RLG00000011848

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000124
Physical Location & Seq
Forward (+)
13253455 .. 13254258
804 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011848

Sequence Viewer

Length: 615 bp
ATGAAACTAAGATTCATACATGAATGGGAACGCTTTAACTTCGAGAATCGCTTGGGAAAACGTTGGTGCTGTGTGTTCACCTACCTGGGAAATCTGCAGTTCTCGGTTCTTGTGTTCGACACTGTTCGAGGAACCCTTTGCACGACGCCGCTGCAATTCACCCAAGCTCCAGACGCGCCTCCACATACCAATGGTATTAACCAAGAAGAGGGGAATCTGGACCCTGAGGAGGACCATAGGGATGCGGATGGGGCACGGGTGGAAGATATGGAGCAAGGAATCAATGAAGATGAAGTTGAAGAACGCGACGACGAACCTCCAGAGGAAAGGGTGCCAGCAACATGGTGTAGAGGGAGATCCTGCCAATGCACAATCCAGATATGTCACGGTTATCTACCAGCCAAGTTTGCTCAGTCCACATTTCCCAGAGGAACACCAGTTCAGATAAAGGTGCAGAAATCAGACGGACGTGTGTGGAGAATGAAAGCCGTCCCATCCAATACCACTCACTACTTAAGTGCTGGGTACACCAAATTCAGGCTGGACCTCAATCTGCCTATAGGGTCTGCAATCGAGCTCCATGTGGTTGACCGCAACAGATTTGTTTTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

205

Amino Acids

23.53

Weight (kDa)

5.44

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 131 - 201 2e-06 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 331
AccII CGCG 2 cut(s) 176, 306
AciI CCGC 3 cut(s) 149, 245, 592
AclI AACGTT 1 cut(s) 61
AclWI GGATC 1 cut(s) 351
AcsI RAATTY 1 cut(s) 533
AcyI GRCGYC 1 cut(s) 146
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 3 cut(s) 208, 229, 537
AflII CTTAAG 1 cut(s) 514
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 1 cut(s) 299
AjiI CACGTC 1 cut(s) 470
AjnI CCWGG 1 cut(s) 84
AloI GAACNNNNNNTCC 2 cut(s) 423, 455
AluBI AGCT 2 cut(s) 167, 577
AluI AGCT 2 cut(s) 167, 577
Alw21I GWGCWC 1 cut(s) 579
AlwI GGATC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 151
ApoI RAATTY 1 cut(s) 533
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 3 cut(s) 220, 232, 544
AsuHPI GGTGA 2 cut(s) 70, 151
AvaII GGWCC 3 cut(s) 220, 232, 544
AxyI CCTNAGG 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 138
BccI CCATC 2 cut(s) 242, 502
BceAI ACGGC 1 cut(s) 473
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BciT130I CCWGG 1 cut(s) 86
BfmI CTRYAG 2 cut(s) 95, 558
BfrI CTTAAG 1 cut(s) 514
BisI GCNGC 2 cut(s) 149, 152
BlsI GCNGC 2 cut(s) 150, 153
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 3 cut(s) 220, 232, 544
BmgBI CACGTC 1 cut(s) 470
BmgT120I GGNCC 3 cut(s) 220, 232, 544
BmiI GGNNCC 3 cut(s) 133, 222, 333
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 2 cut(s) 153, 303
BsaHI GRCGYC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 229, 537
Bse1I ACTGG 1 cut(s) 437
Bse21I CCTNAGG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 3 cut(s) 247, 253, 494
BseLI CCNNNNNNNGG 3 cut(s) 208, 229, 537
BseMII CTCAG 2 cut(s) 216, 425
BseNI ACTGG 1 cut(s) 437
BseRI GAGGAG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 1 cut(s) 138
BseYI CCCAGC 1 cut(s) 521
BsgI GTGCAG 1 cut(s) 473
Bsh1236I CGCG 2 cut(s) 176, 306
BshNI GGYRCC 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 579
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 3 cut(s) 208, 229, 537
BsmFI GGGAC 1 cut(s) 476
Bsp1286I GDGCHC 2 cut(s) 256, 579
Bsp143I GATC 1 cut(s) 356
BspACI CCGC 3 cut(s) 149, 245, 592
BspCNI CTCAG 2 cut(s) 217, 424
BspFNI CGCG 2 cut(s) 176, 306
BspLI GGNNCC 3 cut(s) 133, 222, 333
BspMAI CTGCAG 1 cut(s) 99
BspPI GGATC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 331
BspTI CTTAAG 1 cut(s) 514
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 1 cut(s) 356
BssNI GRCGYC 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 124, 389
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 146
BstAFI CTTAAG 1 cut(s) 514
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 3 cut(s) 8, 225, 411
BstF5I GGATG 3 cut(s) 247, 253, 494
BstFNI CGCG 2 cut(s) 176, 306
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 1 cut(s) 359
BstMBI GATC 1 cut(s) 356
BstMWI GCNNNNNNNGC 3 cut(s) 173, 251, 407
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 2 cut(s) 95, 558
BstSLI GKGCMC 1 cut(s) 256
BstUI CGCG 2 cut(s) 176, 306
BstV1I GCAGC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 356
BstXI CCANNNNNNTGG 1 cut(s) 342
BstYI RGATCY 1 cut(s) 356
Bsu36I CCTNAGG 1 cut(s) 225
BtrI CACGTC 1 cut(s) 470
BtsCI GGATG 3 cut(s) 247, 253, 494
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 336
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 3 cut(s) 220, 232, 544
CseI GACGC 2 cut(s) 154, 182
Csp6I GTAC 1 cut(s) 526
CviAII CATG 3 cut(s) 20, 342, 581
CviJI RGCY 5 cut(s) 167, 401, 488, 541, 577
CviKI_1 RGCY 5 cut(s) 167, 401, 488, 541, 577
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 3 cut(s) 8, 225, 411
DpnI GATC 1 cut(s) 358
DpnII GATC 1 cut(s) 356
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 579
Eco47I GGWCC 3 cut(s) 220, 232, 544
Eco53kI GAGCTC 1 cut(s) 577
Eco81I CCTNAGG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 577
EcoRII CCWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 579
FaeI CATG 3 cut(s) 23, 345, 584
FaiI YATR 9 cut(s) 17, 21, 186, 237, 269, 343, 382, 560, 582
FaqI GGGAC 1 cut(s) 476
FatI CATG 3 cut(s) 19, 341, 580
Fnu4HI GCNGC 2 cut(s) 149, 152
FokI GGATG 3 cut(s) 254, 260, 481
FriOI GRGCYC 1 cut(s) 579
Fsp4HI GCNGC 2 cut(s) 149, 152
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 149, 152
GsaI CCCAGC 1 cut(s) 525
GsuI CTGGAG 2 cut(s) 153, 303
HgaI GACGC 2 cut(s) 154, 182
HhaI GCGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 3 cut(s) 23, 345, 584
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 4 cut(s) 12, 46, 214, 279
HphI GGTGA 2 cut(s) 70, 151
Hpy166II GTNNAC 4 cut(s) 78, 417, 528, 589
Hpy188I TCNGA 2 cut(s) 444, 463
Hpy188III TCNNGA 5 cut(s) 43, 170, 218, 320, 376
Hpy8I GTNNAC 4 cut(s) 78, 417, 528, 589
Hpy99I CGWCG 3 cut(s) 148, 311, 314
HpyCH4III ACNGT 2 cut(s) 124, 389
HpyCH4IV ACGT 2 cut(s) 61, 469
HpyCH4V TGCA 6 cut(s) 97, 141, 154, 369, 454, 569
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 251, 407
HpyF3I CTNAG 3 cut(s) 8, 225, 411
HpySE526I ACGT 2 cut(s) 61, 469
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 3 cut(s) 23, 345, 584
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 1 cut(s) 356
LmnI GCTCC 3 cut(s) 172, 271, 582
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 1 cut(s) 232
MaeII ACGT 2 cut(s) 61, 469
MaeIII GTNAC 1 cut(s) 383
MalI GATC 1 cut(s) 358
MboI GATC 1 cut(s) 356
MboII GAAGA 4 cut(s) 218, 275, 299, 311
MflI RGATCY 1 cut(s) 356
MhlI GDGCHC 2 cut(s) 256, 579
MluCI AATT 2 cut(s) 155, 533
MseI TTAA 3 cut(s) 36, 198, 515
MslI CAYNNNNRTG 2 cut(s) 189, 240
MspA1I CMGCKG 1 cut(s) 151
MspCI CTTAAG 1 cut(s) 514
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 2 cut(s) 176, 306
MwoI GCNNNNNNNGC 3 cut(s) 173, 251, 407
NdeII GATC 1 cut(s) 356
NlaIII CATG 3 cut(s) 23, 345, 584
NlaIV GGNNCC 3 cut(s) 133, 222, 333
NmuCI GTSAC 1 cut(s) 383
PfeI GAWTC 4 cut(s) 12, 46, 214, 279
PkrI GCNGC 2 cut(s) 150, 153
Psp124BI GAGCTC 1 cut(s) 579
Psp1406I AACGTT 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 521
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 3 cut(s) 133, 222, 333
PspPI GGNCC 3 cut(s) 220, 232, 544
PstI CTGCAG 1 cut(s) 99
PsuI RGATCY 1 cut(s) 356
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
RseI CAYNNNNRTG 2 cut(s) 189, 240
SacI GAGCTC 1 cut(s) 579
SaqAI TTAA 3 cut(s) 36, 198, 515
SatI GCNGC 2 cut(s) 149, 152
Sau3AI GATC 1 cut(s) 356
Sau96I GGNCC 3 cut(s) 220, 232, 544
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 2 cut(s) 256, 579
SetI ASST 9 cut(s) 64, 83, 87, 169, 319, 453, 472, 549, 579
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 2 cut(s) 95, 558
SinI GGWCC 3 cut(s) 220, 232, 544
SmiMI CAYNNNNRTG 2 cut(s) 189, 240
SmlI CTYRAG 1 cut(s) 514
SmoI CTYRAG 1 cut(s) 514
Sse9I AATT 2 cut(s) 155, 533
SsiI CCGC 3 cut(s) 149, 245, 592
SstI GAGCTC 1 cut(s) 579
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 124, 389
TaiI ACGT 2 cut(s) 64, 472
TaqI TCGA 5 cut(s) 42, 117, 127, 573, 609
TasI AATT 2 cut(s) 155, 533
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 4 cut(s) 12, 46, 214, 279
Tru1I TTAA 3 cut(s) 36, 198, 515
Tru9I TTAA 3 cut(s) 36, 198, 515
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 6 cut(s) 4, 17, 36, 300, 306, 497
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 1 cut(s) 127
Vha464I CTTAAG 1 cut(s) 514
VpaK11BI GGWCC 3 cut(s) 220, 232, 544
XapI RAATTY 1 cut(s) 533
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.