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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 21 |
| Acc36I | ACCTGC | 1 cut(s) | 541 |
| AccIII | TCCGGA | 1 cut(s) | 149 |
| AciI | CCGC | 7 cut(s) | 130, 160, 172, 225, 259, 270, 415 |
| AclWI | GGATC | 2 cut(s) | 140, 204 |
| AcsI | RAATTY | 1 cut(s) | 81 |
| AcyI | GRCGYC | 1 cut(s) | 18 |
| AfaI | GTAC | 4 cut(s) | 170, 392, 484, 886 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 129, 156, 234, 651, 785, 874 |
| AflII | CTTAAG | 1 cut(s) | 289 |
| AgeI | ACCGGT | 1 cut(s) | 201 |
| AgsI | TTSAA | 2 cut(s) | 892, 901 |
| AjnI | CCWGG | 2 cut(s) | 274, 577 |
| AluBI | AGCT | 4 cut(s) | 139, 334, 805, 922 |
| AluI | AGCT | 4 cut(s) | 139, 334, 805, 922 |
| Alw26I | GTCTC | 2 cut(s) | 290, 946 |
| AlwI | GGATC | 2 cut(s) | 140, 204 |
| Aor13HI | TCCGGA | 1 cut(s) | 149 |
| AoxI | GGCC | 4 cut(s) | 221, 442, 642, 668 |
| ApeKI | GCWGC | 6 cut(s) | 52, 139, 251, 512, 547, 805 |
| ApoI | RAATTY | 1 cut(s) | 81 |
| AsiGI | ACCGGT | 1 cut(s) | 201 |
| AspS9I | GGNCC | 4 cut(s) | 222, 272, 642, 668 |
| AsuC2I | CCSGG | 1 cut(s) | 124 |
| AsuHPI | GGTGA | 4 cut(s) | 191, 377, 566, 704 |
| AvaII | GGWCC | 1 cut(s) | 272 |
| BbsI | GAAGAC | 1 cut(s) | 418 |
| BbvI | GCAGC | 6 cut(s) | 39, 126, 238, 499, 559, 792 |
| BccI | CCATC | 6 cut(s) | 37, 236, 260, 263, 401, 659 |
| BceAI | ACGGC | 1 cut(s) | 809 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 545, 579 |
| BciT130I | CCWGG | 2 cut(s) | 276, 579 |
| BcnI | CCSGG | 1 cut(s) | 124 |
| BcoDI | GTCTC | 2 cut(s) | 290, 946 |
| BfaI | CTAG | 3 cut(s) | 339, 660, 780 |
| BfmI | CTRYAG | 1 cut(s) | 880 |
| BfrI | CTTAAG | 1 cut(s) | 289 |
| BfuAI | ACCTGC | 1 cut(s) | 541 |
| BisI | GCNGC | 6 cut(s) | 53, 140, 252, 513, 548, 806 |
| BlpI | GCTNAGC | 1 cut(s) | 609 |
| BlsI | GCNGC | 6 cut(s) | 54, 141, 253, 514, 549, 807 |
| Bme1390I | CCNGG | 3 cut(s) | 124, 276, 579 |
| Bme18I | GGWCC | 1 cut(s) | 272 |
| BmgT120I | GGNCC | 4 cut(s) | 222, 272, 642, 668 |
| BmiI | GGNNCC | 3 cut(s) | 165, 643, 823 |
| BmrFI | CCNGG | 3 cut(s) | 124, 276, 579 |
| BmsI | GCATC | 7 cut(s) | 16, 117, 183, 198, 395, 573, 751 |
| BpiI | GAAGAC | 1 cut(s) | 418 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 735, 767 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 609 |
| BpuEI | CTTGAG | 1 cut(s) | 467 |
| BpuMI | CCSGG | 1 cut(s) | 124 |
| BsaBI | GATNNNNATC | 2 cut(s) | 131, 385 |
| BsaHI | GRCGYC | 1 cut(s) | 18 |
| BsaJI | CCNNGG | 3 cut(s) | 233, 577, 578 |
| BsaWI | WCCGGW | 3 cut(s) | 149, 201, 948 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 129, 156, 234, 651, 785, 874 |
| Bse118I | RCCGGY | 2 cut(s) | 201, 644 |
| Bse3DI | GCAATG | 1 cut(s) | 268 |
| Bse8I | GATNNNNATC | 2 cut(s) | 131, 385 |
| BseAI | TCCGGA | 1 cut(s) | 149 |
| BseBI | CCWGG | 2 cut(s) | 276, 579 |
| BseDI | CCNNGG | 3 cut(s) | 233, 577, 578 |
| BseGI | GGATG | 7 cut(s) | 132, 213, 228, 255, 318, 588, 957 |
| BseJI | GATNNNNATC | 2 cut(s) | 131, 385 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 129, 156, 234, 651, 785, 874 |
| BseMI | GCAATG | 1 cut(s) | 268 |
| BseMII | CTCAG | 4 cut(s) | 51, 74, 146, 623 |
| BseXI | GCAGC | 6 cut(s) | 39, 126, 238, 499, 559, 792 |
| BshFI | GGCC | 4 cut(s) | 223, 444, 644, 670 |
| BshTI | ACCGGT | 1 cut(s) | 201 |
| BsiSI | CCGG | 6 cut(s) | 89, 123, 150, 202, 645, 949 |
| BslFI | GGGAC | 2 cut(s) | 128, 503 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 129, 156, 234, 651, 785, 874 |
| BsmAI | GTCTC | 2 cut(s) | 290, 946 |
| BsmFI | GGGAC | 2 cut(s) | 128, 503 |
| BsnI | GGCC | 4 cut(s) | 223, 444, 644, 670 |
| Bsp13I | TCCGGA | 1 cut(s) | 149 |
| Bsp143I | GATC | 2 cut(s) | 132, 196 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 609 |
| BspACI | CCGC | 7 cut(s) | 130, 160, 172, 225, 259, 270, 415 |
| BspANI | GGCC | 4 cut(s) | 223, 444, 644, 670 |
| BspCNI | CTCAG | 4 cut(s) | 50, 73, 147, 622 |
| BspEI | TCCGGA | 1 cut(s) | 149 |
| BspLI | GGNNCC | 3 cut(s) | 165, 643, 823 |
| BspMI | ACCTGC | 1 cut(s) | 541 |
| BspPI | GGATC | 2 cut(s) | 140, 204 |
| BspTI | CTTAAG | 1 cut(s) | 289 |
| BsrDI | GCAATG | 1 cut(s) | 268 |
| BsrFI | RCCGGY | 2 cut(s) | 201, 644 |
| BssAI | RCCGGY | 2 cut(s) | 201, 644 |
| BssECI | CCNNGG | 3 cut(s) | 233, 577, 578 |
| BssMI | GATC | 2 cut(s) | 132, 196 |
| BssNI | GRCGYC | 1 cut(s) | 18 |
| BssT1I | CCWWGG | 1 cut(s) | 233 |
| Bst2UI | CCWGG | 2 cut(s) | 276, 579 |
| Bst4CI | ACNGT | 3 cut(s) | 282, 543, 884 |
| BstACI | GRCGYC | 1 cut(s) | 18 |
| BstAFI | CTTAAG | 1 cut(s) | 289 |
| BstC8I | GCNNGC | 1 cut(s) | 225 |
| BstDEI | CTNAG | 4 cut(s) | 37, 60, 155, 609 |
| BstF5I | GGATG | 7 cut(s) | 132, 213, 228, 255, 318, 588, 957 |
| BstKTI | GATC | 2 cut(s) | 135, 199 |
| BstMAI | GTCTC | 2 cut(s) | 290, 946 |
| BstMBI | GATC | 2 cut(s) | 132, 196 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 136, 267, 331, 351 |
| BstNI | CCWGG | 2 cut(s) | 276, 579 |
| BstNSI | RCATGY | 3 cut(s) | 329, 566, 798 |
| BstSCI | CCNGG | 3 cut(s) | 122, 274, 577 |
| BstSFI | CTRYAG | 1 cut(s) | 880 |
| BstV1I | GCAGC | 6 cut(s) | 39, 126, 238, 499, 559, 792 |
| BstV2I | GAAGAC | 1 cut(s) | 418 |
| BsuRI | GGCC | 4 cut(s) | 223, 444, 644, 670 |
| BtgZI | GCGATG | 1 cut(s) | 645 |
| BtsCI | GGATG | 7 cut(s) | 132, 213, 228, 255, 318, 588, 957 |
| BtsIMutI | CAGTG | 1 cut(s) | 45 |
| BveI | ACCTGC | 1 cut(s) | 541 |
| Cac8I | GCNNGC | 1 cut(s) | 225 |
| Cfr10I | RCCGGY | 2 cut(s) | 201, 644 |
| Cfr13I | GGNCC | 4 cut(s) | 222, 272, 642, 668 |
| Csp6I | GTAC | 4 cut(s) | 169, 391, 483, 885 |
| CspAI | ACCGGT | 1 cut(s) | 201 |
| CviAII | CATG | 6 cut(s) | 109, 326, 355, 563, 740, 795 |
| CviQI | GTAC | 4 cut(s) | 169, 391, 483, 885 |
| DdeI | CTNAG | 4 cut(s) | 37, 60, 155, 609 |
| DpnI | GATC | 2 cut(s) | 134, 198 |
| DpnII | GATC | 2 cut(s) | 132, 196 |
| Eco130I | CCWWGG | 1 cut(s) | 233 |
| Eco47I | GGWCC | 1 cut(s) | 272 |
| EcoRII | CCWGG | 2 cut(s) | 274, 577 |
| EcoT14I | CCWWGG | 1 cut(s) | 233 |
| ErhI | CCWWGG | 1 cut(s) | 233 |
| FaeI | CATG | 6 cut(s) | 112, 329, 358, 566, 743, 798 |
| FaqI | GGGAC | 2 cut(s) | 128, 503 |
| FatI | CATG | 6 cut(s) | 108, 325, 354, 562, 739, 794 |
| FauI | CCCGC | 2 cut(s) | 153, 232 |
| Fnu4HI | GCNGC | 6 cut(s) | 53, 140, 252, 513, 548, 806 |
| FokI | GGATG | 7 cut(s) | 139, 215, 220, 242, 325, 595, 964 |
| Fsp4HI | GCNGC | 6 cut(s) | 53, 140, 252, 513, 548, 806 |
| FspBI | CTAG | 3 cut(s) | 339, 660, 780 |
| GluI | GCNGC | 6 cut(s) | 53, 140, 252, 513, 548, 806 |
| HaeIII | GGCC | 4 cut(s) | 223, 444, 644, 670 |
| HapII | CCGG | 6 cut(s) | 89, 123, 150, 202, 645, 949 |
| Hin1I | GRCGYC | 1 cut(s) | 18 |
| Hin1II | CATG | 6 cut(s) | 112, 329, 358, 566, 743, 798 |
| HincII | GTYRAC | 1 cut(s) | 22 |
| HindII | GTYRAC | 1 cut(s) | 22 |
| HinfI | GANTC | 4 cut(s) | 58, 299, 727, 930 |
| HpaII | CCGG | 6 cut(s) | 89, 123, 150, 202, 645, 949 |
| HphI | GGTGA | 4 cut(s) | 191, 377, 566, 704 |
| Hpy166II | GTNNAC | 4 cut(s) | 22, 70, 574, 676 |
| Hpy188I | TCNGA | 3 cut(s) | 63, 817, 929 |
| Hpy188III | TCNNGA | 2 cut(s) | 150, 724 |
| Hpy8I | GTNNAC | 4 cut(s) | 22, 70, 574, 676 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 968 |
| HpyAV | CCTTC | 2 cut(s) | 362, 898 |
| HpyCH4III | ACNGT | 3 cut(s) | 282, 543, 884 |
| HpyCH4IV | ACGT | 6 cut(s) | 18, 66, 485, 684, 736, 966 |
| HpyCH4V | TGCA | 7 cut(s) | 211, 354, 386, 547, 566, 586, 808 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 136, 267, 331, 351 |
| HpyF3I | CTNAG | 4 cut(s) | 37, 60, 155, 609 |
| HpySE526I | ACGT | 6 cut(s) | 18, 66, 485, 684, 736, 966 |
| Hsp92I | GRCGYC | 1 cut(s) | 18 |
| Hsp92II | CATG | 6 cut(s) | 112, 329, 358, 566, 743, 798 |
| Kpn2I | TCCGGA | 1 cut(s) | 149 |
| Kzo9I | GATC | 2 cut(s) | 132, 196 |
| LmnI | GCTCC | 3 cut(s) | 4, 743, 821 |
| Lsp1109I | GCAGC | 6 cut(s) | 39, 126, 238, 499, 559, 792 |
| LweI | GCATC | 7 cut(s) | 16, 117, 183, 198, 395, 573, 751 |
| MaeI | CTAG | 3 cut(s) | 339, 660, 780 |
| MaeII | ACGT | 6 cut(s) | 18, 66, 485, 684, 736, 966 |
| MaeIII | GTNAC | 2 cut(s) | 692, 788 |
| MalI | GATC | 2 cut(s) | 134, 198 |
| MboI | GATC | 2 cut(s) | 132, 196 |
| MboII | GAAGA | 1 cut(s) | 418 |
| MluCI | AATT | 2 cut(s) | 81, 506 |
| MlyI | GAGTC | 3 cut(s) | 52, 308, 924 |
| MmeI | TCCRAC | 1 cut(s) | 952 |
| MroI | TCCGGA | 1 cut(s) | 149 |
| MseI | TTAA | 2 cut(s) | 290, 801 |
| MslI | CAYNNNNRTG | 1 cut(s) | 717 |
| MspCI | CTTAAG | 1 cut(s) | 289 |
| MspI | CCGG | 6 cut(s) | 89, 123, 150, 202, 645, 949 |
| MspR9I | CCNGG | 3 cut(s) | 124, 276, 579 |
| MvaI | CCWGG | 2 cut(s) | 276, 579 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 136, 267, 331, 351 |
| NciI | CCSGG | 1 cut(s) | 124 |
| NdeII | GATC | 2 cut(s) | 132, 196 |
| NlaIII | CATG | 6 cut(s) | 112, 329, 358, 566, 743, 798 |
| NlaIV | GGNNCC | 3 cut(s) | 165, 643, 823 |
| NmuCI | GTSAC | 1 cut(s) | 692 |
| NspI | RCATGY | 3 cut(s) | 329, 566, 798 |
| PasI | CCCWGGG | 1 cut(s) | 578 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 963 |
| PfeI | GAWTC | 1 cut(s) | 727 |
| PflFI | GACNNNGTC | 2 cut(s) | 282, 686 |
| PfoI | TCCNGGA | 1 cut(s) | 274 |
| PinAI | ACCGGT | 1 cut(s) | 201 |
| PkrI | GCNGC | 6 cut(s) | 54, 141, 253, 514, 549, 807 |
| PleI | GAGTC | 3 cut(s) | 52, 307, 924 |
| PpsI | GAGTC | 3 cut(s) | 52, 307, 924 |
| Psp6I | CCWGG | 2 cut(s) | 274, 577 |
| PspGI | CCWGG | 2 cut(s) | 274, 577 |
| PspN4I | GGNNCC | 3 cut(s) | 165, 643, 823 |
| PspPI | GGNCC | 4 cut(s) | 222, 272, 642, 668 |
| PsyI | GACNNNGTC | 2 cut(s) | 282, 686 |
| RsaI | GTAC | 4 cut(s) | 170, 392, 484, 886 |
| RsaNI | GTAC | 4 cut(s) | 169, 391, 483, 885 |
| RseI | CAYNNNNRTG | 1 cut(s) | 717 |
| SaqAI | TTAA | 2 cut(s) | 290, 801 |
| SatI | GCNGC | 6 cut(s) | 53, 140, 252, 513, 548, 806 |
| Sau3AI | GATC | 2 cut(s) | 132, 196 |
| Sau96I | GGNCC | 4 cut(s) | 222, 272, 642, 668 |
| SchI | GAGTC | 3 cut(s) | 52, 308, 924 |
| ScrFI | CCNGG | 3 cut(s) | 124, 276, 579 |
| SfaNI | GCATC | 7 cut(s) | 16, 117, 183, 198, 395, 573, 751 |
| SfcI | CTRYAG | 1 cut(s) | 880 |
| SgrAI | CRCCGGYG | 1 cut(s) | 201 |
| SinI | GGWCC | 1 cut(s) | 272 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 717 |
| SmlI | CTYRAG | 2 cut(s) | 289, 446 |
| SmoI | CTYRAG | 2 cut(s) | 289, 446 |
| Sse9I | AATT | 2 cut(s) | 81, 506 |
| SsiI | CCGC | 7 cut(s) | 130, 160, 172, 225, 259, 270, 415 |
| SspMI | CTAG | 3 cut(s) | 339, 660, 780 |
| StyD4I | CCNGG | 3 cut(s) | 122, 274, 577 |
| StyI | CCWWGG | 1 cut(s) | 233 |
| TaaI | ACNGT | 3 cut(s) | 282, 543, 884 |
| TaiI | ACGT | 6 cut(s) | 21, 69, 488, 687, 739, 969 |
| TaqI | TCGA | 4 cut(s) | 15, 135, 555, 963 |
| TasI | AATT | 2 cut(s) | 81, 506 |
| TfiI | GAWTC | 1 cut(s) | 727 |
| Tru1I | TTAA | 2 cut(s) | 290, 801 |
| Tru9I | TTAA | 2 cut(s) | 290, 801 |
| TscAI | CASTG | 1 cut(s) | 45 |
| TseFI | GTSAC | 1 cut(s) | 692 |
| TseI | GCWGC | 6 cut(s) | 52, 139, 251, 512, 547, 805 |
| Tsp45I | GTSAC | 1 cut(s) | 692 |
| TspDTI | ATGAA | 2 cut(s) | 509, 573 |
| TspGWI | ACGGA | 5 cut(s) | 156, 228, 445, 698, 834 |
| TspRI | CASTG | 1 cut(s) | 45 |
| Tth111I | GACNNNGTC | 2 cut(s) | 282, 686 |
| Vha464I | CTTAAG | 1 cut(s) | 289 |
| VpaK11BI | GGWCC | 1 cut(s) | 272 |
| XapI | RAATTY | 1 cut(s) | 81 |
| XceI | RCATGY | 3 cut(s) | 329, 566, 798 |
| XspI | CTAG | 3 cut(s) | 339, 660, 780 |
| ZraI | GACGTC | 1 cut(s) | 19 |