATT 5 cut(s) 441, 492, 592, 663, 825
TatI WGTACW 1 cut(s) 1108
TauI GCSGC 2 cut(s) 1105, 1165
Tru1I TTAA 2 cut(s) 227, 960
Tru9I TTAA 2 cut(s) 227, 960
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 7 cut(s) 88, 148, 275, 631, 653, 764, 965
TseI GCWGC 4 cut(s) 1000, 1003, 1076, 1208
Tsp45I GTSAC 7 cut(s) 88, 148, 275, 631, 653, 764, 965
TspDTI ATGAA 3 cut(s) 464, 591, 908
TspGWI ACGGA 3 cut(s) 420, 467, 534
TspMI CCCGGG 1 cut(s) 126
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 94
VneI GTGCAC 2 cut(s) 196, 233
VpaK11BI GGWCC 1 cut(s) 17
XceI RCATGY 2 cut(s) 425, 475
XcmI CCANNNNNNNNNTGG 3 cut(s) 163, 756, 874
XmaI CCCGGG 1 cut(s) 126
ZraI GACGTC 1 cut(s) 538
ZrmI AGTACT 1 cut(s) 1110
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.