Rh3DG304800

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000124
Physical Location & Seq
Reverse (-)
32335523 .. 32342954
7432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG304800.1

Sequence Viewer

Length: 2490 bp
ATGAAGGCCCGGCGAGGTAATCTATTCGGTTCCCCACCAAATATCACAGGAGCCACTGCAGCAAATGACTCACCCAATACCCCTGATGTGGCTACGAGATCAACTGAACTTGTTATGGGGGACTTGGTGACAAATTCCAAACCCTATGAGTTCACACTGACCGTATCTGGACTCTCCGTTGAAAAGGTGGCTGACATAGCTGAGATGGGCTTTGATGGTCTCTTGCAGATTAGATGCAACACTCTTGTTGGACCTGTCAGGAGGCTGATGGTGCACAGTGTTGACCTCGGTAACCGCAGAGTGTCGATAATGGGCCAGAACTTTGCAGTTACTCCACATGAGTTTGGCCGTGTAATGGGAGTGCAGGATGGAGGCTCTGACTTTGAACTGGGGATTGCCACAGACGTTGCTGAGTATGGCATGATTGTGGAAGACATGTGTGACAGAGAAGGAAGGATCCAGTACTGTCATCTGAAGGAAATAGTACGGGACCGTGAGGAAGCCGACGACAAGTTCAGGATCGCATTTTCCTTGCTTGCACTAGGTTTGGTTCTGTGCCCTACAACAGATGACGTTGTTGACACGTCTCTGATTCTACCCCTTCTGGAAACGGGACGCATTGGGCAGAAGAACTGGGCTTCCTTTTGTCTCCAAAGATTGCTAGACTCTGTGACGGCCCAAAGGGAACATGGGGACGGTGTTGTTGGGGGGTGTGTTCTCTTCCTCCAGGTTCTATACTTCGAGAAGGTCGGCTCGGCTTGTTTTCATATTGATGGGTCTATACTTCCACTTAAGGCCTGGGGGGACTTTGAGGTCAGGGAGTTGATAACCAGGGTTAGGACATATGGTGGCTTTAAGAGTCCAATTGTCATGATGGAGAGGAACAAGCGGGTGAAAATGGCTAGTAAATGTGCCGATGATGATGGTGAGTTTGGACTCGGACTGAGGAAGTCAGTTCATGAGGACATCTTTGACGTCAAGTTGGAGTTCATGGGGGTCAAGGGTGACGTGTGGAGGCTCATGGATGCTTGTGGGAGGATTCAGCCTGATGTGGCCCAACTAGCAAGGAAAGTGGAGATTATAGCACATCAGATAAGCAGTTTGAGGGAGGAATGTGCCGACATGGTGAAGATCCAACTGCTGAGATCGGCAAACAGGAGGGGGGATGACTGCAACGTTCACACAGTCCCTGTGTGGAAACCGCGGAGGAGGGATGGAATGGGGAGTGGAGATTCAGTCCTCCATGCTGACACATTTCAGGAGGAAGAGAGCTTGCAGCGAATGAAGGCAAAATCAAAGCTATGTGATAATGCTTTTGGTAAGGCAGTCAAGGCTGTATCTGCCAGCTCAAGCAATCCCGGTGCCGCCCCAACAAGAGAGATGAGAACATATCAGGGCGGGTGTGTGCCTGAATCCAAGGCAGTTGTATCTCCACATGCCAGGGCCATGTTCAATTATGCAGTCACCCGCAACGAGGAGGTCAATCATGTGATTAGTTCGGGCTGTAATGGAGCAGGGCTCACTAATGCCAAAAGTTGGATGCTGCCAGGACCTTACATGCTGATGCACCCTATAGGGAATGACGACATTCTCCTAATCAATTACATTTTCATGGGTGGGAAGAAAGTTACGATGGAGGAGGGAAGAACTATGGTTGCTTCAACCGGGAATCAGAAGGCACTACTTTACCGTGATGAGGCCTTATGCTTGGGGCCAGCCACAAATGTTTCCAGCTTTGAAAAGGCCAGTTCGTACAATGCAGGGGAATCGTTTCGGGAATGGGTGGAGCACACAAGGACATTGTGCAACCTTGATAGATTCAACGGTTGCATGAAGAATTGCAAGAGGATGTTTTTGCCGATGCACGAGGACAAGGCCGAGGGACATTGGTTTCTGATGGTGGTTGATCTAGAAAAGAAGGTGGCTGAGGTTTGGGACAGTCTGCCGACTCTGTCATCAGCAAGCAGTAGATGGGACCATGCACTGACAACGCTGCGCCATCTTGACCATTGCTTTTACTTTGACAAGTTGAGGATGGAAGGGACCAACATTGACTTTGGGTTATTCAACTATGTTGAGCCTGTAGATGCACCTAAACAGGCAAATGGTTTCGACTGTGGGGTTTATGTCATCCTTAATATGATGCACTACCAGACCAATTGGCTGAAAGGGGCCGGGTCAGATGATCTTAGAGCAAGGGTGCTTCTTCGGTGTCGCAAAGCCCCTGATAATGAGAGGGTTACGGTTACACTAAGAGAAGCACACTCCTTTGCTGTTGAGAAGGGATCTGAGGGAGGTATGAAGGAGGACAAGATAGTGGAGCCAAATGGATGGGAAGGTATTGATCTGTCTGAGTTTGATGAACTGGATGATGATTTGGGAGTCACTCAAGTTGGTGATCCGAGTACAGCGGCAATTGGTGAGTCAGGCATAGTGAAGAGGAACATGGACCTTAGGGAAGGCTTTCCCAAGGGAATGTTCCATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

829

Amino Acids

92.02

Weight (kDa)

5.7

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 592 - 717 1.7e-13 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 812
AatII GACGTC 1 cut(s) 978
AccB1I GGYRCC 1 cut(s) 1361
AccB7I CCANNNNNTGG 1 cut(s) 1536
AccII CGCG 1 cut(s) 1204
AciI CCGC 8 cut(s) 295, 889, 1202, 1204, 1365, 1398, 1468, 2411
AclI AACGTT 1 cut(s) 1176
AclWI GGATC 6 cut(s) 451, 464, 527, 1126, 2293, 2393
AcoI YGGCCR 1 cut(s) 346
AcsI RAATTY 1 cut(s) 133
AcuI CTGAAG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 975
AfaI GTAC 4 cut(s) 464, 486, 1754, 2407
AfiI CCNNNNNNNGG 6 cut(s) 88, 355, 837, 1474, 1536, 1696
AflII CTTAAG 1 cut(s) 791
AflIII ACRYGT 3 cut(s) 435, 582, 1008
AgsI TTSAA 7 cut(s) 182, 386, 1453, 1662, 1739, 1822, 2068
AjiI CACGTC 2 cut(s) 585, 1009
AjnI CCWGG 5 cut(s) 726, 797, 830, 1439, 1546
AjuI GAANNNNNNNTTGG 1 cut(s) 2462
AloI GAACNNNNNNTCC 2 cut(s) 623, 655
AluBI AGCT 5 cut(s) 200, 1272, 1300, 1347, 1734
AluI AGCT 5 cut(s) 200, 1272, 1300, 1347, 1734
Alw21I GWGCWC 2 cut(s) 276, 1791
Alw26I GTCTC 3 cut(s) 224, 591, 653
Alw44I GTGCAC 1 cut(s) 272
AlwI GGATC 6 cut(s) 451, 464, 527, 1126, 2293, 2393
AlwNI CAGNNNCTG 1 cut(s) 1190
ApaLI GTGCAC 1 cut(s) 272
ApeKI GCWGC 4 cut(s) 59, 1276, 1543, 1993
ApoI RAATTY 1 cut(s) 133
Asp700I GAANNNNTTC 2 cut(s) 1770, 2463
AspLEI GCGC 1 cut(s) 1998
AsuC2I CCSGG 4 cut(s) 10, 1359, 1666, 2176
AsuHPI GGTGA 9 cut(s) 63, 139, 904, 938, 1016, 1138, 1456, 2408, 2432
AvaII GGWCC 6 cut(s) 251, 490, 1550, 1975, 2043, 2449
AxyI CCTNAGG 1 cut(s) 2453
BaeGI GKGCMC 2 cut(s) 276, 560
BamHI GGATCC 1 cut(s) 456
BanI GGYRCC 1 cut(s) 1361
BanII GRGCYC 1 cut(s) 1521
BauI CACGAG 1 cut(s) 1865
BbsI GAAGAC 1 cut(s) 438
Bbv12I GWGCWC 2 cut(s) 276, 1791
BbvCI CCTCAGC 1 cut(s) 1926
BbvI GCAGC 4 cut(s) 71, 1288, 1530, 1980
BceAI ACGGC 2 cut(s) 333, 690
BcgI CGANNNNNNTGC 2 cut(s) 1749, 1783
BciT130I CCWGG 5 cut(s) 728, 799, 832, 1441, 1548
BcnI CCSGG 4 cut(s) 10, 1359, 1666, 2176
BcoDI GTCTC 3 cut(s) 224, 591, 653
BfaI CTAG 5 cut(s) 542, 662, 903, 1061, 1910
BfmI CTRYAG 3 cut(s) 57, 1572, 2082
BfrI CTTAAG 1 cut(s) 791
BisI GCNGC 6 cut(s) 60, 1277, 1365, 1544, 1994, 2412
BlsI GCNGC 6 cut(s) 61, 1278, 1366, 1545, 1995, 2413
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 9 cut(s) 10, 728, 799, 832, 1359, 1441, 1548, 1666, 2176
Bme18I GGWCC 6 cut(s) 251, 490, 1550, 1975, 2043, 2449
BmgBI CACGTC 2 cut(s) 585, 1009
BmrFI CCNGG 9 cut(s) 10, 728, 799, 832, 1359, 1441, 1548, 1666, 2176
BmrI ACTGGG 2 cut(s) 398, 643
BmsI GCATC 7 cut(s) 224, 1015, 1530, 1554, 1851, 2077, 2133
BmuI ACTGGG 2 cut(s) 398, 643
BpiI GAAGAC 1 cut(s) 438
BplI GAGNNNNNCTC 2 cut(s) 1503, 1535
BpmI CTGGAG 1 cut(s) 710
Bpu10I CCTNAGC 1 cut(s) 1926
BpuEI CTTGAG 2 cut(s) 1333, 2373
BpuMI CCSGG 4 cut(s) 10, 1359, 1666, 2176
BsaHI GRCGYC 1 cut(s) 975
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 8 cut(s) 286, 798, 831, 1202, 1416, 1440, 1878, 2469
BsaXI ACNNNNNCTCC 2 cut(s) 1221, 1251
Bsc4I CCNNNNNNNGG 6 cut(s) 88, 355, 837, 1474, 1536, 1696
Bse1I ACTGG 5 cut(s) 393, 460, 638, 1746, 2370
Bse21I CCTNAGG 1 cut(s) 2453
Bse3DI GCAATG 1 cut(s) 2008
BseBI CCWGG 5 cut(s) 728, 799, 832, 1441, 1548
BseDI CCNNGG 8 cut(s) 286, 798, 831, 1202, 1416, 1440, 1878, 2469
BseLI CCNNNNNNNGG 6 cut(s) 88, 355, 837, 1474, 1536, 1696
BseMI GCAATG 1 cut(s) 2008
BseMII CTCAG 7 cut(s) 192, 402, 935, 1133, 1917, 2280, 2343
BseNI ACTGG 5 cut(s) 393, 460, 638, 1746, 2370
BseRI GAGGAG 3 cut(s) 1222, 1490, 1652
BseSI GKGCMC 2 cut(s) 276, 560
BseXI GCAGC 4 cut(s) 71, 1288, 1530, 1980
BsgI GTGCAG 1 cut(s) 383
Bsh1236I CGCG 1 cut(s) 1204
BshNI GGYRCC 1 cut(s) 1361
BsiHKAI GWGCWC 2 cut(s) 276, 1791
BsiSI CCGG 4 cut(s) 10, 1359, 1665, 2175
BslI CCNNNNNNNGG 6 cut(s) 88, 355, 837, 1474, 1536, 1696
BsmAI GTCTC 3 cut(s) 224, 591, 653
BsmBI CGTCTC 1 cut(s) 591
Bso31I GGTCTC 1 cut(s) 224
Bsp1286I GDGCHC 4 cut(s) 276, 560, 1521, 1791
BspACI CCGC 8 cut(s) 295, 889, 1202, 1204, 1365, 1398, 1468, 2411
BspCNI CTCAG 7 cut(s) 193, 403, 936, 1134, 1918, 2281, 2344
BspFNI CGCG 1 cut(s) 1204
BspHI TCATGA 2 cut(s) 870, 958
BspMAI CTGCAG 1 cut(s) 61
BspPI GGATC 6 cut(s) 451, 464, 527, 1126, 2293, 2393
BspT107I GGYRCC 1 cut(s) 1361
BspTI CTTAAG 1 cut(s) 791
BspTNI GGTCTC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 2008
BsrI ACTGG 5 cut(s) 393, 460, 638, 1746, 2370
BssECI CCNNGG 8 cut(s) 286, 798, 831, 1202, 1416, 1440, 1878, 2469
BssNI GRCGYC 1 cut(s) 975
BssSI CACGAG 1 cut(s) 1865
BssT1I CCWWGG 2 cut(s) 1416, 2469
Bst2BI CACGAG 1 cut(s) 1865
Bst2UI CCWGG 5 cut(s) 728, 799, 832, 1441, 1548
Bst6I CTCTTC 3 cut(s) 725, 1260, 2432
BstACI GRCGYC 1 cut(s) 975
BstAFI CTTAAG 1 cut(s) 791
BstC8I GCNNGC 5 cut(s) 537, 1274, 1345, 1716, 1963
BstDSI CCRYGG 1 cut(s) 1202
BstEII GGTNACC 1 cut(s) 290
BstFNI CGCG 1 cut(s) 1204
BstHHI GCGC 1 cut(s) 1998
BstMAI GTCTC 3 cut(s) 224, 591, 653
BstMWI GCNNNNNNNGC 6 cut(s) 59, 197, 271, 1061, 1331, 1340
BstNI CCWGG 5 cut(s) 728, 799, 832, 1441, 1548
BstNSI RCATGY 3 cut(s) 439, 1439, 1561
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 9 cut(s) 8, 726, 797, 830, 1357, 1439, 1546, 1664, 2174
BstSFI CTRYAG 3 cut(s) 57, 1572, 2082
BstSLI GKGCMC 2 cut(s) 276, 560
BstUI CGCG 1 cut(s) 1204
BstV1I GCAGC 4 cut(s) 71, 1288, 1530, 1980
BstV2I GAAGAC 1 cut(s) 438
BstX2I RGATCY 3 cut(s) 456, 1131, 2285
BstXI CCANNNNNNTGG 1 cut(s) 2331
BstYI RGATCY 3 cut(s) 456, 1131, 2285
Bsu36I CCTNAGG 1 cut(s) 2453
BtgI CCRYGG 1 cut(s) 1202
BtrI CACGTC 2 cut(s) 585, 1009
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 4 cut(s) 54, 155, 283, 1982
Cac8I GCNNGC 5 cut(s) 537, 1274, 1345, 1716, 1963
CaiI CAGNNNCTG 1 cut(s) 1190
CciI TCATGA 2 cut(s) 870, 958
CfoI GCGC 1 cut(s) 1998
Cfr42I CCGCGG 1 cut(s) 1205
CseI GACGC 1 cut(s) 624
Csp6I GTAC 4 cut(s) 463, 485, 1753, 2406
CspCI CAANNNNNGTGG 4 cut(s) 388, 423, 1053, 1088
CviQI GTAC 4 cut(s) 463, 485, 1753, 2406
DrdI GACNNNNNNGTC 1 cut(s) 812
DseDI GACNNNNNNGTC 1 cut(s) 812
EaeI YGGCCR 1 cut(s) 346
Eam1104I CTCTTC 3 cut(s) 725, 1260, 2432
EarI CTCTTC 3 cut(s) 725, 1260, 2432
Eco130I CCWWGG 2 cut(s) 1416, 2469
Eco147I AGGCCT 2 cut(s) 797, 1700
Eco24I GRGCYC 1 cut(s) 1521
Eco31I GGTCTC 1 cut(s) 224
Eco47I GGWCC 6 cut(s) 251, 490, 1550, 1975, 2043, 2449
Eco57I CTGAAG 1 cut(s) 494
Eco81I CCTNAGG 1 cut(s) 2453
Eco91I GGTNACC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 1550
EcoO65I GGTNACC 1 cut(s) 290
EcoRII CCWGG 5 cut(s) 726, 797, 830, 1439, 1546
EcoT14I CCWWGG 2 cut(s) 1416, 2469
EcoT38I GRGCYC 1 cut(s) 1521
ErhI CCWWGG 2 cut(s) 1416, 2469
Esp3I CGTCTC 1 cut(s) 591
FauI CCCGC 3 cut(s) 882, 1391, 1475
FauNDI CATATG 1 cut(s) 844
Fnu4HI GCNGC 6 cut(s) 60, 1277, 1365, 1544, 1994, 2412
FriOI GRGCYC 1 cut(s) 1521
Fsp4HI GCNGC 6 cut(s) 60, 1277, 1365, 1544, 1994, 2412
FspBI CTAG 5 cut(s) 542, 662, 903, 1061, 1910
GlaI GCGC 1 cut(s) 1997
GluI GCNGC 6 cut(s) 60, 1277, 1365, 1544, 1994, 2412
GsuI CTGGAG 1 cut(s) 710
HapII CCGG 4 cut(s) 10, 1359, 1665, 2175
HgaI GACGC 1 cut(s) 624
HhaI GCGC 1 cut(s) 1998
Hin1I GRCGYC 1 cut(s) 975
Hin6I GCGC 1 cut(s) 1996
HinP1I GCGC 1 cut(s) 1996
HincII GTYRAC 2 cut(s) 283, 580
HindII GTYRAC 2 cut(s) 283, 580
HpaII CCGG 4 cut(s) 10, 1359, 1665, 2175
HphI GGTGA 9 cut(s) 63, 139, 904, 938, 1016, 1138, 1456, 2408, 2432
Hpy166II GTNNAC 5 cut(s) 153, 274, 283, 580, 1180
Hpy8I GTNNAC 5 cut(s) 153, 274, 283, 580, 1180
Hpy99I CGWCG 1 cut(s) 509
HpyCH4IV ACGT 6 cut(s) 405, 573, 584, 975, 1008, 1176
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 197, 271, 1061, 1331, 1340
HpySE526I ACGT 6 cut(s) 405, 573, 584, 975, 1008, 1176
Hsp92I GRCGYC 1 cut(s) 975
HspAI GCGC 1 cut(s) 1996
KspI CCGCGG 1 cut(s) 1205
LmnI GCTCC 4 cut(s) 50, 1511, 1786, 2320
Lsp1109I GCAGC 4 cut(s) 71, 1288, 1530, 1980
LweI GCATC 7 cut(s) 224, 1015, 1530, 1554, 1851, 2077, 2133
MaeI CTAG 5 cut(s) 542, 662, 903, 1061, 1910
MaeII ACGT 6 cut(s) 405, 573, 584, 975, 1008, 1176
MfeI CAATTG 3 cut(s) 864, 2158, 2415
MflI RGATCY 3 cut(s) 456, 1131, 2285
MhlI GDGCHC 4 cut(s) 276, 560, 1521, 1791
MluCI AATT 7 cut(s) 133, 864, 1453, 1600, 1837, 2158, 2415
MlyI GAGTC 8 cut(s) 62, 165, 659, 868, 930, 1942, 2391, 2432
MmeI TCCRAC 4 cut(s) 229, 963, 1159, 1517
MroXI GAANNNNTTC 2 cut(s) 1770, 2463
MseI TTAA 3 cut(s) 792, 855, 2136
MslI CAYNNNNRTG 4 cut(s) 425, 771, 1562, 1610
MspA1I CMGCKG 2 cut(s) 1204, 2411
MspCI CTTAAG 1 cut(s) 791
MspI CCGG 4 cut(s) 10, 1359, 1665, 2175
MspR9I CCNGG 9 cut(s) 10, 728, 799, 832, 1359, 1441, 1548, 1666, 2176
MunI CAATTG 3 cut(s) 864, 2158, 2415
MvaI CCWGG 5 cut(s) 728, 799, 832, 1441, 1548
MvnI CGCG 1 cut(s) 1204
MwoI GCNNNNNNNGC 6 cut(s) 59, 197, 271, 1061, 1331, 1340
NciI CCSGG 4 cut(s) 10, 1359, 1666, 2176
NdeI CATATG 1 cut(s) 844
NmeAIII GCCGAG 2 cut(s) 734, 1903
NmuCI GTSAC 6 cut(s) 127, 440, 670, 1004, 1462, 2383
NspI RCATGY 3 cut(s) 439, 1439, 1561
PagI TCATGA 2 cut(s) 870, 958
PceI AGGCCT 2 cut(s) 797, 1700
PciI ACATGT 1 cut(s) 435
PdmI GAANNNNTTC 2 cut(s) 1770, 2463
PfeI GAWTC 7 cut(s) 592, 1039, 1232, 1412, 1669, 1766, 1818
PflFI GACNNNGTC 1 cut(s) 1951
PflMI CCANNNNNTGG 1 cut(s) 1536
PkrI GCNGC 6 cut(s) 61, 1278, 1366, 1545, 1995, 2413
PleI GAGTC 8 cut(s) 62, 165, 659, 867, 930, 1942, 2390, 2431
PpsI GAGTC 8 cut(s) 62, 165, 659, 867, 930, 1942, 2390, 2431
PpuMI RGGWCCY 1 cut(s) 1550
PscI ACATGT 1 cut(s) 435
Psp1406I AACGTT 1 cut(s) 1176
Psp5II RGGWCCY 1 cut(s) 1550
Psp6I CCWGG 5 cut(s) 726, 797, 830, 1439, 1546
PspEI GGTNACC 1 cut(s) 290
PspGI CCWGG 5 cut(s) 726, 797, 830, 1439, 1546
PspPPI RGGWCCY 1 cut(s) 1550
PstI CTGCAG 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 1190
PsuI RGATCY 3 cut(s) 456, 1131, 2285
PsyI GACNNNGTC 1 cut(s) 1951
RsaI GTAC 4 cut(s) 464, 486, 1754, 2407
RsaNI GTAC 4 cut(s) 463, 485, 1753, 2406
RseI CAYNNNNRTG 4 cut(s) 425, 771, 1562, 1610
SacII CCGCGG 1 cut(s) 1205
SaqAI TTAA 3 cut(s) 792, 855, 2136
SatI GCNGC 6 cut(s) 60, 1277, 1365, 1544, 1994, 2412
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 8 cut(s) 62, 165, 659, 868, 930, 1942, 2391, 2432
ScrFI CCNGG 9 cut(s) 10, 728, 799, 832, 1359, 1441, 1548, 1666, 2176
SduI GDGCHC 4 cut(s) 276, 560, 1521, 1791
SfaNI GCATC 7 cut(s) 224, 1015, 1530, 1554, 1851, 2077, 2133
SfcI CTRYAG 3 cut(s) 57, 1572, 2082
Sfr303I CCGCGG 1 cut(s) 1205
SgrBI CCGCGG 1 cut(s) 1205
SinI GGWCC 6 cut(s) 251, 490, 1550, 1975, 2043, 2449
SmiMI CAYNNNNRTG 4 cut(s) 425, 771, 1562, 1610
SmlI CTYRAG 3 cut(s) 791, 1348, 2388
SmoI CTYRAG 3 cut(s) 791, 1348, 2388
Sse9I AATT 7 cut(s) 133, 864, 1453, 1600, 1837, 2158, 2415
SseBI AGGCCT 2 cut(s) 797, 1700
SsiI CCGC 8 cut(s) 295, 889, 1202, 1204, 1365, 1398, 1468, 2411
SspMI CTAG 5 cut(s) 542, 662, 903, 1061, 1910
StuI AGGCCT 2 cut(s) 797, 1700
StyD4I CCNGG 9 cut(s) 8, 726, 797, 830, 1357, 1439, 1546, 1664, 2174
StyI CCWWGG 2 cut(s) 1416, 2469
TaiI ACGT 6 cut(s) 408, 576, 587, 978, 1011, 1179
TaqI TCGA 3 cut(s) 305, 741, 2112
TasI AATT 7 cut(s) 133, 864, 1453, 1600, 1837, 2158, 2415
TatI WGTACW 2 cut(s) 462, 2405
TauI GCSGC 2 cut(s) 1367, 2414
TfiI GAWTC 7 cut(s) 592, 1039, 1232, 1412, 1669, 1766, 1818
Tru1I TTAA 3 cut(s) 792, 855, 2136
Tru9I TTAA 3 cut(s) 792, 855, 2136
TscAI CASTG 4 cut(s) 61, 162, 283, 1989
TseFI GTSAC 6 cut(s) 127, 440, 670, 1004, 1462, 2383
TseI GCWGC 4 cut(s) 59, 1276, 1543, 1993
Tsp45I GTSAC 6 cut(s) 127, 440, 670, 1004, 1462, 2383
TspDTI ATGAA 9 cut(s) 17, 755, 947, 979, 1298, 1600, 1847, 2315, 2376
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 4 cut(s) 61, 162, 283, 1989
Tth111I GACNNNGTC 1 cut(s) 1951
Van91I CCANNNNNTGG 1 cut(s) 1536
Vha464I CTTAAG 1 cut(s) 791
VneI GTGCAC 1 cut(s) 272
VpaK11BI GGWCC 6 cut(s) 251, 490, 1550, 1975, 2043, 2449
XapI RAATTY 1 cut(s) 133
XbaI TCTAGA 1 cut(s) 1909
XceI RCATGY 3 cut(s) 439, 1439, 1561
XcmI CCANNNNNNNNNTGG 2 cut(s) 686, 795
XmnI GAANNNNTTC 2 cut(s) 1770, 2463
XspI CTAG 5 cut(s) 542, 662, 903, 1061, 1910
ZraI GACGTC 1 cut(s) 976
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.