Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002045.1

Orthogroup ID

OG0000124

Physical Location & Seq

Genomic Coordinates Reverse (-)

85359 .. 87280

Gene Structure 1922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002045.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atgtcagaccgatttcagaatctgaaaacatatgccatcaaacgagcggcaacagtcgcaacccccagcttcaatatcaatttggagtccaattcggttcatctacaatacaagtccggcaaggccgatttcagtacgatgtttgacccatgcttcattgttgttgttcggtacccgggacagaacgtcgaaaagacgaaaattccacccctgttcagtaggcagcacttggacgacgatgacactgaatccgctcgtctggtcttggatggatcacggaagtgctcatactacgtcgaaattatgcgacaagggcgggagcattggctgggttctggttgggagagttttttggacaaagtccgaggcggtcagggtcgaatggtgctgctactccagtacagacgcggcatgaagttcattgtgcgcaggtacgatgtgaacggggctttgatgtacgcttctcccagaccccgatttggttgcccacctcccaaatcaccgactatttcaggggtagcagacggcttcgtttcggacgtttgggatgcctctgtcactgtgcctgttgtaccaagaggtgtcatgcatgatagactgattgcggatggggcccctgctcggtgtgaactccaatgggagacggtgcctccatgcctccagcaggtcgacattacaggaggacgtaggaagctgcggttcgcttcagcgtgggaacgatttcacttcgacaatcggttggacaaacgtcggtgctgtgtgttcacctacctggcaaatctacgtttctccgttcttgtgttcgacactgttcgaggtaacctgtgcacgacgccgctgcaatacacccaagctccagctgtggccccacattttaggggaaatgagcacatgcagggtaatgaggagcctgaggaggagcatatggatgtggatggggcacagggggaagaagacgaggaacggatcccggatcaggatgtggaagatgaagatgaggaacctcataaggaaccggttaacccaggatggcgtactttcaggtcggacagatgcacaattcaaagaggtcactgttatctgccggccaagtttgctcaggccacatttcccagaggagcatatgtgaagataaaggtccagaaatcagatggacgtgtctggaggatgaaagccgtcccatccaataccacacactacctaagtgctgggtactccaacttcagggaggctctgcaactgcccataggatccacaatcgaactccatgcggttgaccggaacagactagtgttcgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

433

Amino Acids

49.46

Weight (kDa)

8.0

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis	RchiOBHm_Chr2g0155611
rosa_laevigata	RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora	Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii	Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa	Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha	Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana	Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	428
Acc36I	ACCTGC	2 cut(s)	420, 655
Acc65I	GGTACC	1 cut(s)	171
AccB1I	GGYRCC	2 cut(s)	171, 646
AccBSI	CCGCTC	2 cut(s)	47, 254
AccI	GTMKAC	1 cut(s)	669
AccII	CGCG	1 cut(s)	408
AciI	CCGC	9 cut(s)	47, 252, 316, 369, 408, 605, 697, 836, 1271
AclWI	GGATC	6 cut(s)	280, 961, 974, 981, 1245, 1258
AcoI	YGGCCR	1 cut(s)	1086
AcsI	RAATTY	1 cut(s)	201
AcuI	CTGAAG	2 cut(s)	690, 1207
AcyI	GRCGYC	1 cut(s)	833
AfaI	GTAC	8 cut(s)	136, 173, 401, 434, 458, 573, 1036, 1214
AfiI	CCNNNNNNNGG	5 cut(s)	479, 621, 664, 976, 1224
AflIII	ACRYGT	1 cut(s)	1156
AgeI	ACCGGT	1 cut(s)	1015
AgsI	TTSAA	2 cut(s)	73, 1064
AhdI	GACNNNNNGTC	1 cut(s)	185
AhlI	ACTAGT	1 cut(s)	1288
AjiI	CACGTC	1 cut(s)	1157
AjnI	CCWGG	2 cut(s)	771, 1024
AleI	CACNNNNGTG	1 cut(s)	280
AluBI	AGCT	4 cut(s)	69, 694, 854, 860
AluI	AGCT	4 cut(s)	69, 694, 854, 860
Alw21I	GWGCWC	3 cut(s)	287, 830, 891
Alw26I	GTCTC	1 cut(s)	635
Alw44I	GTGCAC	1 cut(s)	826
AlwI	GGATC	6 cut(s)	280, 961, 974, 981, 1245, 1258
AlwNI	CAGNNNCTG	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	5 cut(s)	123, 612, 864, 1086, 1101
ApaI	GGGCCC	1 cut(s)	616
ApaLI	GTGCAC	1 cut(s)	826
ApeKI	GCWGC	4 cut(s)	223, 388, 694, 838
ApoI	RAATTY	1 cut(s)	201
AsiGI	ACCGGT	1 cut(s)	1015
Asp700I	GAANNNNTTC	1 cut(s)	720
Asp718I	GGTACC	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	4 cut(s)	612, 613, 865, 1138
AsuC2I	CCSGG	3 cut(s)	176, 177, 971
AsuHPI	GGTGA	2 cut(s)	492, 757
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	1138
AxyI	CCTNAGG	1 cut(s)	912
BaeGI	GKGCMC	3 cut(s)	616, 830, 943
BamHI	GGATCC	2 cut(s)	966, 1250
BanI	GGYRCC	2 cut(s)	171, 646
BanII	GRGCYC	1 cut(s)	616
BarI	GAAGNNNNNNTAC	4 cut(s)	272, 304, 1205, 1237
BbsI	GAAGAC	1 cut(s)	960
Bbv12I	GWGCWC	3 cut(s)	287, 830, 891
BbvI	GCAGC	4 cut(s)	235, 375, 681, 825
BccI	CCATC	7 cut(s)	44, 263, 602, 929, 1023, 1145, 1189
BceAI	ACGGC	2 cut(s)	541, 1160
BcgI	CGANNNNNNTGC	6 cut(s)	465, 499, 820, 854, 1250, 1284
BciT130I	CCWGG	2 cut(s)	773, 1026
BcnI	CCSGG	3 cut(s)	176, 177, 971
BcoDI	GTCTC	1 cut(s)	635
BcuI	ACTAGT	1 cut(s)	1288
BfaI	CTAG	1 cut(s)	1289
BfuAI	ACCTGC	2 cut(s)	420, 655
BisI	GCNGC	7 cut(s)	48, 224, 389, 409, 695, 836, 839
BlsI	GCNGC	7 cut(s)	49, 225, 390, 410, 696, 837, 840
Bme1390I	CCNGG	5 cut(s)	176, 177, 773, 971, 1026
Bme18I	GGWCC	1 cut(s)	1138
BmeRI	GACNNNNNGTC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	175
BmgBI	CACGTC	1 cut(s)	1157
BmgT120I	GGNCC	4 cut(s)	612, 613, 865, 1138
BmrFI	CCNGG	5 cut(s)	176, 177, 773, 971, 1026
BmsI	GCATC	2 cut(s)	538, 1043
BoxI	GACNNNNGTC	1 cut(s)	747
BpiI	GAAGAC	1 cut(s)	960
BpmI	CTGGAG	4 cut(s)	380, 644, 840, 1183
Bpu10I	CCTNAGC	1 cut(s)	1098
BpuMI	CCSGG	3 cut(s)	176, 177, 971
BsaHI	GRCGYC	1 cut(s)	833
BsaJI	CCNNGG	3 cut(s)	175, 364, 1024
BsaWI	WCCGGW	2 cut(s)	1015, 1278
BsaXI	ACNNNNNCTCC	6 cut(s)	634, 664, 838, 868, 1110, 1140
Bsc4I	CCNNNNNNNGG	5 cut(s)	479, 621, 664, 976, 1224
Bse118I	RCCGGY	2 cut(s)	1015, 1084
Bse1I	ACTGG	1 cut(s)	397
Bse21I	CCTNAGG	1 cut(s)	912
BseBI	CCWGG	2 cut(s)	773, 1026
BseDI	CCNNGG	3 cut(s)	175, 364, 1024
BseGI	GGATG	9 cut(s)	274, 553, 613, 934, 940, 985, 1034, 1173, 1181
BseLI	CCNNNNNNNGG	5 cut(s)	479, 621, 664, 976, 1224
BseMII	CTCAG	2 cut(s)	903, 1112
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	4 cut(s)	920, 929, 932, 1131
BseSI	GKGCMC	3 cut(s)	616, 830, 943
BseXI	GCAGC	4 cut(s)	235, 375, 681, 825
BseYI	CCCAGC	3 cut(s)	65, 328, 1208
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	5 cut(s)	125, 614, 866, 1088, 1103
BshNI	GGYRCC	2 cut(s)	171, 646
BshTI	ACCGGT	1 cut(s)	1015
BsiHKAI	GWGCWC	3 cut(s)	287, 830, 891
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	6 cut(s)	117, 176, 971, 1016, 1085, 1279
BslFI	GGGAC	2 cut(s)	192, 1163
BslI	CCNNNNNNNGG	5 cut(s)	479, 621, 664, 976, 1224
BsmAI	GTCTC	1 cut(s)	635
BsmBI	CGTCTC	1 cut(s)	635
BsmFI	GGGAC	2 cut(s)	192, 1163
BsnI	GGCC	5 cut(s)	125, 614, 866, 1088, 1103
BsoBI	CYCGRG	1 cut(s)	175
Bsp120I	GGGCCC	1 cut(s)	612
Bsp1286I	GDGCHC	5 cut(s)	287, 616, 830, 891, 943
Bsp143I	GATC	4 cut(s)	272, 966, 973, 1250
BspACI	CCGC	9 cut(s)	47, 252, 316, 369, 408, 605, 697, 836, 1271
BspANI	GGCC	5 cut(s)	125, 614, 866, 1088, 1103
BspCNI	CTCAG	2 cut(s)	904, 1111
BspFNI	CGCG	1 cut(s)	408
BspMI	ACCTGC	2 cut(s)	420, 655
BspPI	GGATC	6 cut(s)	280, 961, 974, 981, 1245, 1258
BspT107I	GGYRCC	2 cut(s)	171, 646
BsrBI	CCGCTC	2 cut(s)	47, 254
BsrFI	RCCGGY	2 cut(s)	1015, 1084
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	2 cut(s)	1015, 1084
BssECI	CCNNGG	3 cut(s)	175, 364, 1024
BssMI	GATC	4 cut(s)	272, 966, 973, 1250
BssNI	GRCGYC	1 cut(s)	833
Bst2UI	CCWGG	2 cut(s)	773, 1026
Bst4CI	ACNGT	5 cut(s)	55, 562, 646, 811, 1076
BstACI	GRCGYC	1 cut(s)	833
BstC8I	GCNNGC	1 cut(s)	1086
BstDEI	CTNAG	3 cut(s)	912, 1098, 1202
BstEII	GGTNACC	1 cut(s)	818
BstENI	CCTNNNNNAGG	1 cut(s)	662
BstF5I	GGATG	9 cut(s)	274, 553, 613, 934, 940, 985, 1034, 1173, 1181
BstFNI	CGCG	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	4 cut(s)	275, 969, 976, 1253
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	4 cut(s)	272, 966, 973, 1250
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 313, 611, 1094
BstNI	CCWGG	2 cut(s)	773, 1026
BstNSI	RCATGY	1 cut(s)	895
BstPAI	GACNNNNGTC	1 cut(s)	747
BstPI	GGTNACC	1 cut(s)	818
BstSCI	CCNGG	5 cut(s)	174, 175, 771, 969, 1024
BstSLI	GKGCMC	3 cut(s)	616, 830, 943
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	4 cut(s)	235, 375, 681, 825
BstV2I	GAAGAC	1 cut(s)	960
BstX2I	RGATCY	2 cut(s)	966, 1250
BstYI	RGATCY	2 cut(s)	966, 1250
Bsu36I	CCTNAGG	1 cut(s)	912
BsuRI	GGCC	5 cut(s)	125, 614, 866, 1088, 1103
BtrI	CACGTC	1 cut(s)	1157
BtsCI	GGATG	9 cut(s)	274, 553, 613, 934, 940, 985, 1034, 1173, 1181
BtsIMutI	CAGTG	4 cut(s)	243, 558, 807, 1072
BveI	ACCTGC	2 cut(s)	420, 655
Cac8I	GCNNGC	1 cut(s)	1086
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	429
Cfr10I	RCCGGY	2 cut(s)	1015, 1084
Cfr13I	GGNCC	4 cut(s)	612, 613, 865, 1138
Cfr9I	CCCGGG	1 cut(s)	175
CseI	GACGC	2 cut(s)	414, 841
Csp6I	GTAC	8 cut(s)	135, 172, 400, 433, 457, 572, 1035, 1213
CspAI	ACCGGT	1 cut(s)	1015
CviAII	CATG	7 cut(s)	150, 412, 586, 590, 654, 892, 1268
CviQI	GTAC	8 cut(s)	135, 172, 400, 433, 457, 572, 1035, 1213
DdeI	CTNAG	3 cut(s)	912, 1098, 1202
DpnI	GATC	4 cut(s)	274, 968, 975, 1252
DpnII	GATC	4 cut(s)	272, 966, 973, 1250
DriI	GACNNNNNGTC	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	1086
Eam1105I	GACNNNNNGTC	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	1138
Eco57I	CTGAAG	2 cut(s)	690, 1207
Eco81I	CCTNAGG	1 cut(s)	912
Eco88I	CYCGRG	1 cut(s)	175
Eco91I	GGTNACC	1 cut(s)	818
EcoNI	CCTNNNNNAGG	1 cut(s)	662
EcoO109I	RGGNCCY	2 cut(s)	612, 613
EcoO65I	GGTNACC	1 cut(s)	818
EcoRII	CCWGG	2 cut(s)	771, 1024
EcoT22I	ATGCAT	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	616
Esp3I	CGTCTC	1 cut(s)	635
FaeI	CATG	7 cut(s)	153, 415, 589, 593, 657, 895, 1271
FaqI	GGGAC	2 cut(s)	192, 1163
FatI	CATG	7 cut(s)	149, 411, 585, 589, 653, 891, 1267
FauI	CCCGC	1 cut(s)	309
FauNDI	CATATG	3 cut(s)	31, 924, 1123
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	7 cut(s)	48, 224, 389, 409, 695, 836, 839
FokI	GGATG	9 cut(s)	281, 560, 620, 941, 947, 992, 1041, 1168, 1180
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	7 cut(s)	48, 224, 389, 409, 695, 836, 839
FspBI	CTAG	1 cut(s)	1289
FspI	TGCGCA	1 cut(s)	428
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	7 cut(s)	48, 224, 389, 409, 695, 836, 839
GsaI	CCCAGC	3 cut(s)	69, 332, 1212
GsuI	CTGGAG	4 cut(s)	380, 644, 840, 1183
HaeIII	GGCC	5 cut(s)	125, 614, 866, 1088, 1103
HapII	CCGG	6 cut(s)	117, 176, 971, 1016, 1085, 1279
HgaI	GACGC	2 cut(s)	414, 841
HhaI	GCGC	1 cut(s)	429
Hin1I	GRCGYC	1 cut(s)	833
Hin1II	CATG	7 cut(s)	153, 415, 589, 593, 657, 895, 1271
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	3 cut(s)	670, 1021, 1276
HindII	GTYRAC	3 cut(s)	670, 1021, 1276
HinfI	GANTC	3 cut(s)	19, 86, 248
HpaI	GTTAAC	1 cut(s)	1021
HpaII	CCGG	6 cut(s)	117, 176, 971, 1016, 1085, 1279
HphI	GGTGA	2 cut(s)	492, 757
Hpy166II	GTNNAC	7 cut(s)	442, 629, 670, 765, 828, 1021, 1276
Hpy188I	TCNGA	7 cut(s)	7, 18, 24, 365, 538, 1048, 1150
Hpy188III	TCNNGA	3 cut(s)	977, 1141, 1162
Hpy8I	GTNNAC	7 cut(s)	442, 629, 670, 765, 828, 1021, 1276
Hpy99I	CGWCG	5 cut(s)	191, 239, 299, 753, 835
HpyCH4III	ACNGT	5 cut(s)	55, 562, 646, 811, 1076
HpyCH4IV	ACGT	7 cut(s)	186, 294, 540, 685, 748, 784, 1156
HpyCH4V	TGCA	6 cut(s)	589, 828, 841, 895, 1056, 1237
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 313, 611, 1094
HpyF3I	CTNAG	3 cut(s)	912, 1098, 1202
HpySE526I	ACGT	7 cut(s)	186, 294, 540, 685, 748, 784, 1156
Hsp92I	GRCGYC	1 cut(s)	833
Hsp92II	CATG	7 cut(s)	153, 415, 589, 593, 657, 895, 1271
HspAI	GCGC	1 cut(s)	427
KpnI	GGTACC	1 cut(s)	175
KroI	GCCGGC	1 cut(s)	1084
KroNI	GCCGGC	1 cut(s)	1086
KspAI	GTTAAC	1 cut(s)	1021
Kzo9I	GATC	4 cut(s)	272, 966, 973, 1250
LmnI	GCTCC	5 cut(s)	319, 859, 907, 919, 1118
Lsp1109I	GCAGC	4 cut(s)	235, 375, 681, 825
LweI	GCATC	2 cut(s)	538, 1043
MaeI	CTAG	1 cut(s)	1289
MaeII	ACGT	7 cut(s)	186, 294, 540, 685, 748, 784, 1156
MaeIII	GTNAC	3 cut(s)	556, 818, 1070
MalI	GATC	4 cut(s)	274, 968, 975, 1252
MbiI	CCGCTC	2 cut(s)	47, 254
MboI	GATC	4 cut(s)	272, 966, 973, 1250
MboII	GAAGA	5 cut(s)	962, 965, 998, 1004, 1141
MflI	RGATCY	2 cut(s)	966, 1250
MhlI	GDGCHC	5 cut(s)	287, 616, 830, 891, 943
MluCI	AATT	5 cut(s)	79, 91, 201, 300, 1059
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	3 cut(s)	720, 1026, 1242
Mph1103I	ATGCAT	1 cut(s)	591
MroNI	GCCGGC	1 cut(s)	1084
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	1 cut(s)	1020
MslI	CAYNNNNRTG	2 cut(s)	280, 927
MspA1I	CMGCKG	2 cut(s)	838, 860
MspI	CCGG	6 cut(s)	117, 176, 971, 1016, 1085, 1279
MspR9I	CCNGG	5 cut(s)	176, 177, 773, 971, 1026
MvaI	CCWGG	2 cut(s)	773, 1026
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	4 cut(s)	56, 313, 611, 1094
NaeI	GCCGGC	1 cut(s)	1086
NciI	CCSGG	3 cut(s)	176, 177, 971
NdeI	CATATG	3 cut(s)	31, 924, 1123
NdeII	GATC	4 cut(s)	272, 966, 973, 1250
NgoMIV	GCCGGC	1 cut(s)	1084
NlaIII	CATG	7 cut(s)	153, 415, 589, 593, 657, 895, 1271
NmuCI	GTSAC	2 cut(s)	556, 1070
NsbI	TGCGCA	1 cut(s)	428
NsiI	ATGCAT	1 cut(s)	591
NspI	RCATGY	1 cut(s)	895
OliI	CACNNNNGTG	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PdiI	GCCGGC	1 cut(s)	1086
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	2 cut(s)	19, 248
PflFI	GACNNNGTC	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	969
PinAI	ACCGGT	1 cut(s)	1015
PkrI	GCNGC	7 cut(s)	49, 225, 390, 410, 696, 837, 840
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PshAI	GACNNNNGTC	1 cut(s)	747
Psp6I	CCWGG	2 cut(s)	771, 1024
PspEI	GGTNACC	1 cut(s)	818
PspFI	CCCAGC	3 cut(s)	65, 328, 1208
PspGI	CCWGG	2 cut(s)	771, 1024
PspOMI	GGGCCC	1 cut(s)	612
PspPI	GGNCC	4 cut(s)	612, 613, 865, 1138
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	2 cut(s)	966, 1250
PsyI	GACNNNGTC	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	860
RsaI	GTAC	8 cut(s)	136, 173, 401, 434, 458, 573, 1036, 1214
RsaNI	GTAC	8 cut(s)	135, 172, 400, 433, 457, 572, 1035, 1213
RseI	CAYNNNNRTG	2 cut(s)	280, 927
SalI	GTCGAC	1 cut(s)	668
SaqAI	TTAA	1 cut(s)	1020
SatI	GCNGC	7 cut(s)	48, 224, 389, 409, 695, 836, 839
Sau3AI	GATC	4 cut(s)	272, 966, 973, 1250
Sau96I	GGNCC	4 cut(s)	612, 613, 865, 1138
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	5 cut(s)	176, 177, 773, 971, 1026
SduI	GDGCHC	5 cut(s)	287, 616, 830, 891, 943
SfaNI	GCATC	2 cut(s)	538, 1043
SinI	GGWCC	1 cut(s)	1138
SmaI	CCCGGG	1 cut(s)	177
SmiMI	CAYNNNNRTG	2 cut(s)	280, 927
SpeI	ACTAGT	1 cut(s)	1288
Sse9I	AATT	5 cut(s)	79, 91, 201, 300, 1059
SsiI	CCGC	9 cut(s)	47, 252, 316, 369, 408, 605, 697, 836, 1271
SspMI	CTAG	1 cut(s)	1289
StyD4I	CCNGG	5 cut(s)	174, 175, 771, 969, 1024
TaaI	ACNGT	5 cut(s)	55, 562, 646, 811, 1076
TaiI	ACGT	7 cut(s)	189, 297, 543, 688, 751, 787, 1159
TaqI	TCGA	9 cut(s)	189, 297, 379, 669, 729, 804, 814, 1260, 1296
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	5 cut(s)	79, 91, 201, 300, 1059
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	3 cut(s)	50, 411, 838
TfiI	GAWTC	2 cut(s)	19, 248
Tru1I	TTAA	1 cut(s)	1020
Tru9I	TTAA	1 cut(s)	1020
TscAI	CASTG	4 cut(s)	250, 565, 814, 1079
TseFI	GTSAC	2 cut(s)	556, 1070
TseI	GCWGC	4 cut(s)	223, 388, 694, 838
Tsp45I	GTSAC	2 cut(s)	556, 1070
TspDTI	ATGAA	6 cut(s)	89, 145, 409, 428, 1005, 1184
TspGWI	ACGGA	3 cut(s)	292, 781, 979
TspMI	CCCGGG	1 cut(s)	175
TspRI	CASTG	4 cut(s)	250, 565, 814, 1079
Tth111I	GACNNNGTC	1 cut(s)	359
VneI	GTGCAC	1 cut(s)	826
VpaK11BI	GGWCC	1 cut(s)	1138
XagI	CCTNNNNNAGG	1 cut(s)	662
XapI	RAATTY	1 cut(s)	201
XceI	RCATGY	1 cut(s)	895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1148
XmaI	CCCGGG	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	1 cut(s)	1289
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.