Rh7CG370800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000124
Physical Location & Seq
Forward (+)
46590889 .. 46591419
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG370800.1

Sequence Viewer

Length: 399 bp
ATGATGTTGTTGGTTTTCCGATACCGCGGTGATGGCCTGTTCACAATACGCCGGCTCCGATCAGATGGGACTATGATGTACAGAAACCCAAAACCCCCCCTAGGCTACCTAATAGATCAGACCACCGACCTTGAAGTGCCCTTCCACGCCTTCGTATCCAACGTCTGGGACTACCATGTCACTGTGCCCGCCATCCCAAGGGGTCGCCTATACGCTGCCATCCACAATGATGGCGGTCCAGGACCCAGTCTCTTAAGGTGGGATTCAAGGAATGGGTTGATATTCTGGCATGTTAAGATGACTAGAGGTGTAGGTTGCATGACTTTTGGTGAAGGGTGGAACAGATTTGCCGCCCACAACCGGCTGCTTGATGGAAAGCGGTTTTGTGTCTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.23

Weight (kDa)

10.01

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AccB7I CCANNNNNTGG 1 cut(s) 165
AccII CGCG 1 cut(s) 27
AciI CCGC 6 cut(s) 25, 27, 189, 234, 351, 379
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 4 cut(s) 101, 165, 198, 360
AflII CTTAAG 1 cut(s) 253
AgsI TTSAA 2 cut(s) 134, 267
AjnI CCWGG 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 254
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 2 cut(s) 215, 364
AspA2I CCTAGG 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 236, 242
AsuHPI GGTGA 2 cut(s) 41, 341
AvaII GGWCC 2 cut(s) 236, 242
AvrII CCTAGG 1 cut(s) 100
BaeGI GKGCMC 2 cut(s) 141, 189
BaeI ACNNNNGTAYC 2 cut(s) 13, 46
BbsI GAAGAC 1 cut(s) 382
BbvI GCAGC 2 cut(s) 202, 351
BccI CCATC 6 cut(s) 26, 59, 200, 224, 227, 365
BciT130I CCWGG 1 cut(s) 240
BciVI GTATCC 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 2 cut(s) 101, 303
BfrI CTTAAG 1 cut(s) 253
BfuI GTATCC 1 cut(s) 166
BisI GCNGC 3 cut(s) 216, 351, 365
BlnI CCTAGG 1 cut(s) 100
BlsI GCNGC 3 cut(s) 217, 352, 366
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 2 cut(s) 236, 242
BmgT120I GGNCC 2 cut(s) 236, 242
BmiI GGNNCC 2 cut(s) 56, 244
BmrFI CCNGG 1 cut(s) 240
BmrI ACTGGG 1 cut(s) 240
BmuI ACTGGG 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 382
BsaJI CCNNGG 3 cut(s) 25, 100, 197
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 165, 198, 360
Bse118I RCCGGY 2 cut(s) 51, 360
Bse1I ACTGG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 3 cut(s) 25, 100, 197
BseGI GGATG 2 cut(s) 192, 219
BseLI CCNNNNNNNGG 4 cut(s) 101, 165, 198, 360
BseNI ACTGG 1 cut(s) 246
BseSI GKGCMC 2 cut(s) 141, 189
BseXI GCAGC 2 cut(s) 202, 351
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 36
BsiSI CCGG 2 cut(s) 52, 361
BslFI GGGAC 2 cut(s) 82, 182
BslI CCNNNNNNNGG 4 cut(s) 101, 165, 198, 360
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 2 cut(s) 82, 182
BsnI GGCC 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 141, 189
Bsp1407I TGTACA 1 cut(s) 78
Bsp143I GATC 2 cut(s) 59, 115
BspACI CCGC 6 cut(s) 25, 27, 189, 234, 351, 379
BspANI GGCC 1 cut(s) 36
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 2 cut(s) 56, 244
BspTI CTTAAG 1 cut(s) 253
BsrFI RCCGGY 2 cut(s) 51, 360
BsrGI TGTACA 1 cut(s) 78
BsrI ACTGG 1 cut(s) 246
BssAI RCCGGY 2 cut(s) 51, 360
BssECI CCNNGG 3 cut(s) 25, 100, 197
BssMI GATC 2 cut(s) 59, 115
BssT1I CCWWGG 2 cut(s) 100, 197
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 184
BstAFI CTTAAG 1 cut(s) 253
BstAUI TGTACA 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 53, 189
BstDSI CCRYGG 1 cut(s) 25
BstF5I GGATG 2 cut(s) 192, 219
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 2 cut(s) 62, 118
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 2 cut(s) 59, 115
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNI CCWGG 1 cut(s) 240
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 238
BstSLI GKGCMC 2 cut(s) 141, 189
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 202, 351
BstV2I GAAGAC 1 cut(s) 382
BstXI CCANNNNNNTGG 1 cut(s) 230
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 2 cut(s) 192, 219
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 53, 189
Cfr10I RCCGGY 2 cut(s) 51, 360
Cfr13I GGNCC 2 cut(s) 236, 242
Cfr42I CCGCGG 1 cut(s) 28
Csp6I GTAC 1 cut(s) 79
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 3 cut(s) 176, 290, 319
CviJI RGCY 4 cut(s) 36, 55, 105, 364
CviKI_1 RGCY 4 cut(s) 36, 55, 105, 364
CviQI GTAC 1 cut(s) 79
DpnI GATC 2 cut(s) 61, 117
DpnII GATC 2 cut(s) 59, 115
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 100, 197
Eco47I GGWCC 2 cut(s) 236, 242
EcoO109I RGGNCCY 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 100, 197
ErhI CCWWGG 2 cut(s) 100, 197
FaeI CATG 3 cut(s) 179, 293, 322
FaiI YATR 5 cut(s) 74, 177, 211, 291, 320
FaqI GGGAC 2 cut(s) 82, 182
FatI CATG 3 cut(s) 175, 289, 318
FauI CCCGC 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 216, 351, 365
FokI GGATG 2 cut(s) 179, 206
Fsp4HI GCNGC 3 cut(s) 216, 351, 365
FspBI CTAG 2 cut(s) 101, 303
GluI GCNGC 3 cut(s) 216, 351, 365
HaeIII GGCC 1 cut(s) 36
HapII CCGG 2 cut(s) 52, 361
Hin1II CATG 3 cut(s) 179, 293, 322
HinfI GANTC 1 cut(s) 263
HpaII CCGG 2 cut(s) 52, 361
HphI GGTGA 2 cut(s) 41, 341
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 4 cut(s) 20, 59, 64, 120
Hpy8I GTNNAC 1 cut(s) 42
HpyAV CCTTC 3 cut(s) 151, 160, 326
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 3 cut(s) 179, 293, 322
KroI GCCGGC 1 cut(s) 51
KroNI GCCGGC 1 cut(s) 53
KspI CCGCGG 1 cut(s) 28
Kzo9I GATC 2 cut(s) 59, 115
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 8 cut(s) 50, 65, 151, 225, 252, 259, 271, 374
Lsp1109I GCAGC 2 cut(s) 202, 351
MaeI CTAG 2 cut(s) 101, 303
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 178
MalI GATC 2 cut(s) 61, 117
MboI GATC 2 cut(s) 59, 115
MboII GAAGA 1 cut(s) 382
MhlI GDGCHC 2 cut(s) 141, 189
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 1 cut(s) 299
MroNI GCCGGC 1 cut(s) 51
MseI TTAA 3 cut(s) 254, 294, 397
MslI CAYNNNNRTG 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 27
MspCI CTTAAG 1 cut(s) 253
MspI CCGG 2 cut(s) 52, 361
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 33
NaeI GCCGGC 1 cut(s) 53
NdeII GATC 2 cut(s) 59, 115
NgoMIV GCCGGC 1 cut(s) 51
NlaIII CATG 3 cut(s) 179, 293, 322
NlaIV GGNNCC 2 cut(s) 56, 244
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 293
PcsI WCGNNNNNNNCGW 2 cut(s) 55, 159
PdiI GCCGGC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 263
PflFI GACNNNGTC 1 cut(s) 246
PflMI CCANNNNNTGG 1 cut(s) 165
PfoI TCCNGGA 1 cut(s) 238
PkrI GCNGC 3 cut(s) 217, 352, 366
PpuMI RGGWCCY 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 56, 244
PspPI GGNCC 2 cut(s) 236, 242
PspPPI RGGWCCY 1 cut(s) 242
PsyI GACNNNGTC 1 cut(s) 246
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 228
SacII CCGCGG 1 cut(s) 28
SaqAI TTAA 3 cut(s) 254, 294, 397
SatI GCNGC 3 cut(s) 216, 351, 365
Sau3AI GATC 2 cut(s) 59, 115
Sau96I GGNCC 2 cut(s) 236, 242
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 2 cut(s) 141, 189
SetI ASST 6 cut(s) 111, 132, 165, 260, 310, 316
Sfr303I CCGCGG 1 cut(s) 28
SgrBI CCGCGG 1 cut(s) 28
SinI GGWCC 2 cut(s) 236, 242
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SsiI CCGC 6 cut(s) 25, 27, 189, 234, 351, 379
SspMI CTAG 2 cut(s) 101, 303
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 2 cut(s) 100, 197
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 165
TatI WGTACW 1 cut(s) 78
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 3 cut(s) 254, 294, 397
Tru9I TTAA 3 cut(s) 254, 294, 397
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 2 cut(s) 215, 364
Tsp45I GTSAC 1 cut(s) 178
TspRI CASTG 1 cut(s) 187
Tth111I GACNNNGTC 1 cut(s) 246
Van91I CCANNNNNTGG 1 cut(s) 165
Vha464I CTTAAG 1 cut(s) 253
VpaK11BI GGWCC 2 cut(s) 236, 242
XceI RCATGY 1 cut(s) 293
XmaJI CCTAGG 1 cut(s) 100
XspI CTAG 2 cut(s) 101, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.