Rmu_ssc0000161.1_g000030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000161.1
OG0000124
Physical Location & Seq
Reverse (-)
121626 .. 122531
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000161.1_g000030.1.cds

Sequence Viewer

Length: 906 bp
atgggcattcacaacggggggcatgccattgaactcaggggtgacattagtcctgctgaatatgaaaatgttgtagctctgatgcttggcccagctggcaatatggtagtgaacaatctgaagttcattgtgcgtgacagggaaattgttgacgactgtttcattatagcttatgtaatgttggctctgaccctagtaatatgtccggaaacaagtaatgacgtagaaagtgggttgttgttgccattactagatacccgcagtataggagcggagaattgggtaacatttacagtggactacttgatggagggaataagaaagcatcgtgagggaggatccctggttgtagcgggatgtgcactatatctgcagctggtatattgtgacaaagttggtgagaagttactgccaaaggagcggctagtgtcacctgtgatggattggagccttggagagataaatgtgttgctgagtaggttagtagcagaaactaaaacgaagataatgggtgagacaagggacaattgtaataaggggactagtgtagatgaggcagtgaacgacgaggagtctttgggatttccattaagaaaatcactacacgaagacatgtttgatcttatggttgatgtgggaaggttaaaagatgatatggtggttgtgaaagaaatcgtaacggtaatcccgcagaaagtttcggagctaacaaatggtgtgttggtgcttttggaatctttattgaaggtgaaggaaacttatgttgccaaggttagagaggagtgccgattcatgcgggtgaacatgcatgatacagaggaacgacatgtaggggaggaatattgtagtccacatcgccatgcagtagatcaaggaattgaacagggaatatatagtgaaggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

301

Amino Acids

33.62

Weight (kDa)

4.88

Isoelectric Point (pI)

32.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 272, 421
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 6 cut(s) 259, 272, 353, 421, 689, 796
AclWI GGATC 2 cut(s) 333, 346
AcuI CTGAAG 1 cut(s) 140
AflIII ACRYGT 2 cut(s) 612, 826
AgsI TTSAA 3 cut(s) 32, 745, 881
AhdI GACNNNNNGTC 1 cut(s) 571
AhlI ACTAGT 1 cut(s) 542
AjnI CCWGG 1 cut(s) 342
AluBI AGCT 5 cut(s) 77, 95, 170, 376, 706
AluI AGCT 5 cut(s) 77, 95, 170, 376, 706
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 1 cut(s) 509
Alw44I GTGCAC 1 cut(s) 360
AlwI GGATC 2 cut(s) 333, 346
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 1 cut(s) 88
ApaLI GTGCAC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 373
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 6 cut(s) 53, 410, 423, 524, 760, 811
BaeGI GKGCMC 1 cut(s) 364
BamHI GGATCC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 615
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 1 cut(s) 385
BccI CCATC 2 cut(s) 301, 433
BciT130I CCWGG 1 cut(s) 344
BcoDI GTCTC 1 cut(s) 509
BcuI ACTAGT 1 cut(s) 542
BfaI CTAG 4 cut(s) 194, 251, 425, 543
BfmI CTRYAG 1 cut(s) 371
BglI GCCNNNNNGGC 1 cut(s) 96
BisI GCNGC 2 cut(s) 374, 422
BlsI GCNGC 2 cut(s) 375, 423
Bme1390I CCNGG 1 cut(s) 344
BmeRI GACNNNNNGTC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 2 cut(s) 340, 449
BmrFI CCNGG 1 cut(s) 344
BmsI GCATC 2 cut(s) 72, 334
BoxI GACNNNNGTC 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 615
BsaJI CCNNGG 3 cut(s) 342, 451, 768
BsaWI WCCGGW 1 cut(s) 205
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 1 cut(s) 344
BseDI CCNNGG 3 cut(s) 342, 451, 768
BseGI GGATG 1 cut(s) 362
BseMII CTCAG 2 cut(s) 49, 464
BseRI GAGGAG 2 cut(s) 584, 794
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 1 cut(s) 385
BseYI CCCAGC 1 cut(s) 91
BshFI GGCC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 2 cut(s) 536, 553
BsmAI GTCTC 1 cut(s) 509
BsmFI GGGAC 2 cut(s) 536, 553
BsmI GAATGC 1 cut(s) 6
BsnI GGCC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 364
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 3 cut(s) 338, 619, 868
BspACI CCGC 6 cut(s) 259, 272, 353, 421, 689, 796
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 2 cut(s) 48, 465
BspEI TCCGGA 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 340, 449
BspMAI CTGCAG 1 cut(s) 375
BspPI GGATC 2 cut(s) 333, 346
BsrBI CCGCTC 2 cut(s) 272, 421
BssECI CCNNGG 3 cut(s) 342, 451, 768
BssMI GATC 3 cut(s) 338, 619, 868
BssT1I CCWWGG 2 cut(s) 451, 768
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 3 cut(s) 158, 295, 682
BstC8I GCNNGC 2 cut(s) 24, 97
BstDEI CTNAG 2 cut(s) 35, 473
BstF5I GGATG 1 cut(s) 362
BstKTI GATC 3 cut(s) 341, 622, 871
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 3 cut(s) 338, 619, 868
BstMWI GCNNNNNNNGC 3 cut(s) 96, 359, 418
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 4 cut(s) 26, 616, 808, 830
BstPAI GACNNNNGTC 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 342
BstSFI CTRYAG 1 cut(s) 371
BstSLI GKGCMC 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 615
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BsuRI GGCC 1 cut(s) 90
BtgZI GCGATG 1 cut(s) 839
BtsCI GGATG 1 cut(s) 362
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 2 cut(s) 300, 564
Cac8I GCNNGC 2 cut(s) 24, 97
Cfr13I GGNCC 1 cut(s) 89
CviAII CATG 7 cut(s) 23, 613, 793, 805, 809, 827, 860
CviJI RGCY 9 cut(s) 77, 90, 95, 170, 185, 376, 424, 450, 706
CviKI_1 RGCY 9 cut(s) 77, 90, 95, 170, 185, 376, 424, 450, 706
DdeI CTNAG 2 cut(s) 35, 473
DpnI GATC 3 cut(s) 340, 621, 870
DpnII GATC 3 cut(s) 338, 619, 868
DriI GACNNNNNGTC 1 cut(s) 571
Eam1105I GACNNNNNGTC 1 cut(s) 571
Eco130I CCWWGG 2 cut(s) 451, 768
Eco57I CTGAAG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 2 cut(s) 451, 768
EcoT22I ATGCAT 1 cut(s) 810
ErhI CCWWGG 2 cut(s) 451, 768
FaeI CATG 7 cut(s) 26, 616, 796, 808, 812, 830, 863
FaqI GGGAC 2 cut(s) 536, 553
FatI CATG 7 cut(s) 22, 612, 792, 804, 808, 826, 859
FauI CCCGC 4 cut(s) 266, 346, 696, 789
Fnu4HI GCNGC 2 cut(s) 374, 422
FokI GGATG 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 374, 422
FspBI CTAG 4 cut(s) 194, 251, 425, 543
GluI GCNGC 2 cut(s) 374, 422
GsaI CCCAGC 1 cut(s) 95
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 206
Hin1II CATG 7 cut(s) 26, 616, 796, 808, 812, 830, 863
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 3 cut(s) 572, 734, 789
HpaII CCGG 1 cut(s) 206
HphI GGTGA 6 cut(s) 53, 410, 423, 524, 760, 811
Hpy166II GTNNAC 7 cut(s) 112, 151, 298, 362, 562, 802, 851
Hpy188I TCNGA 4 cut(s) 81, 120, 189, 703
Hpy188III TCNNGA 2 cut(s) 206, 329
Hpy8I GTNNAC 7 cut(s) 112, 151, 298, 362, 562, 802, 851
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 4 cut(s) 633, 739, 745, 893
HpyCH4III ACNGT 3 cut(s) 158, 295, 682
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 4 cut(s) 362, 373, 808, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 359, 418
HpyF3I CTNAG 2 cut(s) 35, 473
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 7 cut(s) 26, 616, 796, 808, 812, 830, 863
Kpn2I TCCGGA 1 cut(s) 205
Kzo9I GATC 3 cut(s) 338, 619, 868
LmnI GCTCC 4 cut(s) 269, 418, 447, 703
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 2 cut(s) 72, 334
MaeI CTAG 4 cut(s) 194, 251, 425, 543
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 7 cut(s) 41, 134, 283, 386, 405, 429, 676
MalI GATC 3 cut(s) 340, 621, 870
MbiI CCGCTC 2 cut(s) 272, 421
MboI GATC 3 cut(s) 338, 619, 868
MboII GAAGA 2 cut(s) 514, 620
MfeI CAATTG 1 cut(s) 526
MflI RGATCY 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 4 cut(s) 144, 277, 526, 876
MlyI GAGTC 1 cut(s) 581
MnlI CCTC 8 cut(s) 304, 325, 329, 547, 562, 772, 811, 829
Mph1103I ATGCAT 1 cut(s) 810
MroI TCCGGA 1 cut(s) 205
MseI TTAA 2 cut(s) 590, 644
MslI CAYNNNNRTG 2 cut(s) 797, 858
MspA1I CMGCKG 2 cut(s) 95, 376
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 344
MunI CAATTG 1 cut(s) 526
Mva1269I GAATGC 1 cut(s) 6
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 3 cut(s) 96, 359, 418
NdeII GATC 3 cut(s) 338, 619, 868
NlaIII CATG 7 cut(s) 26, 616, 796, 808, 812, 830, 863
NlaIV GGNNCC 2 cut(s) 340, 449
NmuCI GTSAC 4 cut(s) 41, 134, 386, 429
NsiI ATGCAT 1 cut(s) 810
NspI RCATGY 4 cut(s) 26, 616, 808, 830
PaeI GCATGC 1 cut(s) 26
PciI ACATGT 2 cut(s) 612, 826
PctI GAATGC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 734, 789
PkrI GCNGC 2 cut(s) 375, 423
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
PscI ACATGT 2 cut(s) 612, 826
PshAI GACNNNNGTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 2 cut(s) 340, 449
PspPI GGNCC 1 cut(s) 89
PstI CTGCAG 1 cut(s) 375
PsuI RGATCY 1 cut(s) 338
PvuII CAGCTG 2 cut(s) 95, 376
RseI CAYNNNNRTG 2 cut(s) 797, 858
SaqAI TTAA 2 cut(s) 590, 644
SatI GCNGC 2 cut(s) 374, 422
Sau3AI GATC 3 cut(s) 338, 619, 868
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 2 cut(s) 72, 334
SfcI CTRYAG 1 cut(s) 371
SmiMI CAYNNNNRTG 2 cut(s) 797, 858
SpeI ACTAGT 1 cut(s) 542
SphI GCATGC 1 cut(s) 26
Sse9I AATT 4 cut(s) 144, 277, 526, 876
SsiI CCGC 6 cut(s) 259, 272, 353, 421, 689, 796
SspI AATATT 1 cut(s) 842
SspMI CTAG 4 cut(s) 194, 251, 425, 543
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 2 cut(s) 451, 768
TaaI ACNGT 3 cut(s) 158, 295, 682
TaiI ACGT 1 cut(s) 225
TasI AATT 4 cut(s) 144, 277, 526, 876
TauI GCSGC 1 cut(s) 424
TfiI GAWTC 2 cut(s) 734, 789
Tru1I TTAA 2 cut(s) 590, 644
Tru9I TTAA 2 cut(s) 590, 644
TscAI CASTG 2 cut(s) 300, 564
TseFI GTSAC 4 cut(s) 41, 134, 386, 429
TseI GCWGC 1 cut(s) 373
Tsp45I GTSAC 4 cut(s) 41, 134, 386, 429
TspDTI ATGAA 4 cut(s) 78, 115, 151, 781
TspRI CASTG 2 cut(s) 300, 564
VneI GTGCAC 1 cut(s) 360
XceI RCATGY 4 cut(s) 26, 616, 808, 830
XspI CTAG 4 cut(s) 194, 251, 425, 543
Zsp2I ATGCAT 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.