Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000279.1

Orthogroup ID

OG0000124

Physical Location & Seq

Genomic Coordinates Forward (+)

181085 .. 182226

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000279.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggttaaactcaaggacgccgggggcaccggaccaccaccccactcgtccggcgagctgtctcatatggagttcgaattggacttcatccggcttacccattttgggaacctctgtggattctgctacttcaaccagagcaactttaaccacagctcagatgatacggggggtagcaattctaaccctcactctagcgctccacttactcttggtcctaatgatctgcgccatctggaccattgcttttactttgacaagataaggaacaaagggagcaccactgagtttgggttgttcgactatgttgtttcggaaaatgtaccgaagcagatcaatggttatgattgtggcatatatgtcatacagaatatgatacactatcagaccaattgggctaaaggggccagatcggatgatcttcgatcaagtgtgcttctgtattgtctcagatcccctgctagtgagagagccaaattaacccttagagaagcacgggcatttgatgtggatgagggaattttcaaagaggacatcgtcctcgctgttactggatgggaagaagttgaaatgtttgagtttgatgacataggtgatgagttggaagctaatgaggtcgaggggggggagggtggcgactacagtgacaaagggttattcgggcactgtaggagggaacaaggacctgaggggaggctttcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

234

Amino Acids

26.15

Weight (kDa)

4.77

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis	RchiOBHm_Chr2g0155611
rosa_laevigata	RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora	Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii	Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa	Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha	Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana	Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	447
AcsI	RAATTY	1 cut(s)	519
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	1 cut(s)	324
AfeI	AGCGCT	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	133, 526, 569
AluBI	AGCT	3 cut(s)	58, 156, 608
AluI	AGCT	3 cut(s)	58, 156, 608
Alw21I	GWGCWC	1 cut(s)	281
Alw26I	GTCTC	2 cut(s)	66, 452
AlwI	GGATC	1 cut(s)	447
Aor51HI	AGCGCT	1 cut(s)	199
AoxI	GGCC	1 cut(s)	405
ApoI	RAATTY	1 cut(s)	519
AspLEI	GCGC	2 cut(s)	200, 231
AspS9I	GGNCC	5 cut(s)	32, 215, 238, 405, 683
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	605
AsuII	TTCGAA	1 cut(s)	75
AvaII	GGWCC	4 cut(s)	32, 215, 238, 683
AxyI	CCTNAGG	1 cut(s)	687
BaeGI	GKGCMC	2 cut(s)	29, 666
BanI	GGYRCC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	281
BccI	CCATC	2 cut(s)	240, 549
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	66, 452
BfaI	CTAG	2 cut(s)	195, 462
BfmI	CTRYAG	2 cut(s)	640, 667
BfoI	RGCGCY	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	4 cut(s)	32, 215, 238, 683
BmgT120I	GGNCC	5 cut(s)	32, 215, 238, 405, 683
BmiI	GGNNCC	3 cut(s)	28, 110, 406
BmrFI	CCNGG	1 cut(s)	22
Bpu14I	TTCGAA	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	556
Bse21I	CCTNAGG	1 cut(s)	687
Bse3DI	GCAATG	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	4 cut(s)	87, 421, 517, 560
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	4 cut(s)	171, 276, 463, 678
BseNI	ACTGG	1 cut(s)	556
BseSI	GKGCMC	2 cut(s)	29, 666
BshFI	GGCC	1 cut(s)	407
BshNI	GGYRCC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	281
BsiSI	CCGG	4 cut(s)	21, 30, 51, 91
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	2 cut(s)	66, 452
BsnI	GGCC	1 cut(s)	407
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	29, 281, 666
Bsp143I	GATC	6 cut(s)	223, 333, 410, 418, 425, 452
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	4 cut(s)	170, 277, 462, 679
BspLI	GGNNCC	3 cut(s)	28, 110, 406
BspPI	GGATC	1 cut(s)	447
BspT104I	TTCGAA	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	6 cut(s)	223, 333, 410, 418, 425, 452
BssNI	GRCGYC	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	644, 668
BstACI	GRCGYC	1 cut(s)	18
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	5 cut(s)	157, 285, 449, 485, 687
BstF5I	GGATG	4 cut(s)	87, 421, 517, 560
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	2 cut(s)	200, 231
BstKTI	GATC	6 cut(s)	226, 336, 413, 421, 428, 455
BstMAI	GTCTC	2 cut(s)	66, 452
BstMBI	GATC	6 cut(s)	223, 333, 410, 418, 425, 452
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	2 cut(s)	640, 667
BstSLI	GKGCMC	2 cut(s)	29, 666
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
Bsu36I	CCTNAGG	1 cut(s)	687
BsuRI	GGCC	1 cut(s)	407
BtsCI	GGATG	4 cut(s)	87, 421, 517, 560
BtsIMutI	CAGTG	3 cut(s)	282, 649, 664
Cac8I	GCNNGC	1 cut(s)	56
CfoI	GCGC	2 cut(s)	200, 231
Cfr13I	GGNCC	5 cut(s)	32, 215, 238, 405, 683
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	323
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviJI	RGCY	8 cut(s)	58, 94, 156, 398, 407, 473, 608, 697
CviKI_1	RGCY	8 cut(s)	58, 94, 156, 398, 407, 473, 608, 697
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	5 cut(s)	157, 285, 449, 485, 687
DpnI	GATC	6 cut(s)	225, 335, 412, 420, 427, 454
DpnII	GATC	6 cut(s)	223, 333, 410, 418, 425, 452
Eco47I	GGWCC	4 cut(s)	32, 215, 238, 683
Eco47III	AGCGCT	1 cut(s)	199
Eco81I	CCTNAGG	1 cut(s)	687
EcoO109I	RGGNCCY	1 cut(s)	683
FauNDI	CATATG	1 cut(s)	66
FokI	GGATG	4 cut(s)	74, 428, 524, 567
FspBI	CTAG	2 cut(s)	195, 462
GlaI	GCGC	2 cut(s)	199, 230
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	4 cut(s)	21, 30, 51, 91
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	2 cut(s)	200, 231
Hin1I	GRCGYC	1 cut(s)	18
Hin6I	GCGC	2 cut(s)	198, 229
HinP1I	GCGC	2 cut(s)	198, 229
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	4 cut(s)	21, 30, 51, 91
HphI	GGTGA	1 cut(s)	605
Hpy188I	TCNGA	5 cut(s)	160, 316, 387, 415, 452
Hpy188III	TCNNGA	1 cut(s)	236
HpyCH4III	ACNGT	2 cut(s)	644, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	5 cut(s)	157, 285, 449, 485, 687
Hsp92I	GRCGYC	1 cut(s)	18
HspAI	GCGC	2 cut(s)	198, 229
Kzo9I	GATC	6 cut(s)	223, 333, 410, 418, 425, 452
LmnI	GCTCC	2 cut(s)	205, 276
MaeI	CTAG	2 cut(s)	195, 462
MaeIII	GTNAC	2 cut(s)	547, 644
MalI	GATC	6 cut(s)	225, 335, 412, 420, 427, 454
MboI	GATC	6 cut(s)	223, 333, 410, 418, 425, 452
MboII	GAAGA	2 cut(s)	413, 572
MfeI	CAATTG	1 cut(s)	391
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	3 cut(s)	29, 281, 666
MluCI	AATT	5 cut(s)	77, 178, 391, 476, 519
MmeI	TCCRAC	1 cut(s)	582
MseI	TTAA	3 cut(s)	6, 147, 479
MspI	CCGG	4 cut(s)	21, 30, 51, 91
MspR9I	CCNGG	1 cut(s)	22
MunI	CAATTG	1 cut(s)	391
MwoI	GCNNNNNNNGC	1 cut(s)	404
NciI	CCSGG	1 cut(s)	22
NdeI	CATATG	1 cut(s)	66
NdeII	GATC	6 cut(s)	223, 333, 410, 418, 425, 452
NlaIV	GGNNCC	3 cut(s)	28, 110, 406
NmuCI	GTSAC	1 cut(s)	644
NspV	TTCGAA	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	120
PflFI	GACNNNGTC	1 cut(s)	536
PpuMI	RGGWCCY	1 cut(s)	683
Psp5II	RGGWCCY	1 cut(s)	683
PspN4I	GGNNCC	3 cut(s)	28, 110, 406
PspPI	GGNCC	5 cut(s)	32, 215, 238, 405, 683
PspPPI	RGGWCCY	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	452
PsyI	GACNNNGTC	1 cut(s)	536
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SaqAI	TTAA	3 cut(s)	6, 147, 479
Sau3AI	GATC	6 cut(s)	223, 333, 410, 418, 425, 452
Sau96I	GGNCC	5 cut(s)	32, 215, 238, 405, 683
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	3 cut(s)	29, 281, 666
SetI	ASST	7 cut(s)	60, 114, 158, 595, 610, 618, 688
SfcI	CTRYAG	2 cut(s)	640, 667
SfuI	TTCGAA	1 cut(s)	75
SinI	GGWCC	4 cut(s)	32, 215, 238, 683
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	5 cut(s)	77, 178, 391, 476, 519
SspMI	CTAG	2 cut(s)	195, 462
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	2 cut(s)	644, 668
TaqI	TCGA	4 cut(s)	75, 300, 424, 618
TasI	AATT	5 cut(s)	77, 178, 391, 476, 519
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	3 cut(s)	6, 147, 479
Tru9I	TTAA	3 cut(s)	6, 147, 479
TscAI	CASTG	3 cut(s)	289, 649, 671
TseFI	GTSAC	1 cut(s)	644
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	1 cut(s)	76
TspRI	CASTG	3 cut(s)	289, 649, 671
Tth111I	GACNNNGTC	1 cut(s)	536
VpaK11BI	GGWCC	4 cut(s)	32, 215, 238, 683
XapI	RAATTY	1 cut(s)	519
XspI	CTAG	2 cut(s)	195, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.