Rh4DG129100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000124
Physical Location & Seq
Reverse (-)
21427746 .. 21428117
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG129100.1

Sequence Viewer

Length: 372 bp
ATGGATGGTGGAGGACTCCCATATGGGACCGCAAACGCTGAAAGAGGCAAGAGAGCCAGTGAACTCGTAATTGGAGACTTGGTGACGCATTCCAACCCCGCCGAGTTCTCATTCATTGTTGCAGATCTGTCACCAGAAAAGGTAGCTGCAGTAGCTGAAATAGGCTATAAGAGTCTATTGGATATTGTCTGCGACACCCTTGTTGGGCCCGTTTGGAGGATGATGGCGCAACACATCAATCTCAGGGACCACACAGTGTCCATTCATGGTCACAAATATCCAATAAACGAGGAGGAGTTCGGCCGTGTTATGGGAGTGAGTGATTGGGGTTCAGATTTTGAGTTGGGAGCTGCTACAGACGCAACTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

123

Amino Acids

13.27

Weight (kDa)

4.76

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 30, 99
AcoI YGGCCR 1 cut(s) 301
AdeI CACNNNGTG 1 cut(s) 256
AfiI CCNNNNNNNGG 3 cut(s) 204, 216, 310
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AluBI AGCT 3 cut(s) 146, 155, 350
AluI AGCT 3 cut(s) 146, 155, 350
Alw26I GTCTC 1 cut(s) 69
AlwNI CAGNNNCTG 1 cut(s) 155
AoxI GGCC 2 cut(s) 206, 301
ApaI GGGCCC 1 cut(s) 210
ApeKI GCWGC 2 cut(s) 146, 350
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 4 cut(s) 27, 206, 207, 247
AsuHPI GGTGA 2 cut(s) 94, 123
AvaII GGWCC 2 cut(s) 27, 247
BaeGI GKGCMC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 133, 337
BccI CCATC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 69
BfmI CTRYAG 2 cut(s) 147, 354
BglII AGATCT 1 cut(s) 124
BisI GCNGC 2 cut(s) 147, 351
BlsI GCNGC 2 cut(s) 148, 352
Bme18I GGWCC 2 cut(s) 27, 247
BmgT120I GGNCC 4 cut(s) 27, 206, 207, 247
BmiI GGNNCC 3 cut(s) 28, 208, 248
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 216, 310
Bse1I ACTGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 10, 225
BseLI CCNNNNNNNGG 3 cut(s) 204, 216, 310
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 2 cut(s) 305, 308
BseSI GKGCMC 1 cut(s) 210
BseX3I CGGCCG 1 cut(s) 301
BseXI GCAGC 2 cut(s) 133, 337
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 2 cut(s) 208, 303
BsiEI CGRYCG 1 cut(s) 304
BslFI GGGAC 2 cut(s) 40, 260
BslI CCNNNNNNNGG 3 cut(s) 204, 216, 310
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 2 cut(s) 40, 260
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 2 cut(s) 208, 303
Bsp120I GGGCCC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 2 cut(s) 30, 99
BspANI GGCC 2 cut(s) 208, 303
BspCNI CTCAG 1 cut(s) 255
BspLI GGNNCC 3 cut(s) 28, 208, 248
BspMAI CTGCAG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 57
BssMI GATC 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 256
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 10, 225
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 124
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 2 cut(s) 152, 359
BstSFI CTRYAG 2 cut(s) 147, 354
BstSLI GKGCMC 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 133, 337
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BstZI CGGCCG 1 cut(s) 301
BsuRI GGCC 2 cut(s) 208, 303
BtsCI GGATG 2 cut(s) 10, 225
BtsIMutI CAGTG 2 cut(s) 64, 261
CaiI CAGNNNCTG 1 cut(s) 155
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 4 cut(s) 27, 206, 207, 247
CseI GACGC 1 cut(s) 94
CviAII CATG 1 cut(s) 266
CviJI RGCY 7 cut(s) 56, 146, 155, 165, 208, 303, 350
CviKI_1 RGCY 7 cut(s) 56, 146, 155, 165, 208, 303, 350
DdeI CTNAG 1 cut(s) 242
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
DraIII CACNNNGTG 1 cut(s) 256
EaeI YGGCCR 1 cut(s) 301
EagI CGGCCG 1 cut(s) 301
EclXI CGGCCG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 210
Eco47I GGWCC 2 cut(s) 27, 247
Eco52I CGGCCG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 1 cut(s) 269
FaiI YATR 5 cut(s) 22, 24, 168, 267, 311
FaqI GGGAC 2 cut(s) 40, 260
FatI CATG 1 cut(s) 265
FauI CCCGC 1 cut(s) 106
FauNDI CATATG 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 147, 351
FokI GGATG 2 cut(s) 17, 232
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 147, 351
GlaI GCGC 1 cut(s) 228
GluI GCNGC 2 cut(s) 147, 351
HaeIII GGCC 2 cut(s) 208, 303
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 229
Hin1II CATG 1 cut(s) 269
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 2 cut(s) 15, 172
HphI GGTGA 2 cut(s) 94, 123
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 334
Hpy8I GTNNAC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 2 cut(s) 122, 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 359
HpyF3I CTNAG 1 cut(s) 242
Hsp92II CATG 1 cut(s) 269
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 347
LpnPI CCDG 3 cut(s) 70, 147, 229
Lsp1109I GCAGC 2 cut(s) 133, 337
MaeIII GTNAC 3 cut(s) 82, 129, 269
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 69
MlyI GAGTC 2 cut(s) 9, 181
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 5 cut(s) 5, 38, 210, 283, 286
Mva1269I GAATGC 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 152, 359
NdeI CATATG 1 cut(s) 22
NdeII GATC 1 cut(s) 124
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 3 cut(s) 28, 208, 248
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 3 cut(s) 82, 129, 269
PctI GAATGC 1 cut(s) 88
PkrI GCNGC 2 cut(s) 148, 352
PleI GAGTC 2 cut(s) 9, 180
PpsI GAGTC 2 cut(s) 9, 180
PspN4I GGNNCC 3 cut(s) 28, 208, 248
PspOMI GGGCCC 1 cut(s) 206
PspPI GGNCC 4 cut(s) 27, 206, 207, 247
PstI CTGCAG 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 124
SatI GCNGC 2 cut(s) 147, 351
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 4 cut(s) 27, 206, 207, 247
SchI GAGTC 2 cut(s) 9, 181
SduI GDGCHC 1 cut(s) 210
SetI ASST 4 cut(s) 144, 148, 157, 352
SfcI CTRYAG 2 cut(s) 147, 354
SinI GGWCC 2 cut(s) 27, 247
Sse9I AATT 1 cut(s) 69
SsiI CCGC 2 cut(s) 30, 99
TaaI ACNGT 1 cut(s) 256
TasI AATT 1 cut(s) 69
TscAI CASTG 2 cut(s) 64, 261
TseFI GTSAC 3 cut(s) 82, 129, 269
TseI GCWGC 2 cut(s) 146, 350
Tsp45I GTSAC 3 cut(s) 82, 129, 269
TspDTI ATGAA 2 cut(s) 103, 254
TspRI CASTG 2 cut(s) 64, 261
VpaK11BI GGWCC 2 cut(s) 27, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.