Rw6G016620

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000124
Physical Location & Seq
Forward (+)
32806051 .. 32807112
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016620.1

Sequence Viewer

Length: 702 bp
ATGTTTGTTGAATGGTCAAATAGTCTAGAGCTCAGAGTTCGGAGGGTAAAAGATTCACGCAGTGGGTGGCACATACGAGGAGAGTATGCGGCCTCCACAAGTTCGACGATTTTCTTACCTGTGCATGAGGGTTCAACCAAGAATGGCCATTGGATTCTTATTGTGGTTGACATGGCCAAAAAGGCTGTTGAAGTATGGGATAGCGGACCAAGACCGGTCTTAAACCCAGAAAGAATGGAGAAAGTTTTGCAAGTGTTGGGACACATAGACCGGGTTATGTGGTTTGATAACATAACGCAGCCTGGAAGCATGATTATGGTTGAAAAGTTCTCAATCGTGGAGCCCGCAAATGTTCCAAAGCAGGGAAACTGTTATGATTGCGGTGTCTACGTGATACAAAATATGCAGCATTACCGGACACACTGGGCAAAAGAGTACGATTCTGAAGAACAGAGAGCAGCCATATTAGTGGCTTGTTTAATTGCCCCAAATAACGAGCTGGATGCTAGCTTAGGAGACGAAATCATCATAACCGAAAGCGGGGTTGACAAACAATCGAGCCAACTCGGCATATCACAGAAGAATAGAACAGGAAAGCAGCTGGAAGAATGGAAAGAGGGAGAGGAAGGGGAGTACTGGCGCAGACATCAAACTGGACGACCAACGGGCTTTCACAATGTTGGGGAGGGGAAAATAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3 Peptidase_C48

Protein Analysis

233

Amino Acids

26.58

Weight (kDa)

6.08

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 33 - 138 1.9e-15 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 387
AciI CCGC 5 cut(s) 89, 204, 345, 381, 540
AcoI YGGCCR 2 cut(s) 145, 174
AcuI CTGAAG 1 cut(s) 465
AdeI CACNNNGTG 1 cut(s) 62
AfaI GTAC 2 cut(s) 437, 635
AfiI CCNNNNNNNGG 2 cut(s) 362, 540
AgeI ACCGGT 1 cut(s) 214
AgsI TTSAA 4 cut(s) 11, 135, 191, 323
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 4 cut(s) 31, 499, 510, 601
AluI AGCT 4 cut(s) 31, 499, 510, 601
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 510
AoxI GGCC 3 cut(s) 90, 145, 174
ApeKI GCWGC 4 cut(s) 298, 406, 458, 598
AsiGI ACCGGT 1 cut(s) 214
AspLEI GCGC 1 cut(s) 642
AspS9I GGNCC 1 cut(s) 206
AsuC2I CCSGG 1 cut(s) 272
AsuNHI GCTAGC 1 cut(s) 506
AvaII GGWCC 1 cut(s) 206
BalI TGGCCA 2 cut(s) 147, 176
BanII GRGCYC 2 cut(s) 33, 345
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 4 cut(s) 310, 418, 470, 610
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BciT130I CCWGG 1 cut(s) 303
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 2 cut(s) 26, 507
BglI GCCNNNNNGGC 2 cut(s) 182, 567
BisI GCNGC 5 cut(s) 90, 299, 407, 459, 599
BlsI GCNGC 5 cut(s) 91, 300, 408, 460, 600
BmcAI AGTACT 1 cut(s) 635
Bme1390I CCNGG 2 cut(s) 272, 303
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 342
BmrFI CCNGG 2 cut(s) 272, 303
BmrI ACTGGG 1 cut(s) 433
BmsI GCATC 1 cut(s) 493
BmtI GCTAGC 1 cut(s) 510
BmuI ACTGGG 1 cut(s) 433
Bpu10I CCTNAGC 1 cut(s) 511
BpuMI CCSGG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 391
BsaWI WCCGGW 2 cut(s) 214, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 540
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 3 cut(s) 428, 641, 658
BseBI CCWGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 508
BseLI CCNNNNNNNGG 2 cut(s) 362, 540
BseMII CTCAG 1 cut(s) 46
BseNI ACTGG 3 cut(s) 428, 641, 658
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 4 cut(s) 310, 418, 470, 610
BshFI GGCC 3 cut(s) 92, 147, 176
BshTI ACCGGT 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 3 cut(s) 215, 271, 415
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 362, 540
BsmAI GTCTC 1 cut(s) 510
BsmBI CGTCTC 1 cut(s) 510
BsmFI GGGAC 1 cut(s) 273
BsnI GGCC 3 cut(s) 92, 147, 176
Bsp1286I GDGCHC 2 cut(s) 33, 345
BspACI CCGC 5 cut(s) 89, 204, 345, 381, 540
BspANI GGCC 3 cut(s) 92, 147, 176
BspCNI CTCAG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 342
BspOI GCTAGC 1 cut(s) 510
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 3 cut(s) 428, 641, 658
BssAI RCCGGY 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 2 cut(s) 345, 508
BstDEI CTNAG 2 cut(s) 32, 511
BstF5I GGATG 1 cut(s) 508
BstHHI GCGC 1 cut(s) 642
BstMAI GTCTC 1 cut(s) 510
BstMWI GCNNNNNNNGC 2 cut(s) 182, 567
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 2 cut(s) 270, 301
BstV1I GCAGC 4 cut(s) 310, 418, 470, 610
BstXI CCANNNNNNTGG 1 cut(s) 469
BsuRI GGCC 3 cut(s) 92, 147, 176
BtsCI GGATG 1 cut(s) 508
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 2 cut(s) 67, 421
Cac8I GCNNGC 2 cut(s) 345, 508
CfoI GCGC 1 cut(s) 642
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 2 cut(s) 436, 634
CspAI ACCGGT 1 cut(s) 214
CviAII CATG 3 cut(s) 125, 172, 310
CviQI GTAC 2 cut(s) 436, 634
DdeI CTNAG 2 cut(s) 32, 511
DraIII CACNNNGTG 1 cut(s) 62
EaeI YGGCCR 2 cut(s) 145, 174
Ecl136II GAGCTC 1 cut(s) 31
Eco24I GRGCYC 2 cut(s) 33, 345
Eco47I GGWCC 1 cut(s) 206
Eco53kI GAGCTC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 465
EcoICRI GAGCTC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 301
EcoT38I GRGCYC 2 cut(s) 33, 345
Esp3I CGTCTC 1 cut(s) 510
FaeI CATG 3 cut(s) 128, 175, 313
FaqI GGGAC 1 cut(s) 273
FatI CATG 3 cut(s) 124, 171, 309
FauI CCCGC 2 cut(s) 352, 533
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 5 cut(s) 90, 299, 407, 459, 599
FokI GGATG 1 cut(s) 515
FriOI GRGCYC 2 cut(s) 33, 345
Fsp4HI GCNGC 5 cut(s) 90, 299, 407, 459, 599
FspBI CTAG 2 cut(s) 26, 507
GlaI GCGC 1 cut(s) 641
GluI GCNGC 5 cut(s) 90, 299, 407, 459, 599
HaeIII GGCC 3 cut(s) 92, 147, 176
HapII CCGG 3 cut(s) 215, 271, 415
HhaI GCGC 1 cut(s) 642
Hin1II CATG 3 cut(s) 128, 175, 313
Hin6I GCGC 1 cut(s) 640
HinP1I GCGC 1 cut(s) 640
HincII GTYRAC 2 cut(s) 169, 547
HindII GTYRAC 2 cut(s) 169, 547
HinfI GANTC 3 cut(s) 53, 154, 440
HpaII CCGG 3 cut(s) 215, 271, 415
Hpy166II GTNNAC 3 cut(s) 169, 388, 547
Hpy188I TCNGA 3 cut(s) 35, 42, 445
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 3 cut(s) 169, 388, 547
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 620
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 3 cut(s) 124, 250, 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 567
HpyF3I CTNAG 2 cut(s) 32, 511
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 3 cut(s) 128, 175, 313
HspAI GCGC 1 cut(s) 640
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 4 cut(s) 310, 418, 470, 610
LweI GCATC 1 cut(s) 493
MaeI CTAG 2 cut(s) 26, 507
MaeII ACGT 1 cut(s) 390
MboII GAAGA 3 cut(s) 458, 592, 617
MhlI GDGCHC 2 cut(s) 33, 345
MlsI TGGCCA 2 cut(s) 147, 176
MluCI AATT 1 cut(s) 480
MluNI TGGCCA 2 cut(s) 147, 176
MnlI CCTC 7 cut(s) 36, 71, 103, 121, 610, 616, 679
Mox20I TGGCCA 2 cut(s) 147, 176
MscI TGGCCA 2 cut(s) 147, 176
MseI TTAA 2 cut(s) 221, 479
MslI CAYNNNNRTG 2 cut(s) 314, 467
Msp20I TGGCCA 2 cut(s) 147, 176
MspA1I CMGCKG 1 cut(s) 601
MspI CCGG 3 cut(s) 215, 271, 415
MspR9I CCNGG 2 cut(s) 272, 303
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 182, 567
NciI CCSGG 1 cut(s) 272
NheI GCTAGC 1 cut(s) 506
NlaIII CATG 3 cut(s) 128, 175, 313
NlaIV GGNNCC 1 cut(s) 342
NmeAIII GCCGAG 1 cut(s) 546
PfeI GAWTC 3 cut(s) 53, 154, 440
PinAI ACCGGT 1 cut(s) 214
PkrI GCNGC 5 cut(s) 91, 300, 408, 460, 600
Ppu21I YACGTR 1 cut(s) 391
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 601
RsaI GTAC 2 cut(s) 437, 635
RsaNI GTAC 2 cut(s) 436, 634
RseI CAYNNNNRTG 2 cut(s) 314, 467
SacI GAGCTC 1 cut(s) 33
SaqAI TTAA 2 cut(s) 221, 479
SatI GCNGC 5 cut(s) 90, 299, 407, 459, 599
Sau96I GGNCC 1 cut(s) 206
ScaI AGTACT 1 cut(s) 635
ScrFI CCNGG 2 cut(s) 272, 303
SduI GDGCHC 2 cut(s) 33, 345
SetI ASST 6 cut(s) 33, 121, 393, 501, 512, 603
SfaNI GCATC 1 cut(s) 493
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 2 cut(s) 314, 467
Sse9I AATT 1 cut(s) 480
SsiI CCGC 5 cut(s) 89, 204, 345, 381, 540
SspMI CTAG 2 cut(s) 26, 507
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 270, 301
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 1 cut(s) 393
TaqI TCGA 2 cut(s) 104, 557
TasI AATT 1 cut(s) 480
TatI WGTACW 1 cut(s) 633
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 3 cut(s) 53, 154, 440
Tru1I TTAA 2 cut(s) 221, 479
Tru9I TTAA 2 cut(s) 221, 479
TscAI CASTG 2 cut(s) 67, 428
TseI GCWGC 4 cut(s) 298, 406, 458, 598
TspRI CASTG 2 cut(s) 67, 428
VpaK11BI GGWCC 1 cut(s) 206
XbaI TCTAGA 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 387
XspI CTAG 2 cut(s) 26, 507
ZrmI AGTACT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.