Rmu_sc0003179.1_g000020

DEAD-box ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003179.1
OG0000124
Physical Location & Seq
Reverse (-)
89831 .. 94943
5113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003179.1_g000020.1.cds

Sequence Viewer

Length: 606 bp
atgtgtatactaaaccctccacctcctcagctacgacggcgcttaaatgggttcgaagagaaggatctgacatggatcaatgtgttaagggaacaggatgacaagaaggcccctgactctgctgctaaagtcaaaggcgaatcagccaagaagggatatgttggaattcacatctcaggattcagagatatccttttaaggccggagcttgtacgcccgattgtggactcaatatttgagcatccttttgaaggtatactattgaattcaatcttccccggcgacggtatggccccgagattgccgagtcagtcaaacaggctccaaacaaggacagcaactgcagtgtcagaaaatgccatagttctgagttttaaattgaggtatctgccggccaagtttgctcaggccacatttcccagaggagcagctaagataaaggtccagaaatcagatagacgtgtctggaggatgaaagccctcccatccaataccactcactacctaagtgctgggtactccaaattcagggaggctctgaaactgcccataggatccacaatcgagctccatgtggttgactggaacagactagtgttcgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 ko05164 map03013 map03015 map03040 map05164
Pfam Domains
Protein Families
DEAD Helicase_C

Protein Analysis

201

Amino Acids

22.75

Weight (kDa)

10.04

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 7, 256
AclWI GGATC 4 cut(s) 72, 83, 549, 562
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 3 cut(s) 165, 265, 524
AfaI GTAC 2 cut(s) 213, 518
AfiI CCNNNNNNNGG 4 cut(s) 223, 251, 284, 528
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 3 cut(s) 251, 265, 270
AhlI ACTAGT 1 cut(s) 592
AjiI CACGTC 1 cut(s) 461
AluBI AGCT 4 cut(s) 31, 208, 431, 568
AluI AGCT 4 cut(s) 31, 208, 431, 568
Alw21I GWGCWC 1 cut(s) 570
AlwI GGATC 4 cut(s) 72, 83, 549, 562
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 295
AoxI GGCC 5 cut(s) 108, 200, 291, 393, 408
ApeKI GCWGC 2 cut(s) 122, 428
ApoI RAATTY 3 cut(s) 165, 265, 524
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 3 cut(s) 109, 292, 442
AsuC2I CCSGG 1 cut(s) 279
AsuII TTCGAA 1 cut(s) 54
AvaI CYCGRG 1 cut(s) 295
AvaII GGWCC 1 cut(s) 442
BamHI GGATCC 1 cut(s) 554
BanII GRGCYC 1 cut(s) 570
Bbv12I GWGCWC 1 cut(s) 570
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 109, 440
BccI CCATC 1 cut(s) 493
BceAI ACGGC 1 cut(s) 53
BcnI CCSGG 1 cut(s) 279
BcuI ACTAGT 1 cut(s) 592
BfaI CTAG 1 cut(s) 593
BfmI CTRYAG 1 cut(s) 342
BfoI RGCGCY 1 cut(s) 43
BisI GCNGC 2 cut(s) 123, 429
BlsI GCNGC 2 cut(s) 124, 430
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 442
BmeT110I CYCGRG 1 cut(s) 295
BmgBI CACGTC 1 cut(s) 461
BmgT120I GGNCC 3 cut(s) 109, 292, 442
BmiI GGNNCC 4 cut(s) 111, 294, 323, 556
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 487
Bpu10I CCTNAGC 2 cut(s) 27, 405
Bpu14I TTCGAA 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 277
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 251, 284, 528
Bse118I RCCGGY 1 cut(s) 391
Bse1I ACTGG 1 cut(s) 587
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 4 cut(s) 103, 241, 477, 485
BseLI CCNNNNNNNGG 4 cut(s) 223, 251, 284, 528
BseMII CTCAG 4 cut(s) 41, 189, 359, 419
BseNI ACTGG 1 cut(s) 587
BseRI GAGGAG 2 cut(s) 15, 438
BseXI GCAGC 2 cut(s) 109, 440
BseYI CCCAGC 1 cut(s) 512
BshFI GGCC 5 cut(s) 110, 202, 293, 395, 410
BsiHKAI GWGCWC 1 cut(s) 570
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 3 cut(s) 203, 279, 392
BslI CCNNNNNNNGG 4 cut(s) 223, 251, 284, 528
BsnI GGCC 5 cut(s) 110, 202, 293, 395, 410
BsoBI CYCGRG 1 cut(s) 295
Bsp119I TTCGAA 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 3 cut(s) 64, 75, 554
BspANI GGCC 5 cut(s) 110, 202, 293, 395, 410
BspCNI CTCAG 4 cut(s) 40, 188, 360, 418
BspLI GGNNCC 4 cut(s) 111, 294, 323, 556
BspMAI CTGCAG 1 cut(s) 346
BspPI GGATC 4 cut(s) 72, 83, 549, 562
BspT104I TTCGAA 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 391
BsrI ACTGG 1 cut(s) 587
BssAI RCCGGY 1 cut(s) 391
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 3 cut(s) 64, 75, 554
BssNAI GTATAC 2 cut(s) 8, 257
Bst1107I GTATAC 2 cut(s) 8, 257
Bst4CI ACNGT 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 6 cut(s) 27, 175, 368, 405, 432, 506
BstENI CCTNNNNNAGG 1 cut(s) 249
BstF5I GGATG 4 cut(s) 103, 241, 477, 485
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 3 cut(s) 67, 78, 557
BstMBI GATC 3 cut(s) 64, 75, 554
BstMWI GCNNNNNNNGC 2 cut(s) 37, 401
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 109, 440
BstX2I RGATCY 2 cut(s) 64, 554
BstYI RGATCY 2 cut(s) 64, 554
BstZ17I GTATAC 2 cut(s) 8, 257
BsuRI GGCC 5 cut(s) 110, 202, 293, 395, 410
BtrI CACGTC 1 cut(s) 461
BtsCI GGATG 4 cut(s) 103, 241, 477, 485
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 393
CaiI CAGNNNCTG 1 cut(s) 341
CfoI GCGC 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 391
Cfr13I GGNCC 3 cut(s) 109, 292, 442
Csp6I GTAC 2 cut(s) 212, 517
CviAII CATG 2 cut(s) 72, 572
CviQI GTAC 2 cut(s) 212, 517
DdeI CTNAG 6 cut(s) 27, 175, 368, 405, 432, 506
DpnI GATC 3 cut(s) 66, 77, 556
DpnII GATC 3 cut(s) 64, 75, 554
DraI TTTAAA 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 570
Eco32I GATATC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 442
Eco53kI GAGCTC 1 cut(s) 568
Eco88I CYCGRG 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 568
EcoNI CCTNNNNNAGG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 109
EcoRI GAATTC 2 cut(s) 165, 265
EcoRV GATATC 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 570
FaeI CATG 2 cut(s) 75, 575
FaiI YATR 8 cut(s) 8, 73, 159, 257, 290, 362, 551, 573
FatI CATG 2 cut(s) 71, 571
FblI GTMKAC 2 cut(s) 7, 256
Fnu4HI GCNGC 2 cut(s) 123, 429
FokI GGATG 4 cut(s) 110, 228, 472, 484
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 2 cut(s) 123, 429
FspBI CTAG 1 cut(s) 593
GlaI GCGC 1 cut(s) 41
GluI GCNGC 2 cut(s) 123, 429
GsaI CCCAGC 1 cut(s) 516
GsuI CTGGAG 1 cut(s) 487
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 5 cut(s) 110, 202, 293, 395, 410
HapII CCGG 3 cut(s) 203, 279, 392
HhaI GCGC 1 cut(s) 42
Hin1II CATG 2 cut(s) 75, 575
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 5 cut(s) 116, 140, 180, 227, 307
HpaII CCGG 3 cut(s) 203, 279, 392
Hpy166II GTNNAC 4 cut(s) 8, 226, 257, 580
Hpy188I TCNGA 6 cut(s) 69, 185, 352, 369, 454, 540
Hpy188III TCNNGA 3 cut(s) 177, 445, 466
Hpy8I GTNNAC 4 cut(s) 8, 226, 257, 580
Hpy99I CGWCG 2 cut(s) 39, 287
HpyAV CCTTC 4 cut(s) 55, 100, 145, 245
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 401
HpyF3I CTNAG 6 cut(s) 27, 175, 368, 405, 432, 506
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 2 cut(s) 75, 575
HspAI GCGC 1 cut(s) 40
KroI GCCGGC 1 cut(s) 391
KroNI GCCGGC 1 cut(s) 393
Kzo9I GATC 3 cut(s) 64, 75, 554
LmnI GCTCC 4 cut(s) 205, 327, 425, 573
Lsp1109I GCAGC 2 cut(s) 109, 440
LweI GCATC 1 cut(s) 250
MaeI CTAG 1 cut(s) 593
MaeII ACGT 1 cut(s) 460
MalI GATC 3 cut(s) 66, 77, 556
MboI GATC 3 cut(s) 64, 75, 554
MboII GAAGA 2 cut(s) 68, 265
MflI RGATCY 2 cut(s) 64, 554
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 4 cut(s) 165, 265, 377, 524
MlyI GAGTC 3 cut(s) 110, 221, 316
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 8 cut(s) 27, 33, 36, 375, 416, 462, 491, 526
MroNI GCCGGC 1 cut(s) 391
MseI TTAA 4 cut(s) 44, 86, 197, 375
MspI CCGG 3 cut(s) 203, 279, 392
MspR9I CCNGG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 37, 401
NaeI GCCGGC 1 cut(s) 393
NciI CCSGG 1 cut(s) 279
NdeII GATC 3 cut(s) 64, 75, 554
NgoMIV GCCGGC 1 cut(s) 391
NlaIII CATG 2 cut(s) 75, 575
NlaIV GGNNCC 4 cut(s) 111, 294, 323, 556
NmeAIII GCCGAG 1 cut(s) 330
NspV TTCGAA 1 cut(s) 54
PdiI GCCGGC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 140, 180
PkrI GCNGC 2 cut(s) 124, 430
PleI GAGTC 3 cut(s) 110, 221, 315
PpsI GAGTC 3 cut(s) 110, 221, 315
Psp124BI GAGCTC 1 cut(s) 570
PspFI CCCAGC 1 cut(s) 512
PspN4I GGNNCC 4 cut(s) 111, 294, 323, 556
PspPI GGNCC 3 cut(s) 109, 292, 442
PstI CTGCAG 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 2 cut(s) 64, 554
RsaI GTAC 2 cut(s) 213, 518
RsaNI GTAC 2 cut(s) 212, 517
SacI GAGCTC 1 cut(s) 570
SaqAI TTAA 4 cut(s) 44, 86, 197, 375
SatI GCNGC 2 cut(s) 123, 429
Sau3AI GATC 3 cut(s) 64, 75, 554
Sau96I GGNCC 3 cut(s) 109, 292, 442
SchI GAGTC 3 cut(s) 110, 221, 316
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 1 cut(s) 570
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 342
SfuI TTCGAA 1 cut(s) 54
SinI GGWCC 1 cut(s) 442
SpeI ACTAGT 1 cut(s) 592
Sse9I AATT 4 cut(s) 165, 265, 377, 524
SspI AATATT 1 cut(s) 234
SspMI CTAG 1 cut(s) 593
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 287
TaiI ACGT 1 cut(s) 463
TaqI TCGA 3 cut(s) 54, 564, 600
TasI AATT 4 cut(s) 165, 265, 377, 524
TfiI GAWTC 2 cut(s) 140, 180
Tru1I TTAA 4 cut(s) 44, 86, 197, 375
Tru9I TTAA 4 cut(s) 44, 86, 197, 375
TscAI CASTG 1 cut(s) 351
TseI GCWGC 2 cut(s) 122, 428
TspDTI ATGAA 1 cut(s) 488
TspRI CASTG 1 cut(s) 351
VpaK11BI GGWCC 1 cut(s) 442
XagI CCTNNNNNAGG 1 cut(s) 249
XapI RAATTY 3 cut(s) 165, 265, 524
XmiI GTMKAC 2 cut(s) 7, 256
XspI CTAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.