Rroxscaffold_5G00350630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000124
Physical Location & Seq
Reverse (-)
24905742 .. 24906209
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350630.1

Sequence Viewer

Length: 423 bp
ATGAGCGGTGGAGGACTCCCATATGGGACCGCAAACGTTGAAAGAGGCAAGAGAGCCGGTGAACTCGTAATTGGAGACTTGGTGACACATTCCTACCCCGCCGAGTTCTCATTCACTGCTATGAGAGTCCGTTGGATATTGGGCTGCAACACCCTTGTTGGGCCCATTTGGAGGATGATGGTGCAACAAATCAACCTCGGGGACCACACGGTGTCTATTCATGGTCGCAAATATCTAATAAACGAGGAGTTAGGCGGTGTTATGGGAGTGCGTGATTGGAGTTTAGATTTTGAGTTGGAAGCTGCTACGTACGCATATGAATATAGGGTGGTTATCGATGATTTGTACGACGGTGCGGGTAGGATTCGGTATTGTCTTCGCCTTGCTTTCACTAGGTCTAGTGCTGTGCCTCGGGACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.68

Weight (kDa)

6.28

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 5 cut(s) 6, 30, 99, 255, 356
AclI AACGTT 1 cut(s) 36
AdeI CACNNNGTG 1 cut(s) 211
AfaI GTAC 2 cut(s) 311, 347
AfiI CCNNNNNNNGG 2 cut(s) 159, 171
AgsI TTSAA 1 cut(s) 41
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 69
Ama87I CYCGRG 2 cut(s) 197, 411
AoxI GGCC 1 cut(s) 161
ApaI GGGCCC 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 144, 302
AspS9I GGNCC 4 cut(s) 27, 161, 162, 202
AsuHPI GGTGA 2 cut(s) 71, 94
AvaI CYCGRG 2 cut(s) 197, 411
AvaII GGWCC 2 cut(s) 27, 202
BaeGI GKGCMC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 2 cut(s) 131, 289
BccI CCATC 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 2 cut(s) 393, 399
BisI GCNGC 2 cut(s) 145, 303
BlsI GCNGC 2 cut(s) 146, 304
Bme18I GGWCC 2 cut(s) 27, 202
BmeT110I CYCGRG 2 cut(s) 197, 411
BmgT120I GGNCC 4 cut(s) 27, 161, 162, 202
BmiI GGNNCC 3 cut(s) 28, 163, 203
BpiI GAAGAC 1 cut(s) 368
Bsa29I ATCGAT 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 196, 410
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 171
Bse118I RCCGGY 1 cut(s) 56
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 196, 410
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 159, 171
BseRI GAGGAG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 2 cut(s) 131, 289
BshFI GGCC 1 cut(s) 163
BshVI ATCGAT 1 cut(s) 336
BsiHKCI CYCGRG 2 cut(s) 197, 411
BsiSI CCGG 1 cut(s) 57
BsiWI CGTACG 1 cut(s) 309
BslFI GGGAC 2 cut(s) 40, 215
BslI CCNNNNNNNGG 2 cut(s) 159, 171
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 2 cut(s) 40, 215
BsnI GGCC 1 cut(s) 163
BsoBI CYCGRG 2 cut(s) 197, 411
Bsp120I GGGCCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 165
BspACI CCGC 5 cut(s) 6, 30, 99, 255, 356
BspANI GGCC 1 cut(s) 163
BspDI ATCGAT 1 cut(s) 336
BspLI GGNNCC 3 cut(s) 28, 163, 203
BsrBI CCGCTC 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 196, 410
Bst4CI ACNGT 3 cut(s) 211, 353, 419
BstBAI YACGTR 1 cut(s) 309
BstF5I GGATG 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstSLI GKGCMC 1 cut(s) 165
BstSNI TACGTA 1 cut(s) 309
BstV1I GCAGC 2 cut(s) 131, 289
BstV2I GAAGAC 1 cut(s) 368
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 1 cut(s) 163
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 4 cut(s) 27, 161, 162, 202
ClaI ATCGAT 1 cut(s) 336
Csp6I GTAC 2 cut(s) 310, 346
CviAII CATG 1 cut(s) 221
CviJI RGCY 4 cut(s) 56, 144, 163, 302
CviKI_1 RGCY 4 cut(s) 56, 144, 163, 302
CviQI GTAC 2 cut(s) 310, 346
DraIII CACNNNGTG 1 cut(s) 211
Eco105I TACGTA 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 165
Eco47I GGWCC 2 cut(s) 27, 202
Eco88I CYCGRG 2 cut(s) 197, 411
EcoT38I GRGCYC 1 cut(s) 165
FaeI CATG 1 cut(s) 224
FaiI YATR 8 cut(s) 22, 24, 122, 222, 263, 316, 318, 324
FaqI GGGAC 2 cut(s) 40, 215
FatI CATG 1 cut(s) 220
FauI CCCGC 2 cut(s) 106, 349
FauNDI CATATG 2 cut(s) 22, 316
Fnu4HI GCNGC 2 cut(s) 145, 303
FokI GGATG 1 cut(s) 187
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 2 cut(s) 145, 303
FspBI CTAG 2 cut(s) 393, 399
GluI GCNGC 2 cut(s) 145, 303
HaeIII GGCC 1 cut(s) 163
HapII CCGG 1 cut(s) 57
Hin1II CATG 1 cut(s) 224
HinfI GANTC 3 cut(s) 15, 126, 364
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 71, 94
Hpy166II GTNNAC 1 cut(s) 62
Hpy188III TCNNGA 1 cut(s) 413
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 353
HpyCH4III ACNGT 3 cut(s) 211, 353, 419
HpyCH4IV ACGT 2 cut(s) 36, 308
HpyCH4V TGCA 2 cut(s) 147, 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpySE526I ACGT 2 cut(s) 36, 308
Hsp92II CATG 1 cut(s) 224
LpnPI CCDG 1 cut(s) 70
Lsp1109I GCAGC 2 cut(s) 131, 289
MaeI CTAG 2 cut(s) 393, 399
MaeII ACGT 2 cut(s) 36, 308
MaeIII GTNAC 1 cut(s) 82
MbiI CCGCTC 1 cut(s) 6
MboII GAAGA 1 cut(s) 368
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 69
MlyI GAGTC 2 cut(s) 9, 135
MmeI TCCRAC 2 cut(s) 113, 276
MnlI CCTC 6 cut(s) 5, 38, 165, 206, 238, 420
MslI CAYNNNNRTG 1 cut(s) 119
MspI CCGG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeI CATATG 2 cut(s) 22, 316
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 3 cut(s) 28, 163, 203
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 364
Pfl23II CGTACG 1 cut(s) 309
PkrI GCNGC 2 cut(s) 146, 304
PleI GAGTC 2 cut(s) 9, 134
PpsI GAGTC 2 cut(s) 9, 134
Ppu21I YACGTR 1 cut(s) 309
Psp1406I AACGTT 1 cut(s) 36
PspLI CGTACG 1 cut(s) 309
PspN4I GGNNCC 3 cut(s) 28, 163, 203
PspOMI GGGCCC 1 cut(s) 161
PspPI GGNCC 4 cut(s) 27, 161, 162, 202
RsaI GTAC 2 cut(s) 311, 347
RsaNI GTAC 2 cut(s) 310, 346
RseI CAYNNNNRTG 1 cut(s) 119
SatI GCNGC 2 cut(s) 145, 303
Sau96I GGNCC 4 cut(s) 27, 161, 162, 202
SchI GAGTC 2 cut(s) 9, 135
SduI GDGCHC 1 cut(s) 165
SetI ASST 5 cut(s) 39, 198, 304, 311, 398
SinI GGWCC 2 cut(s) 27, 202
SmiMI CAYNNNNRTG 1 cut(s) 119
SnaBI TACGTA 1 cut(s) 309
Sse9I AATT 1 cut(s) 69
SsiI CCGC 5 cut(s) 6, 30, 99, 255, 356
SspMI CTAG 2 cut(s) 393, 399
TaaI ACNGT 3 cut(s) 211, 353, 419
TaiI ACGT 2 cut(s) 39, 311
TaqI TCGA 1 cut(s) 336
TasI AATT 1 cut(s) 69
TfiI GAWTC 1 cut(s) 364
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 144, 302
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 209, 333
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 27, 202
XspI CTAG 2 cut(s) 393, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.